ENSG00000131626

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000253925 ENSG00000131626 HEK293_OSMI2_2hA HEK293_TMG_2hB PPFIA1 protein_coding protein_coding 21.70102 11.98382 29.53611 0.9378244 0.5722176 1.300677 2.126769 2.8115179 0.000000 0.03053131 0.00000000 -8.14032769 0.11909167 0.2373667 0.00000000 -0.23736667 1.314882e-46 1.314882e-46 FALSE TRUE
ENST00000389547 ENSG00000131626 HEK293_OSMI2_2hA HEK293_TMG_2hB PPFIA1 protein_coding protein_coding 21.70102 11.98382 29.53611 0.9378244 0.5722176 1.300677 10.980060 4.1883887 16.143028 0.54533764 0.65712660 1.94389702 0.47884167 0.3506000 0.54666667 0.19606667 7.905756e-03 1.314882e-46 FALSE TRUE
ENST00000532024 ENSG00000131626 HEK293_OSMI2_2hA HEK293_TMG_2hB PPFIA1 protein_coding protein_coding 21.70102 11.98382 29.53611 0.9378244 0.5722176 1.300677 1.175458 0.0000000 1.907086 0.00000000 0.42194708 7.58277099 0.04433333 0.0000000 0.06446667 0.06446667 1.969724e-08 1.314882e-46 FALSE FALSE
ENST00000532793 ENSG00000131626 HEK293_OSMI2_2hA HEK293_TMG_2hB PPFIA1 protein_coding retained_intron 21.70102 11.98382 29.53611 0.9378244 0.5722176 1.300677 1.062680 1.3719333 1.117516 0.30124983 0.02750539 -0.29354037 0.05912917 0.1118667 0.03786667 -0.07400000 9.179722e-05 1.314882e-46 FALSE TRUE
MSTRG.5871.1 ENSG00000131626 HEK293_OSMI2_2hA HEK293_TMG_2hB PPFIA1 protein_coding   21.70102 11.98382 29.53611 0.9378244 0.5722176 1.300677 1.251393 0.5167828 4.123091 0.51678275 0.31185922 2.97194118 0.05782917 0.0382000 0.14000000 0.10180000 1.400297e-01 1.314882e-46 FALSE TRUE
MSTRG.5871.11 ENSG00000131626 HEK293_OSMI2_2hA HEK293_TMG_2hB PPFIA1 protein_coding   21.70102 11.98382 29.53611 0.9378244 0.5722176 1.300677 1.791235 1.5223291 1.449399 0.50121693 0.11971835 -0.07035137 0.08805417 0.1342667 0.04926667 -0.08500000 3.187397e-01 1.314882e-46 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000131626 E001 0.1515154 0.0422827832 1.000000e+00   11 70270681 70270689 9 + 0.088 0.000 -11.319
ENSG00000131626 E002 0.7406253 0.0154971475 9.105844e-02 1.768002e-01 11 70270690 70270700 11 + 0.328 0.000 -13.622
ENSG00000131626 E003 3.5388117 0.0045593974 2.421728e-05 1.473879e-04 11 70270701 70270716 16 + 0.807 0.000 -15.885
ENSG00000131626 E004 11.8994437 0.0014261634 9.788491e-10 1.454546e-08 11 70270717 70270772 56 + 1.258 0.459 -3.188
ENSG00000131626 E005 28.5321134 0.0008805646 1.034033e-08 1.270721e-07 11 70270773 70270914 142 + 1.569 1.136 -1.507
ENSG00000131626 E006 1.2586448 0.0195395559 1.880612e-01 3.112861e-01 11 70271212 70271219 8 + 0.411 0.167 -1.746
ENSG00000131626 E007 2.1444428 0.0067574612 2.085053e-02 5.327207e-02 11 70271220 70271281 62 + 0.594 0.167 -2.640
ENSG00000131626 E008 2.2896155 0.0063443544 1.441866e-02 3.917523e-02 11 70271282 70271319 38 + 0.619 0.167 -2.747
ENSG00000131626 E009 1.9637957 0.0070340640 2.998483e-02 7.193015e-02 11 70271907 70271921 15 + 0.569 0.167 -2.525
ENSG00000131626 E010 7.7422622 0.0065222213 1.611860e-04 7.972066e-04 11 70271922 70272172 251 + 1.056 0.525 -2.142
ENSG00000131626 E011 41.8892171 0.0036034222 7.878833e-06 5.359887e-05 11 70272173 70272227 55 + 1.702 1.414 -0.986
ENSG00000131626 E012 128.3314366 0.0077673281 1.200844e-03 4.643255e-03 11 70272228 70272436 209 + 2.149 1.986 -0.546
ENSG00000131626 E013 0.6244956 0.0203011274 4.928739e-01 6.299909e-01 11 70322397 70322554 158 + 0.162 0.288 1.059
ENSG00000131626 E014 108.9562704 0.0065437580 5.291008e-04 2.268360e-03 11 70324402 70324503 102 + 2.080 1.908 -0.578
ENSG00000131626 E015 136.6989325 0.0074586900 2.363784e-04 1.118244e-03 11 70324847 70325011 165 + 2.180 1.999 -0.607
ENSG00000131626 E016 112.0370279 0.0005902801 2.304776e-07 2.183929e-06 11 70325500 70325574 75 + 2.095 1.913 -0.611
ENSG00000131626 E017 101.8279784 0.0072022310 9.821137e-03 2.832285e-02 11 70326262 70326343 82 + 2.040 1.912 -0.429
ENSG00000131626 E018 69.3039765 0.0020168739 1.007373e-03 3.984045e-03 11 70326344 70326363 20 + 1.881 1.729 -0.512
ENSG00000131626 E019 183.6770472 0.0018492500 4.511042e-04 1.970903e-03 11 70326597 70326818 222 + 2.286 2.179 -0.357
ENSG00000131626 E020 0.1515154 0.0422827832 1.000000e+00   11 70327554 70327714 161 + 0.088 0.000 -11.301
ENSG00000131626 E021 0.2944980 0.3314916113 5.647513e-01   11 70329893 70330172 280 + 0.161 0.000 -12.299
ENSG00000131626 E022 147.7353493 0.0026762125 2.296502e-04 1.090472e-03 11 70330173 70330319 147 + 2.198 2.065 -0.446
ENSG00000131626 E023 148.6125085 0.0075028909 1.840829e-02 4.802847e-02 11 70331960 70332094 135 + 2.193 2.086 -0.359
ENSG00000131626 E024 0.0000000       11 70333022 70333096 75 +      
ENSG00000131626 E025 129.8646420 0.0061753325 2.196545e-01 3.499733e-01 11 70333470 70333553 84 + 2.117 2.068 -0.165
ENSG00000131626 E026 0.4439371 0.0215568338 2.580453e-01 3.952480e-01 11 70334352 70334632 281 + 0.224 0.000 -12.885
ENSG00000131626 E027 107.4417975 0.0003854184 1.011668e-01 1.922553e-01 11 70335563 70335612 50 + 2.035 1.988 -0.155
ENSG00000131626 E028 118.1332363 0.0003066537 2.593284e-01 3.967051e-01 11 70335613 70335694 82 + 2.068 2.043 -0.084
ENSG00000131626 E029 82.7062130 0.0003347660 7.495321e-03 2.249986e-02 11 70337365 70337396 32 + 1.938 1.840 -0.330
ENSG00000131626 E030 93.5003553 0.0003190543 9.875525e-02 1.885881e-01 11 70337397 70337427 31 + 1.976 1.925 -0.169
ENSG00000131626 E031 110.2873835 0.0022757707 1.862068e-01 3.089806e-01 11 70338374 70338434 61 + 2.045 2.004 -0.137
ENSG00000131626 E032 68.7112234 0.0018831660 7.090851e-01 8.065543e-01 11 70338435 70338453 19 + 1.831 1.827 -0.012
ENSG00000131626 E033 120.3030601 0.0059464127 5.520943e-01 6.814478e-01 11 70339171 70339306 136 + 2.075 2.063 -0.040
ENSG00000131626 E034 0.2966881 0.0290785164 4.694911e-01   11 70339307 70339311 5 + 0.162 0.000 -12.300
ENSG00000131626 E035 0.0000000       11 70340977 70340995 19 +      
ENSG00000131626 E036 0.0000000       11 70340996 70341006 11 +      
ENSG00000131626 E037 0.0000000       11 70341007 70341097 91 +      
ENSG00000131626 E038 0.5975289 0.0280129441 1.526857e-01 2.653284e-01 11 70341873 70342143 271 + 0.279 0.000 -13.301
ENSG00000131626 E039 86.3591080 0.0104546507 3.018713e-01 4.436902e-01 11 70343669 70343750 82 + 1.945 1.899 -0.154
ENSG00000131626 E040 117.3622956 0.0022343502 3.760337e-01 5.204141e-01 11 70343751 70343892 142 + 2.067 2.046 -0.072
ENSG00000131626 E041 0.1817044 0.0392282942 2.427021e-01   11 70345915 70346009 95 + 0.000 0.167 13.146
ENSG00000131626 E042 137.5624334 0.0002660359 3.031196e-01 4.450247e-01 11 70348189 70348374 186 + 2.134 2.115 -0.063
ENSG00000131626 E043 78.7300527 0.0016114075 1.940087e-01 3.188246e-01 11 70348375 70348420 46 + 1.900 1.855 -0.153
ENSG00000131626 E044 33.5257624 0.0012307817 7.205728e-02 1.467522e-01 11 70349923 70350039 117 + 1.556 1.451 -0.358
ENSG00000131626 E045 4.1558146 0.0381628154 5.717409e-01 6.979798e-01 11 70350994 70351023 30 + 0.723 0.635 -0.369
ENSG00000131626 E046 0.8846520 0.0135263264 3.697615e-01 5.141639e-01 11 70354203 70354300 98 + 0.328 0.167 -1.263
ENSG00000131626 E047 69.1356539 0.0066124195 1.264357e-01 2.291876e-01 11 70354301 70354321 21 + 1.853 1.776 -0.262
ENSG00000131626 E048 143.2889626 0.0045705502 4.852870e-02 1.065605e-01 11 70354322 70354452 131 + 2.168 2.093 -0.250
ENSG00000131626 E049 118.9692183 0.0021503779 1.488476e-01 2.601072e-01 11 70355639 70355703 65 + 2.077 2.033 -0.150
ENSG00000131626 E050 141.5620650 0.0002195242 1.085489e-01 2.034032e-01 11 70355704 70355811 108 + 2.151 2.115 -0.122
ENSG00000131626 E051 134.9603581 0.0008915536 7.434385e-01 8.320665e-01 11 70356161 70356254 94 + 2.108 2.133 0.083
ENSG00000131626 E052 107.5106238 0.0021595032 1.642411e-01 2.806844e-01 11 70362095 70362134 40 + 1.994 2.064 0.238
ENSG00000131626 E053 99.9683509 0.0009250192 1.833515e-02 4.786600e-02 11 70362135 70362176 42 + 1.947 2.051 0.350
ENSG00000131626 E054 206.7123525 0.0002198348 6.779887e-01 7.825539e-01 11 70362288 70362488 201 + 2.290 2.315 0.082
ENSG00000131626 E055 13.9396698 0.0047001624 2.912584e-04 1.344232e-03 11 70362489 70362795 307 + 0.981 1.337 1.276
ENSG00000131626 E056 2.2133404 0.0066590860 3.411599e-01 4.850717e-01 11 70364342 70365372 1031 + 0.541 0.382 -0.814
ENSG00000131626 E057 6.0497811 0.0026938600 3.626435e-02 8.409023e-02 11 70365373 70365435 63 + 0.914 0.632 -1.132
ENSG00000131626 E058 2.0711995 0.0069580472 3.384269e-01 4.822847e-01 11 70365436 70365940 505 + 0.411 0.582 0.837
ENSG00000131626 E059 0.2966881 0.0290785164 4.694911e-01   11 70365941 70365967 27 + 0.162 0.000 -12.300
ENSG00000131626 E060 2.0952336 0.0097083875 2.339937e-01 3.671293e-01 11 70367506 70367629 124 + 0.371 0.583 1.063
ENSG00000131626 E061 2.5131345 0.0445135013 9.826386e-01 9.932131e-01 11 70371327 70372211 885 + 0.512 0.528 0.074
ENSG00000131626 E062 5.5994377 0.0030842870 7.447305e-01 8.329614e-01 11 70372212 70372214 3 + 0.822 0.790 -0.125
ENSG00000131626 E063 228.5356240 0.0012638622 7.191743e-01 8.140835e-01 11 70372215 70372390 176 + 2.343 2.346 0.011
ENSG00000131626 E064 176.0698224 0.0002246381 1.073605e-02 3.053624e-02 11 70372477 70372574 98 + 2.198 2.283 0.282
ENSG00000131626 E065 1.0298247 0.0124915531 2.611699e-01 3.988027e-01 11 70374660 70374829 170 + 0.371 0.167 -1.526
ENSG00000131626 E066 238.9465183 0.0002594382 1.091671e-04 5.642323e-04 11 70374918 70375093 176 + 2.321 2.428 0.356
ENSG00000131626 E067 159.2653268 0.0034575958 3.601308e-03 1.201474e-02 11 70376532 70376600 69 + 2.137 2.266 0.434
ENSG00000131626 E068 137.3235115 0.0034468923 7.891721e-05 4.228119e-04 11 70378030 70378077 48 + 2.051 2.228 0.590
ENSG00000131626 E069 181.1797315 0.0002129368 3.305076e-10 5.340185e-09 11 70378078 70378195 118 + 2.167 2.350 0.611
ENSG00000131626 E070 20.7482938 0.0024564825 9.623346e-11 1.702572e-09 11 70378196 70378580 385 + 1.056 1.576 1.822
ENSG00000131626 E071 115.5103684 0.0003176925 1.238643e-01 2.254714e-01 11 70382088 70382158 71 + 2.025 2.092 0.223
ENSG00000131626 E072 549.5337657 0.0048735109 1.821390e-16 7.588672e-15 11 70383003 70386577 3575 + 2.590 2.889 0.996