ENSG00000132600

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000563608 ENSG00000132600 HEK293_OSMI2_2hA HEK293_TMG_2hB PRMT7 protein_coding retained_intron 54.17378 84.21336 34.49949 2.760923 0.4496835 -1.287227 2.842746 3.677896 0.7189084 0.6508145 0.2494814 -2.33898865 0.05526667 0.04430000 0.02103333 -0.02326667 3.045210e-01 3.202228e-10 FALSE FALSE
ENST00000565356 ENSG00000132600 HEK293_OSMI2_2hA HEK293_TMG_2hB PRMT7 protein_coding retained_intron 54.17378 84.21336 34.49949 2.760923 0.4496835 -1.287227 3.897013 2.656683 3.7297675 0.1902186 0.3529918 0.48790208 0.08227917 0.03170000 0.10826667 0.07656667 1.781145e-08 3.202228e-10 FALSE TRUE
ENST00000569047 ENSG00000132600 HEK293_OSMI2_2hA HEK293_TMG_2hB PRMT7 protein_coding protein_coding 54.17378 84.21336 34.49949 2.760923 0.4496835 -1.287227 3.204915 2.620430 2.9059656 0.6057987 0.6633198 0.14867500 0.06751667 0.03073333 0.08453333 0.05380000 5.830373e-02 3.202228e-10 FALSE TRUE
ENST00000692867 ENSG00000132600 HEK293_OSMI2_2hA HEK293_TMG_2hB PRMT7 protein_coding retained_intron 54.17378 84.21336 34.49949 2.760923 0.4496835 -1.287227 3.799092 3.372041 3.3485750 0.1820767 0.1687809 -0.01004497 0.07863750 0.04000000 0.09713333 0.05713333 3.202228e-10 3.202228e-10 FALSE TRUE
MSTRG.12877.17 ENSG00000132600 HEK293_OSMI2_2hA HEK293_TMG_2hB PRMT7 protein_coding   54.17378 84.21336 34.49949 2.760923 0.4496835 -1.287227 17.683511 36.490610 9.4672144 0.4416131 0.5463914 -1.94538559 0.29428750 0.43393333 0.27416667 -0.15976667 1.175666e-07 3.202228e-10 FALSE TRUE
MSTRG.12877.6 ENSG00000132600 HEK293_OSMI2_2hA HEK293_TMG_2hB PRMT7 protein_coding   54.17378 84.21336 34.49949 2.760923 0.4496835 -1.287227 6.844622 14.197056 3.3304589 0.8080892 0.4254037 -2.08848944 0.11506250 0.16856667 0.09670000 -0.07186667 1.113471e-02 3.202228e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000132600 E001 0.0000000       16 68310951 68310973 23 +      
ENSG00000132600 E002 0.0000000       16 68310974 68310981 8 +      
ENSG00000132600 E003 0.1817044 0.0393031294 1.000000e+00   16 68310982 68310992 11 + 0.000 0.075 8.882
ENSG00000132600 E004 1.1812489 0.0105305178 4.967546e-01 6.333581e-01 16 68310993 68311009 17 + 0.193 0.329 1.019
ENSG00000132600 E005 2.8648238 0.0061428530 5.579561e-01 6.862768e-01 16 68311010 68311015 6 + 0.428 0.539 0.553
ENSG00000132600 E006 3.0862690 0.0064135641 4.738474e-01 6.127443e-01 16 68311016 68311018 3 + 0.428 0.563 0.660
ENSG00000132600 E007 3.0862690 0.0064135641 4.738474e-01 6.127443e-01 16 68311019 68311021 3 + 0.428 0.563 0.660
ENSG00000132600 E008 3.7861067 0.0144542480 8.999955e-01 9.401973e-01 16 68311022 68311027 6 + 0.580 0.607 0.120
ENSG00000132600 E009 18.8748452 0.0009717107 3.582153e-02 8.323763e-02 16 68311028 68311039 12 + 1.348 1.176 -0.603
ENSG00000132600 E010 20.2044760 0.0009816028 2.598496e-02 6.391801e-02 16 68311040 68311046 7 + 1.379 1.203 -0.618
ENSG00000132600 E011 21.4578328 0.0008701340 2.657727e-02 6.511205e-02 16 68311047 68311049 3 + 1.399 1.228 -0.598
ENSG00000132600 E012 22.7153437 0.0008688600 1.166128e-02 3.272688e-02 16 68311050 68311050 1 + 1.436 1.247 -0.660
ENSG00000132600 E013 22.8625927 0.0008538466 8.037168e-03 2.387408e-02 16 68311051 68311052 2 + 1.445 1.247 -0.690
ENSG00000132600 E014 23.6322610 0.0008336779 3.517110e-03 1.177614e-02 16 68311053 68311053 1 + 1.470 1.256 -0.745
ENSG00000132600 E015 28.4250757 0.0007029975 1.010855e-03 3.996065e-03 16 68311054 68311055 2 + 1.553 1.331 -0.764
ENSG00000132600 E016 32.9870786 0.0006329835 2.690018e-03 9.344235e-03 16 68311056 68311058 3 + 1.592 1.402 -0.652
ENSG00000132600 E017 39.0550425 0.0005483705 1.674129e-02 4.436903e-02 16 68311059 68311062 4 + 1.628 1.487 -0.479
ENSG00000132600 E018 40.2352341 0.0005465148 1.667789e-02 4.423009e-02 16 68311063 68311063 1 + 1.639 1.500 -0.473
ENSG00000132600 E019 59.3123035 0.0003956795 1.619798e-05 1.025930e-04 16 68311064 68311067 4 + 1.851 1.645 -0.697
ENSG00000132600 E020 99.8684866 0.0003029132 7.445330e-07 6.358739e-06 16 68311068 68311069 2 + 2.057 1.872 -0.622
ENSG00000132600 E021 155.1737831 0.0012475862 4.890357e-05 2.762264e-04 16 68311070 68311099 30 + 2.211 2.075 -0.457
ENSG00000132600 E022 45.2315016 0.0010723629 6.009598e-05 3.319340e-04 16 68311100 68311111 12 + 1.743 1.519 -0.762
ENSG00000132600 E023 0.1515154 0.0422878082 1.545798e-01   16 68311112 68311113 2 + 0.193 0.000 -13.708
ENSG00000132600 E024 0.1515154 0.0422878082 1.545798e-01   16 68311114 68311118 5 + 0.193 0.000 -13.708
ENSG00000132600 E025 0.2998086 0.0297115704 4.208073e-01   16 68311119 68311133 15 + 0.193 0.075 -1.567
ENSG00000132600 E026 3.1709620 0.0051091011 7.893029e-01 8.651256e-01 16 68311134 68311246 113 + 0.510 0.562 0.244
ENSG00000132600 E027 5.0111619 0.0033131297 5.944193e-01 7.166556e-01 16 68311247 68311358 112 + 0.639 0.729 0.374
ENSG00000132600 E028 8.1577983 0.0021149168 8.081595e-01 8.781079e-01 16 68311359 68311505 147 + 0.855 0.893 0.147
ENSG00000132600 E029 5.0382330 0.0033119965 3.091967e-01 4.514663e-01 16 68311506 68311745 240 + 0.819 0.680 -0.565
ENSG00000132600 E030 154.8350813 0.0047437332 8.215867e-02 1.629284e-01 16 68312042 68312176 135 + 2.164 2.093 -0.241
ENSG00000132600 E031 0.5149111 0.0214648007 7.328226e-01 8.242117e-01 16 68315195 68315564 370 + 0.193 0.139 -0.564
ENSG00000132600 E032 0.5149111 0.0214648007 7.328226e-01 8.242117e-01 16 68315565 68315649 85 + 0.193 0.139 -0.564
ENSG00000132600 E033 0.2214452 0.0391743401 1.000000e+00   16 68315650 68315841 192 + 0.000 0.075 11.082
ENSG00000132600 E034 0.5944058 0.2912172677 7.447339e-01 8.329614e-01 16 68315842 68315879 38 + 0.193 0.144 -0.515
ENSG00000132600 E035 1.6586714 0.0122854171 2.135315e-01 3.426933e-01 16 68315880 68315896 17 + 0.510 0.290 -1.237
ENSG00000132600 E036 218.3572529 0.0032605602 1.249476e-04 6.364528e-04 16 68315897 68315924 28 + 2.362 2.224 -0.460
ENSG00000132600 E037 226.8882824 0.0037360942 6.727595e-04 2.798811e-03 16 68315925 68315950 26 + 2.369 2.244 -0.418
ENSG00000132600 E038 240.5410270 0.0032816077 3.936592e-02 8.984922e-02 16 68315951 68315978 28 + 2.353 2.284 -0.232
ENSG00000132600 E039 367.3892461 0.0023227416 1.112001e-03 4.343702e-03 16 68315979 68316074 96 + 2.553 2.461 -0.308
ENSG00000132600 E040 239.9826413 0.0013881403 6.645965e-05 3.629979e-04 16 68321426 68321462 37 + 2.385 2.270 -0.386
ENSG00000132600 E041 4.2134643 0.0038393516 7.018057e-06 4.833145e-05 16 68321463 68322475 1013 + 1.044 0.432 -2.565
ENSG00000132600 E042 0.5985731 0.0216307230 3.813601e-02 8.761417e-02 16 68323405 68323497 93 + 0.428 0.075 -3.152
ENSG00000132600 E043 0.4470576 0.0228220229 1.312186e-01 2.358513e-01 16 68323498 68323521 24 + 0.326 0.075 -2.567
ENSG00000132600 E044 1.0360657 0.0483639207 8.095673e-02 1.610320e-01 16 68323522 68323688 167 + 0.510 0.194 -1.991
ENSG00000132600 E045 2.1432202 0.0074083658 1.157650e-02 3.252845e-02 16 68323689 68323982 294 + 0.739 0.329 -1.982
ENSG00000132600 E046 1.9990917 0.0394520626 1.149119e-01 2.127132e-01 16 68323983 68324142 160 + 0.639 0.364 -1.357
ENSG00000132600 E047 1.0424084 0.2095950114 1.167761e-01 2.153582e-01 16 68324143 68324255 113 + 0.511 0.190 -2.027
ENSG00000132600 E048 1.6167550 0.0089000598 2.069318e-02 5.294215e-02 16 68324256 68324682 427 + 0.639 0.245 -2.149
ENSG00000132600 E049 217.2906668 0.0021317331 1.461371e-03 5.511255e-03 16 68324683 68324698 16 + 2.334 2.231 -0.345
ENSG00000132600 E050 350.0284410 0.0014025314 5.615196e-04 2.390307e-03 16 68324699 68324806 108 + 2.529 2.442 -0.290
ENSG00000132600 E051 180.6381678 0.0039870597 4.741559e-03 1.521003e-02 16 68324807 68324832 26 + 2.261 2.150 -0.373
ENSG00000132600 E052 0.2966881 0.0293978346 3.513813e-02   16 68324833 68324865 33 + 0.326 0.000 -14.871
ENSG00000132600 E053 1.8625259 0.2464816234 3.161570e-01 4.589127e-01 16 68328105 68328510 406 + 0.581 0.331 -1.298
ENSG00000132600 E054 335.3871047 0.0012466887 9.345067e-03 2.714497e-02 16 68329066 68329174 109 + 2.493 2.430 -0.210
ENSG00000132600 E055 0.0000000       16 68329175 68329226 52 +      
ENSG00000132600 E056 396.9918839 0.0001381265 1.944717e-01 3.193662e-01 16 68337459 68337571 113 + 2.531 2.512 -0.064
ENSG00000132600 E057 674.7405414 0.0002627525 7.310040e-01 8.227525e-01 16 68339322 68339563 242 + 2.744 2.746 0.007
ENSG00000132600 E058 607.5895987 0.0001485438 8.728509e-01 9.222527e-01 16 68339788 68339968 181 + 2.695 2.700 0.017
ENSG00000132600 E059 486.8423129 0.0010600182 1.713818e-01 2.899917e-01 16 68345675 68345802 128 + 2.571 2.613 0.139
ENSG00000132600 E060 2.5024723 0.0207788005 3.419104e-01 4.858710e-01 16 68346121 68346144 24 + 0.326 0.515 1.023
ENSG00000132600 E061 625.6242332 0.0005747793 1.828643e-02 4.775724e-02 16 68346145 68346280 136 + 2.668 2.724 0.185
ENSG00000132600 E062 246.1213881 0.0003646310 1.855965e-02 4.836409e-02 16 68347211 68347294 84 + 2.247 2.322 0.250
ENSG00000132600 E063 201.0291167 0.0002612027 1.629679e-04 8.046334e-04 16 68347631 68347678 48 + 2.119 2.245 0.424
ENSG00000132600 E064 245.1152634 0.0003028468 4.139270e-08 4.540662e-07 16 68348342 68348406 65 + 2.168 2.337 0.568
ENSG00000132600 E065 221.4770745 0.0002372051 4.086191e-09 5.408108e-08 16 68348407 68348431 25 + 2.107 2.297 0.635
ENSG00000132600 E066 0.9921577 0.0126664625 6.478828e-01 7.594797e-01 16 68348432 68348433 2 + 0.326 0.245 -0.565
ENSG00000132600 E067 1.0234925 0.0163921834 6.503075e-01 7.613659e-01 16 68349646 68349704 59 + 0.326 0.245 -0.563
ENSG00000132600 E068 7.2213662 0.0061065122 2.395393e-01 3.735728e-01 16 68351390 68351415 26 + 0.946 0.800 -0.562
ENSG00000132600 E069 23.2715259 0.0162194307 1.378607e-01 2.450982e-01 16 68351416 68351814 399 + 1.399 1.263 -0.476
ENSG00000132600 E070 6.9787289 0.0026176192 1.947684e-01 3.197121e-01 16 68351815 68351942 128 + 0.946 0.786 -0.616
ENSG00000132600 E071 6.0369953 0.0325084517 2.483573e-01 3.839889e-01 16 68351943 68352029 87 + 0.887 0.718 -0.667
ENSG00000132600 E072 3.3056273 0.0063858568 2.600703e-01 3.975530e-01 16 68352030 68352068 39 + 0.692 0.515 -0.785
ENSG00000132600 E073 5.3122051 0.0033255400 3.659588e-01 5.102882e-01 16 68352069 68352247 179 + 0.819 0.697 -0.494
ENSG00000132600 E074 456.4011163 0.0001258629 5.753377e-10 8.922541e-09 16 68352248 68352315 68 + 2.465 2.603 0.458
ENSG00000132600 E075 460.9485954 0.0001383314 1.725716e-11 3.454843e-10 16 68352316 68352409 94 + 2.461 2.610 0.497
ENSG00000132600 E076 48.3290850 0.0005091365 6.246520e-08 6.603708e-07 16 68352410 68352819 410 + 1.815 1.533 -0.959
ENSG00000132600 E077 46.0264377 0.0027147101 6.191994e-03 1.912007e-02 16 68353395 68353491 97 + 1.711 1.552 -0.542
ENSG00000132600 E078 413.5339992 0.0018513658 1.260440e-06 1.024571e-05 16 68353492 68353566 75 + 2.410 2.566 0.517
ENSG00000132600 E079 50.4125550 0.0004634187 1.586470e-16 6.668560e-15 16 68353567 68354180 614 + 1.915 1.503 -1.396
ENSG00000132600 E080 9.4042306 0.0018140595 1.591293e-04 7.879395e-04 16 68354329 68354350 22 + 1.222 0.824 -1.466
ENSG00000132600 E081 15.0808504 0.0021503210 2.810222e-04 1.302606e-03 16 68354351 68354453 103 + 1.358 1.035 -1.150
ENSG00000132600 E082 38.1385373 0.0005651519 2.230142e-05 1.367559e-04 16 68354454 68354819 366 + 1.691 1.442 -0.851
ENSG00000132600 E083 74.1976058 0.0011216485 7.184969e-09 9.090228e-08 16 68354820 68355697 878 + 1.978 1.719 -0.873
ENSG00000132600 E084 14.9699455 0.0035505193 2.740875e-01 4.131923e-01 16 68355698 68355722 25 + 1.022 1.148 0.457
ENSG00000132600 E085 490.1029534 0.0045079417 1.651528e-06 1.307714e-05 16 68355723 68355833 111 + 2.451 2.645 0.645
ENSG00000132600 E086 341.6816209 0.0045214234 8.697306e-08 8.933412e-07 16 68355834 68355883 50 + 2.262 2.494 0.774
ENSG00000132600 E087 6.9159760 0.0670551980 2.599504e-02 6.393782e-02 16 68355884 68356029 146 + 1.085 0.734 -1.336
ENSG00000132600 E088 6.2386638 0.0028446633 1.083629e-03 4.248117e-03 16 68356030 68356140 111 + 1.066 0.662 -1.564
ENSG00000132600 E089 6.7609577 0.0100892961 2.660351e-01 4.041631e-01 16 68356141 68356215 75 + 0.918 0.773 -0.561
ENSG00000132600 E090 13.6550953 0.0027477255 4.451387e-02 9.930662e-02 16 68356216 68356700 485 + 1.222 1.028 -0.697
ENSG00000132600 E091 411.4347558 0.0029389191 5.648417e-10 8.768955e-09 16 68356701 68356797 97 + 2.349 2.574 0.750
ENSG00000132600 E092 333.0404929 0.0050565168 1.777631e-04 8.685972e-04 16 68357054 68357202 149 + 2.305 2.474 0.562
ENSG00000132600 E093 109.5273754 0.0041084224 7.991654e-01 8.718858e-01 16 68357203 68357770 568 + 1.946 1.967 0.072
ENSG00000132600 E094 5.3618798 0.0397523163 3.113994e-03 1.060122e-02 16 68357771 68357793 23 + 1.044 0.602 -1.744
ENSG00000132600 E095 17.3242392 0.0010433325 1.354582e-03 5.158323e-03 16 68357794 68357967 174 + 1.379 1.111 -0.945
ENSG00000132600 E096 9.5096664 0.0018370338 6.954740e-01 7.960658e-01 16 68357968 68358017 50 + 0.973 0.933 -0.149
ENSG00000132600 E097 9.7496749 0.0017945600 4.091867e-01 5.527964e-01 16 68358018 68358078 61 + 1.022 0.933 -0.330
ENSG00000132600 E098 33.6115512 0.0110620350 3.139655e-04 1.436646e-03 16 68358079 68359179 1101 + 1.655 1.372 -0.970
ENSG00000132600 E099 36.1373623 0.0189367977 1.669333e-02 4.426113e-02 16 68359180 68361312 2133 + 1.633 1.429 -0.700
ENSG00000132600 E100 1.0800860 0.0687872200 9.016253e-02 1.753734e-01 16 68362154 68362357 204 + 0.511 0.194 -1.991