ENSG00000132155

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000251849 ENSG00000132155 HEK293_OSMI2_2hA HEK293_TMG_2hB RAF1 protein_coding protein_coding 64.57408 68.04199 63.06778 5.831544 0.8768537 -0.1095055 31.401300 27.3892541 41.4265107 3.6710689 1.9280719 0.5967659 0.49137917 0.409100000 0.657800000 0.24870000 0.029449170 3.45883e-16 FALSE TRUE
ENST00000687257 ENSG00000132155 HEK293_OSMI2_2hA HEK293_TMG_2hB RAF1 protein_coding retained_intron 64.57408 68.04199 63.06778 5.831544 0.8768537 -0.1095055 1.869280 0.3754442 3.6193147 0.3754442 0.2221809 3.2351032 0.02901667 0.004766667 0.057400000 0.05263333 0.033232864 3.45883e-16 TRUE TRUE
ENST00000691888 ENSG00000132155 HEK293_OSMI2_2hA HEK293_TMG_2hB RAF1 protein_coding protein_coding 64.57408 68.04199 63.06778 5.831544 0.8768537 -0.1095055 3.619212 11.0038243 0.1528345 5.1270571 0.1528345 -6.0797656 0.05264167 0.153000000 0.002366667 -0.15063333 0.001802427 3.45883e-16 FALSE TRUE
ENST00000691899 ENSG00000132155 HEK293_OSMI2_2hA HEK293_TMG_2hB RAF1 protein_coding protein_coding 64.57408 68.04199 63.06778 5.831544 0.8768537 -0.1095055 12.868315 14.6000080 3.9497753 2.7254359 2.5134373 -1.8834665 0.19608333 0.211733333 0.061633333 -0.15010000 0.447609929 3.45883e-16 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000132155 E001 0.1515154 0.0436671577 4.542836e-01   3 12582101 12582115 15 - 0.127 0.000 -9.672
ENSG00000132155 E002 12.7603191 0.0197379634 3.065700e-01 4.487620e-01 3 12582116 12583600 1485 - 1.060 1.180 0.431
ENSG00000132155 E003 1.2532445 0.1000884972 8.839154e-01 9.297690e-01 3 12583601 12583605 5 - 0.371 0.351 -0.122
ENSG00000132155 E004 4.4175637 0.2361565795 4.458036e-01 5.873454e-01 3 12583606 12583607 2 - 0.640 0.804 0.670
ENSG00000132155 E005 7.7709730 0.2190531658 1.811537e-01 3.026689e-01 3 12583608 12583612 5 - 0.730 1.063 1.270
ENSG00000132155 E006 7.7740935 0.2428673952 1.465038e-01 2.569310e-01 3 12583613 12583614 2 - 0.703 1.072 1.418
ENSG00000132155 E007 7.7740935 0.2428673952 1.465038e-01 2.569310e-01 3 12583615 12583615 1 - 0.703 1.072 1.418
ENSG00000132155 E008 9.7991052 0.2316944687 6.262596e-02 1.310625e-01 3 12583616 12583620 5 - 0.731 1.178 1.685
ENSG00000132155 E009 9.7991052 0.2316944687 6.262596e-02 1.310625e-01 3 12583621 12583623 3 - 0.731 1.178 1.685
ENSG00000132155 E010 10.2439847 0.2463450935 6.101165e-02 1.283348e-01 3 12583624 12583629 6 - 0.731 1.200 1.764
ENSG00000132155 E011 10.2439847 0.2463450935 6.101165e-02 1.283348e-01 3 12583630 12583633 4 - 0.731 1.200 1.764
ENSG00000132155 E012 10.5708618 0.2207082474 6.316796e-02 1.319883e-01 3 12583634 12583637 4 - 0.757 1.210 1.690
ENSG00000132155 E013 10.5708618 0.2207082474 6.316796e-02 1.319883e-01 3 12583638 12583638 1 - 0.757 1.210 1.690
ENSG00000132155 E014 12.5637125 0.0930391142 9.659465e-02 1.852520e-01 3 12583639 12583641 3 - 0.925 1.253 1.186
ENSG00000132155 E015 14.1222771 0.0370894491 3.456332e-02 8.083249e-02 3 12583642 12583643 2 - 0.991 1.297 1.098
ENSG00000132155 E016 52.8488716 0.0130114571 2.525907e-02 6.240397e-02 3 12583644 12583648 5 - 1.622 1.802 0.610
ENSG00000132155 E017 81.0469957 0.0110492884 3.189916e-04 1.456930e-03 3 12583649 12583656 8 - 1.757 2.006 0.840
ENSG00000132155 E018 162.5351017 0.0056219300 1.070752e-04 5.546463e-04 3 12583657 12583698 42 - 2.095 2.287 0.643
ENSG00000132155 E019 161.3531364 0.0039171371 2.402807e-05 1.463727e-04 3 12583699 12583700 2 - 2.095 2.283 0.630
ENSG00000132155 E020 178.6619149 0.0045512326 5.013059e-06 3.567786e-05 3 12583701 12583718 18 - 2.125 2.333 0.695
ENSG00000132155 E021 190.9845236 0.0021003367 2.457447e-09 3.388819e-08 3 12583719 12583739 21 - 2.149 2.366 0.724
ENSG00000132155 E022 214.7442897 0.0031463218 2.516800e-05 1.524931e-04 3 12583740 12583762 23 - 2.233 2.400 0.556
ENSG00000132155 E023 182.4220878 0.0033850698 7.954907e-04 3.243582e-03 3 12583763 12583763 1 - 2.179 2.321 0.473
ENSG00000132155 E024 180.7277486 0.0029326627 4.063848e-03 1.332117e-02 3 12583764 12583766 3 - 2.190 2.309 0.398
ENSG00000132155 E025 305.8610977 0.0028003703 6.279055e-09 8.046185e-08 3 12583767 12583811 45 - 2.361 2.564 0.675
ENSG00000132155 E026 250.9524091 0.0004100791 6.486192e-22 5.115693e-20 3 12583812 12583826 15 - 2.246 2.495 0.832
ENSG00000132155 E027 456.7943929 0.0001699497 1.766105e-28 2.601736e-26 3 12583827 12583919 93 - 2.534 2.741 0.688
ENSG00000132155 E028 277.2438161 0.0002109733 1.474668e-14 4.743147e-13 3 12583920 12583927 8 - 2.335 2.517 0.609
ENSG00000132155 E029 1742.5805717 0.0007716633 1.705227e-20 1.155814e-18 3 12583928 12584657 730 - 3.153 3.297 0.478
ENSG00000132155 E030 329.4186690 0.0013190037 3.913398e-02 8.943542e-02 3 12584847 12584888 42 - 2.482 2.544 0.204
ENSG00000132155 E031 494.2590909 0.0001889128 6.120416e-07 5.323177e-06 3 12584889 12584981 93 - 2.640 2.734 0.314
ENSG00000132155 E032 9.3143103 0.0697223264 8.411633e-02 1.659957e-01 3 12584982 12585121 140 - 0.807 1.130 1.207
ENSG00000132155 E033 568.9832326 0.0001502493 1.531073e-03 5.736904e-03 3 12585122 12585253 132 - 2.722 2.781 0.196
ENSG00000132155 E034 52.1821267 0.0004329594 1.065837e-12 2.602056e-11 3 12585254 12585406 153 - 1.883 1.542 -1.157
ENSG00000132155 E035 63.1795591 0.0032617678 5.834775e-18 2.940624e-16 3 12585407 12585680 274 - 2.002 1.546 -1.541
ENSG00000132155 E036 429.6067382 0.0012565771 2.163142e-01 3.459723e-01 3 12585681 12585781 101 - 2.612 2.647 0.116
ENSG00000132155 E037 223.3409488 0.0019635955 9.940531e-02 1.895773e-01 3 12585782 12585799 18 - 2.315 2.372 0.191
ENSG00000132155 E038 32.4298979 0.0019604157 5.412470e-07 4.755920e-06 3 12585800 12585819 20 - 1.669 1.355 -1.078
ENSG00000132155 E039 107.2295757 0.0002884557 6.856178e-27 8.752577e-25 3 12585820 12586274 455 - 2.200 1.833 -1.233
ENSG00000132155 E040 41.1600413 0.0006582689 5.444995e-11 1.004517e-09 3 12586275 12586344 70 - 1.787 1.431 -1.211
ENSG00000132155 E041 73.0343389 0.0004151822 3.199430e-14 9.776169e-13 3 12586345 12586640 296 - 2.015 1.706 -1.041
ENSG00000132155 E042 56.1902460 0.0158035041 5.319656e-05 2.977320e-04 3 12586641 12586846 206 - 1.900 1.591 -1.048
ENSG00000132155 E043 115.7979622 0.0018881288 1.837838e-30 3.203063e-28 3 12586847 12587590 744 - 2.262 1.810 -1.515
ENSG00000132155 E044 304.3411228 0.0001430846 2.956008e-02 7.109574e-02 3 12587591 12587637 47 - 2.453 2.508 0.182
ENSG00000132155 E045 14.7626062 0.0011999413 4.780567e-03 1.531908e-02 3 12587638 12587978 341 - 1.314 1.078 -0.839
ENSG00000132155 E046 52.5473710 0.0045052655 2.699103e-18 1.408254e-16 3 12587979 12589894 1916 - 1.944 1.425 -1.762
ENSG00000132155 E047 5.7141940 0.0122295853 3.379051e-03 1.137631e-02 3 12589895 12590085 191 - 1.006 0.616 -1.545
ENSG00000132155 E048 15.6964110 0.0020465094 8.694999e-11 1.550929e-09 3 12590086 12590797 712 - 1.458 0.879 -2.076
ENSG00000132155 E049 590.8924712 0.0025284924 9.408481e-01 9.668244e-01 3 12590798 12590974 177 - 2.769 2.771 0.007
ENSG00000132155 E050 8.3395369 0.0233405197 2.711281e-06 2.049820e-05 3 12590975 12591176 202 - 1.219 0.581 -2.467
ENSG00000132155 E051 12.0602202 0.0019667609 5.148976e-05 2.892045e-04 3 12591177 12591707 531 - 1.285 0.897 -1.405
ENSG00000132155 E052 397.6854888 0.0008708277 8.036798e-01 8.750623e-01 3 12591708 12591775 68 - 2.599 2.601 0.006
ENSG00000132155 E053 246.0242408 0.0011140543 9.739866e-01 9.877668e-01 3 12591776 12591789 14 - 2.389 2.396 0.023
ENSG00000132155 E054 230.5912558 0.0004056319 7.338308e-01 8.249881e-01 3 12591790 12591792 3 - 2.365 2.366 0.003
ENSG00000132155 E055 3.0872034 0.0049982428 6.411839e-01 7.542822e-01 3 12591793 12591851 59 - 0.569 0.648 0.349
ENSG00000132155 E056 4.5394095 0.0041913109 8.173329e-02 1.622734e-01 3 12591852 12592822 971 - 0.850 0.616 -0.957
ENSG00000132155 E057 1.0382438 0.0119245174 3.676781e-02 8.502455e-02 3 12598936 12599112 177 - 0.481 0.118 -2.696
ENSG00000132155 E058 4.0253128 0.0081932531 9.553502e-01 9.759830e-01 3 12599113 12599225 113 - 0.704 0.705 0.003
ENSG00000132155 E059 4.3040337 0.0206437441 4.584979e-02 1.017609e-01 3 12599226 12599690 465 - 0.871 0.581 -1.193
ENSG00000132155 E060 249.2157467 0.0001908677 7.430539e-01 8.318078e-01 3 12599691 12599702 12 - 2.398 2.400 0.007
ENSG00000132155 E061 464.4183616 0.0017141593 1.717420e-01 2.904782e-01 3 12599703 12599806 104 - 2.683 2.652 -0.104
ENSG00000132155 E062 244.2864562 0.0032971367 6.150945e-02 1.291754e-01 3 12599807 12599808 2 - 2.422 2.357 -0.216
ENSG00000132155 E063 2.1539060 0.0078351265 3.265805e-03 1.104895e-02 3 12599809 12600151 343 - 0.704 0.211 -2.695
ENSG00000132155 E064 399.6595506 0.0022023393 2.901946e-02 7.004714e-02 3 12600152 12600204 53 - 2.633 2.573 -0.198
ENSG00000132155 E065 460.8468420 0.0004112154 8.142641e-09 1.020710e-07 3 12600205 12600267 63 - 2.717 2.616 -0.336
ENSG00000132155 E066 274.7104734 0.0014927142 9.986161e-07 8.285951e-06 3 12600268 12600279 12 - 2.508 2.376 -0.439
ENSG00000132155 E067 3.6683642 0.0044739365 6.902385e-03 2.097117e-02 3 12600280 12600387 108 - 0.850 0.459 -1.696
ENSG00000132155 E068 321.8655597 0.0006354739 1.536827e-09 2.201159e-08 3 12600388 12600415 28 - 2.577 2.446 -0.434
ENSG00000132155 E069 8.7492872 0.0133097852 1.294749e-02 3.578977e-02 3 12600416 12601364 949 - 1.130 0.841 -1.073
ENSG00000132155 E070 3.0089458 0.0304556523 2.201036e-02 5.569904e-02 3 12603478 12603537 60 - 0.783 0.408 -1.700
ENSG00000132155 E071 584.5760808 0.0001205474 8.957447e-22 6.943378e-20 3 12604136 12604289 154 - 2.838 2.702 -0.452
ENSG00000132155 E072 2.0346533 0.0937933014 9.345799e-01 9.628030e-01 3 12604290 12605087 798 - 0.481 0.462 -0.098
ENSG00000132155 E073 0.2955422 0.0287681499 9.451392e-01   3 12605263 12605825 563 - 0.126 0.118 -0.113
ENSG00000132155 E074 1.7099809 0.0182294258 2.944480e-01 4.355473e-01 3 12605826 12606048 223 - 0.527 0.352 -0.921
ENSG00000132155 E075 1.2209898 0.0105929425 6.517050e-02 1.353218e-01 3 12606049 12606200 152 - 0.126 0.459 2.474
ENSG00000132155 E076 406.1119700 0.0008417283 4.328207e-09 5.702126e-08 3 12606201 12606299 99 - 2.673 2.549 -0.414
ENSG00000132155 E077 0.5869318 0.2846594381 9.047234e-01 9.433337e-01 3 12606508 12606622 115 - 0.224 0.207 -0.147
ENSG00000132155 E078 0.2966881 0.0272066427 1.787765e-01   3 12607918 12607974 57 - 0.224 0.000 -13.077
ENSG00000132155 E079 1.4382703 0.0170522603 5.672277e-01 6.940713e-01 3 12608446 12608765 320 - 0.304 0.410 0.631
ENSG00000132155 E080 546.3781835 0.0002435754 1.117310e-11 2.309055e-10 3 12608766 12608923 158 - 2.792 2.689 -0.345
ENSG00000132155 E081 0.2924217 0.0272298225 1.788362e-01   3 12608924 12609164 241 - 0.224 0.000 -13.076
ENSG00000132155 E082 2.7525902 0.1563055223 3.421911e-01 4.861861e-01 3 12609165 12609232 68 - 0.675 0.461 -0.982
ENSG00000132155 E083 360.7887119 0.0011566233 1.372147e-04 6.912621e-04 3 12609233 12609335 103 - 2.604 2.516 -0.292
ENSG00000132155 E084 281.7186804 0.0020341065 4.163150e-05 2.389486e-04 3 12611950 12612008 59 - 2.512 2.393 -0.398
ENSG00000132155 E085 254.2862810 0.0030239415 3.375832e-04 1.530699e-03 3 12612009 12612062 54 - 2.468 2.347 -0.403
ENSG00000132155 E086 0.8147328 0.1279493155 7.545847e-01 8.401684e-01 3 12612063 12612098 36 - 0.225 0.287 0.466
ENSG00000132155 E087 1.7327935 0.0089255712 2.638744e-01 4.017925e-01 3 12618485 12618514 30 - 0.304 0.504 1.113
ENSG00000132155 E088 432.6803946 0.0038982796 1.962051e-04 9.476458e-04 3 12618515 12618747 233 - 2.701 2.574 -0.422
ENSG00000132155 E089 0.9556260 0.0147162183 9.032370e-01 9.424277e-01 3 12622903 12622995 93 - 0.304 0.288 -0.111
ENSG00000132155 E090 1.5478694 0.0088896442 4.342121e-01 5.765968e-01 3 12626327 12626419 93 - 0.481 0.353 -0.696
ENSG00000132155 E091 0.0000000       3 12629622 12629724 103 -      
ENSG00000132155 E092 1.3138379 0.2853947694 8.920635e-01 9.350700e-01 3 12648570 12649086 517 - 0.370 0.355 -0.091
ENSG00000132155 E093 1.2649876 0.1680803656 5.426042e-02 1.167007e-01 3 12661337 12662601 1265 - 0.528 0.120 -2.904
ENSG00000132155 E094 0.1482932 0.0408088901 5.277342e-01   3 12662602 12662724 123 - 0.000 0.118 10.942
ENSG00000132155 E095 0.0000000       3 12662725 12663060 336 -      
ENSG00000132155 E096 0.1817044 0.0406260337 5.244511e-01   3 12663098 12663368 271 - 0.000 0.118 10.948
ENSG00000132155 E097 0.1817044 0.0406260337 5.244511e-01   3 12663369 12663508 140 - 0.000 0.118 10.948
ENSG00000132155 E098 323.0640017 0.0085195329 1.623661e-03 6.037011e-03 3 12663813 12664201 389 - 2.587 2.433 -0.512