ENSG00000134313

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000473731 ENSG00000134313 HEK293_OSMI2_2hA HEK293_TMG_2hB KIDINS220 protein_coding protein_coding 14.34463 4.932396 19.48682 0.4814808 0.2174426 1.979957 0.1457635 0.4295276 0.3114315 0.4295276 0.3114315 -0.4514423 0.01572917 0.0888000 0.01620000 -0.07260000 8.754489e-01 4.593971e-25 FALSE TRUE
ENST00000685097 ENSG00000134313 HEK293_OSMI2_2hA HEK293_TMG_2hB KIDINS220 protein_coding protein_coding 14.34463 4.932396 19.48682 0.4814808 0.2174426 1.979957 0.2637415 0.5215410 0.3920306 0.4507173 0.2746151 -0.4028754 0.02218333 0.1094667 0.02013333 -0.08933333 8.042373e-01 4.593971e-25 FALSE TRUE
ENST00000687912 ENSG00000134313 HEK293_OSMI2_2hA HEK293_TMG_2hB KIDINS220 protein_coding protein_coding 14.34463 4.932396 19.48682 0.4814808 0.2174426 1.979957 0.3900464 0.9206287 0.0000000 0.4889270 0.0000000 -6.5401338 0.06682083 0.1967333 0.00000000 -0.19673333 5.918941e-02 4.593971e-25 FALSE TRUE
MSTRG.17915.12 ENSG00000134313 HEK293_OSMI2_2hA HEK293_TMG_2hB KIDINS220 protein_coding   14.34463 4.932396 19.48682 0.4814808 0.2174426 1.979957 9.5775297 2.7361016 13.0853472 0.7425873 0.4413619 2.2535974 0.69200833 0.5397667 0.67120000 0.13143333 5.030056e-01 4.593971e-25 FALSE TRUE
MSTRG.17915.18 ENSG00000134313 HEK293_OSMI2_2hA HEK293_TMG_2hB KIDINS220 protein_coding   14.34463 4.932396 19.48682 0.4814808 0.2174426 1.979957 3.2399048 0.0000000 4.8442946 0.0000000 0.2013164 8.9231179 0.13864167 0.0000000 0.24876667 0.24876667 4.593971e-25 4.593971e-25 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000134313 E001 0.0000000       2 8721081 8721145 65 -      
ENSG00000134313 E002 0.0000000       2 8721146 8721154 9 -      
ENSG00000134313 E003 0.2924217 0.0290785164 1.000000e+00   2 8721155 8721217 63 - 0.121 0.000 -10.029
ENSG00000134313 E004 11.0758978 0.0015528700 2.059277e-02 5.273369e-02 2 8721218 8723412 2195 - 0.925 1.208 1.031
ENSG00000134313 E005 3.0476425 0.0195119618 9.095672e-01 9.465474e-01 2 8723413 8724060 648 - 0.553 0.560 0.031
ENSG00000134313 E006 4.3931835 0.0036327620 6.010592e-01 7.222157e-01 2 8724061 8725559 1499 - 0.687 0.632 -0.233
ENSG00000134313 E007 0.5964967 0.0231293312 8.512345e-01 9.077579e-01 2 8725560 8725599 40 - 0.171 0.219 0.443
ENSG00000134313 E008 0.8909948 0.0136139114 7.926049e-01 8.673958e-01 2 8725600 8725667 68 - 0.256 0.219 -0.292
ENSG00000134313 E009 0.8952612 0.0160950686 7.927302e-01 8.674828e-01 2 8726887 8726943 57 - 0.257 0.219 -0.293
ENSG00000134313 E010 0.5954526 0.0172671820 3.758061e-01 5.202056e-01 2 8727189 8727267 79 - 0.216 0.000 -13.302
ENSG00000134313 E011 0.0000000       2 8728858 8728877 20 -      
ENSG00000134313 E012 0.4407149 0.0215217849 6.068754e-01 7.269404e-01 2 8728878 8728928 51 - 0.121 0.219 1.029
ENSG00000134313 E013 2.3844462 0.0081151047 1.892968e-02 4.917764e-02 2 8728929 8728930 2 - 0.328 0.749 2.033
ENSG00000134313 E014 11.4929576 0.0438966401 2.362559e-06 1.808768e-05 2 8728931 8728981 51 - 0.765 1.441 2.463
ENSG00000134313 E015 137.1366383 0.0107218915 1.594279e-20 1.084883e-18 2 8728982 8729309 328 - 1.853 2.429 1.926
ENSG00000134313 E016 139.2732329 0.0178429949 3.834781e-12 8.544904e-11 2 8729310 8729504 195 - 1.882 2.413 1.776
ENSG00000134313 E017 125.4696388 0.0012169474 1.500474e-41 5.754256e-39 2 8729505 8729783 279 - 1.842 2.362 1.743
ENSG00000134313 E018 231.2450801 0.0014916308 9.772967e-24 9.407821e-22 2 8729784 8730200 417 - 2.187 2.525 1.129
ENSG00000134313 E019 558.4096605 0.0001685998 1.427673e-08 1.710202e-07 2 8730201 8731439 1239 - 2.636 2.770 0.446
ENSG00000134313 E020 246.3909458 0.0002109260 6.694058e-01 7.762228e-01 2 8731440 8731952 513 - 2.310 2.339 0.095
ENSG00000134313 E021 54.3826348 0.0004517745 4.423058e-01 5.839473e-01 2 8731953 8731982 30 - 1.648 1.729 0.276
ENSG00000134313 E022 0.2987644 0.0271490788 1.000000e+00   2 8733344 8733443 100 - 0.121 0.000 -12.190
ENSG00000134313 E023 51.4486902 0.0026675056 4.509720e-01 5.919811e-01 2 8733444 8733475 32 - 1.624 1.708 0.285
ENSG00000134313 E024 97.5627169 0.0003350955 1.624831e-01 2.783781e-01 2 8733476 8733680 205 - 1.924 1.903 -0.071
ENSG00000134313 E025 62.4334537 0.0008450719 1.497241e-04 7.458136e-04 2 8734655 8734753 99 - 1.762 1.578 -0.625
ENSG00000134313 E026 71.2668684 0.0003404982 7.146326e-05 3.872751e-04 2 8736868 8736999 132 - 1.817 1.641 -0.594
ENSG00000134313 E027 9.0970926 0.0018177763 5.110249e-05 2.873105e-04 2 8737000 8740050 3051 - 1.021 0.365 -2.852
ENSG00000134313 E028 0.7512344 0.3085216601 3.933832e-01 5.372740e-01 2 8740051 8740112 62 - 0.257 0.000 -12.579
ENSG00000134313 E029 0.7512344 0.3085216601 3.933832e-01 5.372740e-01 2 8740113 8740151 39 - 0.257 0.000 -12.579
ENSG00000134313 E030 0.7533107 0.3084905341 3.933545e-01 5.372502e-01 2 8740152 8740184 33 - 0.258 0.000 -12.581
ENSG00000134313 E031 1.0478088 0.1668464505 1.904137e-01 3.142767e-01 2 8740185 8740544 360 - 0.329 0.000 -13.273
ENSG00000134313 E032 0.0000000       2 8746505 8746506 2 -      
ENSG00000134313 E033 0.0000000       2 8746507 8746509 3 -      
ENSG00000134313 E034 0.0000000       2 8746510 8746516 7 -      
ENSG00000134313 E035 1.3318114 0.0096036716 7.726479e-02 1.551021e-01 2 8746517 8747144 628 - 0.389 0.000 -14.536
ENSG00000134313 E036 0.4439371 0.0215552255 5.575886e-01 6.859718e-01 2 8747145 8747201 57 - 0.171 0.000 -12.836
ENSG00000134313 E037 1.3338878 0.0101433682 7.740352e-02 1.552964e-01 2 8747202 8747886 685 - 0.389 0.000 -14.526
ENSG00000134313 E038 67.5399892 0.0004256134 9.043742e-03 2.638698e-02 2 8747887 8748000 114 - 1.780 1.679 -0.342
ENSG00000134313 E039 0.2987644 0.0271490788 1.000000e+00   2 8748001 8748441 441 - 0.121 0.000 -12.190
ENSG00000134313 E040 0.8793415 0.1569052448 2.451027e-01 3.801483e-01 2 8748442 8749370 929 - 0.293 0.000 -13.072
ENSG00000134313 E041 0.2987644 0.0271490788 1.000000e+00   2 8749371 8749421 51 - 0.121 0.000 -12.190
ENSG00000134313 E042 0.4439371 0.0215552255 5.575886e-01 6.859718e-01 2 8749422 8750111 690 - 0.171 0.000 -12.836
ENSG00000134313 E043 88.9017594 0.0003185387 1.573701e-02 4.214194e-02 2 8750112 8750335 224 - 1.893 1.820 -0.243
ENSG00000134313 E044 0.0000000       2 8751292 8751296 5 -      
ENSG00000134313 E045 0.0000000       2 8751297 8751302 6 -      
ENSG00000134313 E046 0.0000000       2 8751303 8751465 163 -      
ENSG00000134313 E047 79.8732621 0.0003285545 2.551973e-03 8.917925e-03 2 8751466 8751644 179 - 1.855 1.745 -0.372
ENSG00000134313 E048 0.0000000       2 8751645 8751952 308 -      
ENSG00000134313 E049 0.0000000       2 8757194 8757787 594 -      
ENSG00000134313 E050 0.2998086 0.0296183600 3.379960e-01   2 8769462 8770669 1208 - 0.065 0.219 2.028
ENSG00000134313 E051 88.8014607 0.0027703227 1.650790e-03 6.123698e-03 2 8770670 8770832 163 - 1.904 1.775 -0.435
ENSG00000134313 E052 78.3065255 0.0003445020 1.132726e-02 3.194706e-02 2 8776748 8776878 131 - 1.841 1.755 -0.291
ENSG00000134313 E053 44.6510983 0.0005029940 1.941670e-01 3.189985e-01 2 8776879 8776892 14 - 1.591 1.547 -0.151
ENSG00000134313 E054 2.0909843 0.0333330719 5.332636e-01 6.654844e-01 2 8776893 8778638 1746 - 0.467 0.364 -0.555
ENSG00000134313 E055 75.9662860 0.0004143163 1.030614e-01 1.951414e-01 2 8778639 8778719 81 - 1.817 1.775 -0.140
ENSG00000134313 E056 44.5357594 0.0005734855 5.159292e-01 6.505414e-01 2 8778720 8778727 8 - 1.580 1.578 -0.007
ENSG00000134313 E057 0.1515154 0.0428953846 1.000000e+00   2 8778728 8778895 168 - 0.065 0.000 -11.037
ENSG00000134313 E058 132.7910423 0.0004315727 5.747340e-03 1.794742e-02 2 8778896 8779139 244 - 2.062 1.996 -0.223
ENSG00000134313 E059 85.3887740 0.0003426431 1.600457e-03 5.962669e-03 2 8779674 8779814 141 - 1.883 1.770 -0.380
ENSG00000134313 E060 115.2386150 0.0070701555 1.364631e-03 5.191583e-03 2 8785741 8786030 290 - 2.017 1.873 -0.482
ENSG00000134313 E061 66.8429473 0.0004935588 7.696325e-04 3.148651e-03 2 8786206 8786357 152 - 1.782 1.635 -0.500
ENSG00000134313 E062 0.3666179 0.0301529500 3.366481e-01 4.805233e-01 2 8788007 8788646 640 - 0.065 0.220 2.034
ENSG00000134313 E063 60.9423898 0.0004231407 1.657968e-03 6.147677e-03 2 8788647 8788812 166 - 1.742 1.600 -0.483
ENSG00000134313 E064 0.0000000       2 8789405 8789879 475 -      
ENSG00000134313 E065 47.6193074 0.0013974681 7.098510e-04 2.934176e-03 2 8789880 8789983 104 - 1.648 1.457 -0.653
ENSG00000134313 E066 41.4539018 0.0544509148 8.683196e-03 2.549329e-02 2 8789984 8790059 76 - 1.604 1.311 -1.011
ENSG00000134313 E067 0.0000000       2 8790966 8791019 54 -      
ENSG00000134313 E068 0.0000000       2 8791020 8791059 40 -      
ENSG00000134313 E069 55.0671195 0.0035379650 3.207688e-05 1.894433e-04 2 8791060 8791224 165 - 1.719 1.467 -0.857
ENSG00000134313 E070 63.0336124 0.0004199269 2.021542e-05 1.252166e-04 2 8793810 8793987 178 - 1.772 1.563 -0.710
ENSG00000134313 E071 0.1515154 0.0428953846 1.000000e+00   2 8793988 8794316 329 - 0.065 0.000 -11.037
ENSG00000134313 E072 63.2389155 0.0004401232 2.749773e-06 2.076271e-05 2 8796771 8796869 99 - 1.776 1.538 -0.808
ENSG00000134313 E073 0.7447899 0.1322906091 3.883535e-01 5.324350e-01 2 8797752 8798201 450 - 0.171 0.361 1.423
ENSG00000134313 E074 66.1543698 0.0004226578 2.023155e-05 1.253124e-04 2 8798202 8798300 99 - 1.789 1.586 -0.691
ENSG00000134313 E075 0.1472490 0.0431025159 1.000000e+00   2 8800207 8800399 193 - 0.065 0.000 -11.035
ENSG00000134313 E076 79.9019689 0.0003491142 2.939826e-09 3.996420e-08 2 8800400 8800498 99 - 1.881 1.600 -0.950
ENSG00000134313 E077 90.0565891 0.0003392571 7.434301e-14 2.152868e-12 2 8802930 8803127 198 - 1.942 1.586 -1.205
ENSG00000134313 E078 59.3880903 0.0023750266 2.166549e-05 1.332229e-04 2 8806271 8806369 99 - 1.749 1.513 -0.801
ENSG00000134313 E079 0.1451727 0.0430674009 1.000000e+00   2 8806370 8806378 9 - 0.065 0.000 -11.035
ENSG00000134313 E080 0.0000000       2 8806581 8806643 63 -      
ENSG00000134313 E081 49.4435607 0.0005762957 3.531308e-05 2.062637e-04 2 8812395 8812493 99 - 1.673 1.436 -0.807
ENSG00000134313 E082 6.5784270 0.0024327889 3.284911e-02 7.750772e-02 2 8812494 8812496 3 - 0.872 0.560 -1.292
ENSG00000134313 E083 0.0000000       2 8812497 8813236 740 -      
ENSG00000134313 E084 61.3469675 0.0003711262 9.202659e-09 1.142400e-07 2 8813237 8813335 99 - 1.775 1.457 -1.085
ENSG00000134313 E085 67.5565835 0.0003982793 5.311138e-08 5.693634e-07 2 8817618 8817716 99 - 1.809 1.530 -0.947
ENSG00000134313 E086 62.9283920 0.0004288505 9.797892e-12 2.044478e-10 2 8818695 8818793 99 - 1.792 1.393 -1.365
ENSG00000134313 E087 0.9932149 0.0194388767 1.401597e-03 5.312283e-03 2 8824059 8825742 1684 - 0.065 0.632 4.350
ENSG00000134313 E088 0.1451727 0.0430674009 1.000000e+00   2 8825743 8825913 171 - 0.065 0.000 -11.035
ENSG00000134313 E089 0.1472490 0.0431025159 1.000000e+00   2 8826702 8826985 284 - 0.065 0.000 -11.035
ENSG00000134313 E090 49.6990970 0.0004248659 9.806712e-14 2.790825e-12 2 8826986 8827129 144 - 1.707 1.171 -1.853
ENSG00000134313 E091 0.3729606 0.0309573414 3.370919e-01 4.809502e-01 2 8837469 8837479 11 - 0.065 0.220 2.034
ENSG00000134313 E092 24.9827963 0.0044762830 4.956652e-03 1.581060e-02 2 8837480 8837630 151 - 1.384 1.151 -0.816