ENSG00000133612

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000397238 ENSG00000133612 HEK293_OSMI2_2hA HEK293_TMG_2hB AGAP3 protein_coding protein_coding 100.6015 162.8409 59.59553 9.933311 2.453755 -1.450034 8.844760 7.187233 11.306344 3.030769 0.4485598 0.6528937 0.09310833 0.04363333 0.18986667 0.14623333 2.266736e-03 8.031996e-56 FALSE TRUE
ENST00000461065 ENSG00000133612 HEK293_OSMI2_2hA HEK293_TMG_2hB AGAP3 protein_coding protein_coding 100.6015 162.8409 59.59553 9.933311 2.453755 -1.450034 5.306616 14.896079 0.000000 5.063019 0.0000000 -10.5416851 0.03751667 0.09400000 0.00000000 -0.09400000 1.121997e-10 8.031996e-56 FALSE TRUE
ENST00000473312 ENSG00000133612 HEK293_OSMI2_2hA HEK293_TMG_2hB AGAP3 protein_coding protein_coding 100.6015 162.8409 59.59553 9.933311 2.453755 -1.450034 13.771999 25.132544 8.648500 4.997709 0.5669209 -1.5379416 0.13405833 0.15260000 0.14640000 -0.00620000 9.718359e-01 8.031996e-56 FALSE TRUE
ENST00000492234 ENSG00000133612 HEK293_OSMI2_2hA HEK293_TMG_2hB AGAP3 protein_coding processed_transcript 100.6015 162.8409 59.59553 9.933311 2.453755 -1.450034 3.942897 5.792386 3.516352 4.798333 2.2181582 -0.7184699 0.05268333 0.03523333 0.05646667 0.02123333 8.967838e-01 8.031996e-56   FALSE
ENST00000622464 ENSG00000133612 HEK293_OSMI2_2hA HEK293_TMG_2hB AGAP3 protein_coding protein_coding 100.6015 162.8409 59.59553 9.933311 2.453755 -1.450034 10.590282 22.030049 0.000000 2.430384 0.0000000 -11.1059117 0.09710417 0.13500000 0.00000000 -0.13500000 8.031996e-56 8.031996e-56 FALSE TRUE
MSTRG.30937.9 ENSG00000133612 HEK293_OSMI2_2hA HEK293_TMG_2hB AGAP3 protein_coding   100.6015 162.8409 59.59553 9.933311 2.453755 -1.450034 21.177752 34.353386 13.562740 1.106211 0.1410287 -1.3401602 0.20715000 0.21300000 0.22816667 0.01516667 8.110829e-01 8.031996e-56 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000133612 E001 0.6643356 0.6936187143 7.261575e-01 8.192543e-01 7 151085831 151085866 36 + 0.000 0.215 9.847
ENSG00000133612 E002 0.8126288 0.1699440109 3.108822e-01 4.533228e-01 7 151085867 151085878 12 + 0.000 0.254 12.553
ENSG00000133612 E003 9.6132371 0.0322125857 3.528502e-01 4.970992e-01 7 151085879 151085958 80 + 1.035 0.918 -0.434
ENSG00000133612 E004 10.5793861 0.0459939466 1.529320e-01 2.656493e-01 7 151085959 151086009 51 + 1.133 0.937 -0.718
ENSG00000133612 E005 12.3563388 0.1477554591 2.450136e-01 3.800402e-01 7 151086010 151086060 51 + 1.227 0.989 -0.858
ENSG00000133612 E006 22.0381674 0.0337976241 6.271518e-09 8.039145e-08 7 151086475 151086490 16 + 1.680 1.036 -2.248
ENSG00000133612 E007 47.3847248 0.0694522248 1.129335e-06 9.272704e-06 7 151086491 151086539 49 + 1.999 1.365 -2.156
ENSG00000133612 E008 69.0624317 0.0664347013 7.489628e-06 5.119377e-05 7 151086540 151086692 153 + 2.124 1.567 -1.880
ENSG00000133612 E009 21.5946832 0.0504691607 2.821759e-02 6.844734e-02 7 151086693 151086704 12 + 1.468 1.207 -0.910
ENSG00000133612 E010 29.9117526 0.0272983738 3.818222e-03 1.263186e-02 7 151086705 151086716 12 + 1.611 1.334 -0.955
ENSG00000133612 E011 32.4080897 0.0383599158 2.025968e-03 7.307392e-03 7 151086717 151086741 25 + 1.676 1.350 -1.118
ENSG00000133612 E012 31.6372755 0.0362167098 2.880918e-03 9.913924e-03 7 151086742 151086753 12 + 1.655 1.346 -1.062
ENSG00000133612 E013 31.1996811 0.0366159697 4.835253e-03 1.547312e-02 7 151086754 151086786 33 + 1.639 1.346 -1.008
ENSG00000133612 E014 80.9127340 0.0018828651 5.527828e-18 2.791870e-16 7 151086787 151086894 108 + 2.091 1.711 -1.277
ENSG00000133612 E015 105.0066510 0.0008892801 1.846669e-11 3.680263e-10 7 151086895 151086918 24 + 2.122 1.870 -0.847
ENSG00000133612 E016 96.8673268 0.0035987973 1.162544e-03 4.514051e-03 7 151086919 151086921 3 + 2.016 1.870 -0.490
ENSG00000133612 E017 489.2897432 0.0039052249 6.696650e-03 2.043721e-02 7 151086922 151087066 145 + 2.672 2.592 -0.266
ENSG00000133612 E018 334.8077865 0.0030467416 2.918575e-02 7.035932e-02 7 151087067 151087072 6 + 2.494 2.432 -0.207
ENSG00000133612 E019 1.4715798 0.0096765512 3.594585e-01 5.037865e-01 7 151087073 151087204 132 + 0.189 0.373 1.317
ENSG00000133612 E020 2.8680355 0.0052229552 6.323797e-02 1.321054e-01 7 151089712 151090165 454 + 0.730 0.439 -1.321
ENSG00000133612 E021 1.5573326 0.0544860262 1.282577e-01 2.317145e-01 7 151090493 151090547 55 + 0.572 0.293 -1.505
ENSG00000133612 E022 0.4481018 0.1508453699 7.502352e-01 8.369784e-01 7 151112184 151112244 61 + 0.189 0.140 -0.517
ENSG00000133612 E023 6.5332501 0.0439575815 5.281244e-04 2.264738e-03 7 151114678 151115437 760 + 1.132 0.619 -1.992
ENSG00000133612 E024 2.3595558 0.0069114282 2.925890e-03 1.004678e-02 7 151115438 151115532 95 + 0.772 0.295 -2.338
ENSG00000133612 E025 10.4129769 0.0017715944 7.168647e-01 8.124035e-01 7 151115533 151115641 109 + 0.937 0.989 0.194
ENSG00000133612 E026 2.1819143 0.0068051054 3.222656e-01 4.655787e-01 7 151116307 151116650 344 + 0.572 0.407 -0.814
ENSG00000133612 E027 576.0823183 0.0051601291 2.195743e-01 3.498751e-01 7 151116793 151116851 59 + 2.707 2.676 -0.105
ENSG00000133612 E028 766.3250250 0.0028525842 3.389415e-01 4.828546e-01 7 151117095 151117182 88 + 2.817 2.804 -0.044
ENSG00000133612 E029 476.8995423 0.0014472052 8.509690e-01 9.075805e-01 7 151117371 151117391 21 + 2.587 2.604 0.058
ENSG00000133612 E030 617.3829400 0.0017617781 4.928140e-01 6.299400e-01 7 151117392 151117456 65 + 2.688 2.719 0.103
ENSG00000133612 E031 741.0325685 0.0008577110 5.985785e-01 7.201394e-01 7 151117636 151117753 118 + 2.774 2.797 0.076
ENSG00000133612 E032 442.3420536 0.0008030939 3.257455e-01 4.691833e-01 7 151117754 151117777 24 + 2.540 2.575 0.116
ENSG00000133612 E033 13.4469924 0.0013630777 4.972183e-02 1.086666e-01 7 151117778 151118162 385 + 1.226 1.045 -0.650
ENSG00000133612 E034 4.8411890 0.0053727698 1.591158e-01 2.739293e-01 7 151118209 151118209 1 + 0.845 0.652 -0.782
ENSG00000133612 E035 593.6591175 0.0002868430 6.483169e-01 7.598471e-01 7 151118210 151118267 58 + 2.680 2.699 0.064
ENSG00000133612 E036 463.8345535 0.0011755929 6.001713e-01 7.214508e-01 7 151118268 151118293 26 + 2.569 2.595 0.084
ENSG00000133612 E037 500.4270109 0.0012180793 7.684091e-01 8.503481e-01 7 151118294 151118344 51 + 2.606 2.626 0.065
ENSG00000133612 E038 6.3976664 0.0031311007 1.739999e-03 6.408321e-03 7 151118345 151118473 129 + 1.056 0.671 -1.491
ENSG00000133612 E039 13.5139855 0.0013127382 4.680478e-01 6.074844e-01 7 151118474 151118504 31 + 1.132 1.067 -0.234
ENSG00000133612 E040 651.1823655 0.0001788907 9.053179e-02 1.759670e-01 7 151118505 151118632 128 + 2.701 2.741 0.133
ENSG00000133612 E041 3.1354771 0.0049888996 1.274452e-01 2.305940e-01 7 151119160 151119196 37 + 0.730 0.496 -1.033
ENSG00000133612 E042 3.8257378 0.0043139396 2.556206e-02 6.304310e-02 7 151119197 151119254 58 + 0.845 0.522 -1.366
ENSG00000133612 E043 381.1862452 0.0014583516 4.584149e-01 5.987310e-01 7 151119987 151120015 29 + 2.508 2.500 -0.027
ENSG00000133612 E044 526.8543713 0.0002592486 9.495781e-01 9.724249e-01 7 151120016 151120070 55 + 2.631 2.643 0.040
ENSG00000133612 E045 574.9437826 0.0002659606 4.091411e-01 5.527585e-01 7 151120071 151120145 75 + 2.658 2.685 0.088
ENSG00000133612 E046 36.6110908 0.0006311567 6.107563e-01 7.300428e-01 7 151120520 151120567 48 + 1.514 1.490 -0.083
ENSG00000133612 E047 69.9687941 0.0004049498 2.796846e-01 4.194472e-01 7 151120568 151120745 178 + 1.801 1.758 -0.144
ENSG00000133612 E048 4.3858177 0.0036253326 6.445778e-05 3.532043e-04 7 151120746 151121033 288 + 1.012 0.469 -2.257
ENSG00000133612 E049 845.1286194 0.0015872199 4.154376e-10 6.603743e-09 7 151122725 151123621 897 + 2.714 2.881 0.556
ENSG00000133612 E050 38.6246197 0.0007401035 6.325470e-02 1.321287e-01 7 151123622 151123793 172 + 1.599 1.493 -0.365
ENSG00000133612 E051 333.8026441 0.0003362136 1.225586e-01 2.235996e-01 7 151123794 151123886 93 + 2.463 2.437 -0.086
ENSG00000133612 E052 1.7755425 0.0656526582 4.564444e-01 5.968587e-01 7 151128333 151128576 244 + 0.503 0.370 -0.697
ENSG00000133612 E053 0.9963223 0.0249727499 1.228601e-01 2.240375e-01 7 151128577 151128579 3 + 0.000 0.334 13.143
ENSG00000133612 E054 210.0565208 0.0001993935 1.593490e-01 2.742461e-01 7 151128580 151128595 16 + 2.266 2.236 -0.100
ENSG00000133612 E055 393.6048263 0.0001249108 4.999094e-02 1.091640e-01 7 151128596 151128684 89 + 2.539 2.508 -0.102
ENSG00000133612 E056 17.7939817 0.0010094776 3.333168e-02 7.844792e-02 7 151131072 151131286 215 + 1.012 1.238 0.813
ENSG00000133612 E057 226.5270254 0.0004253788 1.610544e-01 2.764905e-01 7 151134400 151134424 25 + 2.298 2.268 -0.099
ENSG00000133612 E058 315.7758513 0.0001710718 3.300789e-01 4.736770e-01 7 151134425 151134481 57 + 2.430 2.417 -0.042
ENSG00000133612 E059 398.2603050 0.0002250266 6.907740e-01 7.923724e-01 7 151134482 151134568 87 + 2.506 2.525 0.064
ENSG00000133612 E060 42.3993962 0.0005336266 2.041848e-04 9.818814e-04 7 151136226 151136560 335 + 1.705 1.498 -0.704
ENSG00000133612 E061 40.7462506 0.0005439427 8.927608e-05 4.715895e-04 7 151137730 151138142 413 + 1.700 1.479 -0.755
ENSG00000133612 E062 214.3246999 0.0003468826 1.379542e-01 2.452288e-01 7 151138143 151138313 171 + 2.207 2.261 0.183
ENSG00000133612 E063 28.3198513 0.0006799529 1.461272e-01 2.564214e-01 7 151139568 151139978 411 + 1.460 1.364 -0.331
ENSG00000133612 E064 278.5684741 0.0001783722 2.005145e-01 3.268474e-01 7 151139979 151140116 138 + 2.331 2.374 0.144
ENSG00000133612 E065 36.5081061 0.0005855570 2.533891e-06 1.927941e-05 7 151140117 151140718 602 + 1.691 1.412 -0.951
ENSG00000133612 E066 41.1754799 0.0061374177 3.898003e-01 5.338468e-01 7 151140719 151140876 158 + 1.588 1.536 -0.175
ENSG00000133612 E067 64.5425752 0.0042130700 3.137719e-02 7.463699e-02 7 151140877 151141897 1021 + 1.823 1.712 -0.376
ENSG00000133612 E068 649.4672526 0.0015110559 9.933886e-01 1.000000e+00 7 151141898 151142052 155 + 2.724 2.738 0.046
ENSG00000133612 E069 531.7396108 0.0044267409 7.980984e-01 8.711532e-01 7 151142163 151142253 91 + 2.629 2.654 0.085
ENSG00000133612 E070 854.7310818 0.0042604070 9.722815e-02 1.862445e-01 7 151142412 151142634 223 + 2.798 2.871 0.243
ENSG00000133612 E071 944.3531576 0.0032454222 2.719027e-04 1.265413e-03 7 151143341 151143596 256 + 2.797 2.924 0.422
ENSG00000133612 E072 1508.8208391 0.0084015437 9.283419e-03 2.699280e-02 7 151143737 151144496 760 + 2.998 3.129 0.434