ENSG00000131051

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000361162 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding protein_coding 135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 26.619518 16.246652 40.3546275 1.8172333 3.9083280 1.3120614 0.19921667 0.24443333 0.1939666667 -0.05046667 4.302398e-01 2.291122e-20 FALSE  
ENST00000444878 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding nonsense_mediated_decay 135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 7.688178 0.000000 18.1856106 0.0000000 4.5884650 10.8293747 0.04048333 0.00000000 0.0866666667 0.08666667 9.192908e-16 2.291122e-20 FALSE  
ENST00000461283 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding retained_intron 135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 13.047696 9.103785 13.4812551 1.8770364 1.5885958 0.5659023 0.11847917 0.13813333 0.0650333333 -0.07310000 1.073394e-01 2.291122e-20 FALSE  
ENST00000463004 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding retained_intron 135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 8.656293 1.441238 15.3843901 0.2440404 0.3401089 3.4070486 0.05456250 0.02223333 0.0739666667 0.05173333 6.693032e-06 2.291122e-20 FALSE  
ENST00000490354 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding retained_intron 135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 2.257426 7.110974 0.8749283 4.0121590 0.2025218 -3.0084421 0.02890417 0.09903333 0.0042333333 -0.09480000 4.451892e-01 2.291122e-20    
ENST00000494274 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding processed_transcript 135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 6.415427 0.000000 12.5508459 0.0000000 2.3469264 10.2947179 0.03078333 0.00000000 0.0599666667 0.05996667 2.291122e-20 2.291122e-20 FALSE  
ENST00000495293 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding retained_intron 135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 1.699096 3.710121 0.1132984 0.4776105 0.1132984 -4.9151232 0.02057917 0.05596667 0.0005333333 -0.05543333 1.144067e-04 2.291122e-20 FALSE  
ENST00000528062 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding protein_coding 135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 8.434504 3.536969 10.6603492 0.2523110 1.2582684 1.5889489 0.06362083 0.05410000 0.0510000000 -0.00310000 9.389586e-01 2.291122e-20 FALSE  
MSTRG.20649.12 ENSG00000131051 HEK293_OSMI2_2hA HEK293_TMG_2hB RBM39 protein_coding   135.8883 66.64964 208.3288 6.478346 4.051893 1.644046 8.835073 4.445426 19.6461745 1.1866497 1.2247975 2.1413474 0.06597083 0.06973333 0.0944000000 0.02466667 5.728262e-01 2.291122e-20 TRUE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000131051 E001 1.9626472 7.358648e-03 2.825866e-01 4.226050e-01 20 35701347 35703223 1877 - 0.372 0.572 1.013
ENSG00000131051 E002 1.4674297 9.740499e-03 2.688485e-01 4.073201e-01 20 35703224 35703608 385 - 0.294 0.504 1.177
ENSG00000131051 E003 0.8836199 1.419986e-01 7.838320e-01 8.613177e-01 20 35703609 35703609 1 - 0.249 0.317 0.478
ENSG00000131051 E004 2.4398952 8.891037e-03 3.814383e-01 5.257355e-01 20 35703610 35703610 1 - 0.468 0.631 0.758
ENSG00000131051 E005 386.4488283 6.427976e-03 7.088970e-07 6.079602e-06 20 35703611 35703897 287 - 2.465 2.706 0.804
ENSG00000131051 E006 674.7048817 2.887467e-03 3.531834e-08 3.919735e-07 20 35703898 35704325 428 - 2.729 2.912 0.606
ENSG00000131051 E007 145.9195596 7.095405e-03 1.610908e-04 7.968605e-04 20 35704326 35704327 2 - 2.052 2.268 0.725
ENSG00000131051 E008 183.4373939 4.512341e-03 3.626017e-07 3.297988e-06 20 35704328 35704376 49 - 2.142 2.379 0.793
ENSG00000131051 E009 213.0649465 3.241095e-03 1.230501e-11 2.525346e-10 20 35704377 35704399 23 - 2.192 2.465 0.911
ENSG00000131051 E010 174.3216062 8.856165e-04 1.109312e-25 1.294062e-23 20 35704400 35704404 5 - 2.074 2.416 1.143
ENSG00000131051 E011 657.6849574 1.558998e-03 8.195025e-36 2.106544e-33 20 35704405 35704581 177 - 2.662 2.977 1.049
ENSG00000131051 E012 415.7747170 4.119933e-03 1.455906e-16 6.144285e-15 20 35704668 35704702 35 - 2.462 2.781 1.065
ENSG00000131051 E013 423.2463260 1.475723e-03 1.138769e-32 2.329767e-30 20 35704703 35704746 44 - 2.467 2.792 1.083
ENSG00000131051 E014 10.5887178 9.479119e-03 5.276951e-04 2.263204e-03 20 35704747 35705224 478 - 0.880 1.278 1.447
ENSG00000131051 E015 468.5044697 1.293958e-04 4.420795e-44 1.929738e-41 20 35705225 35705261 37 - 2.539 2.803 0.878
ENSG00000131051 E016 669.3928680 5.728226e-04 1.095750e-13 3.095536e-12 20 35705262 35705330 69 - 2.737 2.894 0.522
ENSG00000131051 E017 2.3345782 6.524391e-03 9.705032e-01 9.855534e-01 20 35705331 35705399 69 - 0.496 0.503 0.038
ENSG00000131051 E018 486.9166445 5.970439e-04 9.546112e-02 1.835687e-01 20 35707120 35707135 16 - 2.635 2.691 0.186
ENSG00000131051 E019 572.8315297 2.735103e-04 6.481252e-04 2.709477e-03 20 35707136 35707201 66 - 2.696 2.777 0.268
ENSG00000131051 E020 92.8419118 2.629291e-02 4.693154e-03 1.507722e-02 20 35707202 35707939 738 - 1.991 1.778 -0.718
ENSG00000131051 E021 21.9127863 1.111119e-03 1.844436e-03 6.741061e-03 20 35707940 35707992 53 - 1.388 1.133 -0.897
ENSG00000131051 E022 42.7620948 2.395447e-03 1.063789e-16 4.560569e-15 20 35708804 35708991 188 - 1.720 1.057 -2.310
ENSG00000131051 E023 14.1286918 1.242959e-03 3.396854e-07 3.108510e-06 20 35708992 35709032 41 - 1.256 0.632 -2.376
ENSG00000131051 E024 29.2826101 6.417866e-04 9.801792e-10 1.456180e-08 20 35709033 35709223 191 - 1.545 1.035 -1.791
ENSG00000131051 E025 424.5620006 1.615485e-04 3.188480e-07 2.933553e-06 20 35709224 35709256 33 - 2.554 2.672 0.393
ENSG00000131051 E026 160.0555961 1.945117e-04 1.954942e-07 1.876845e-06 20 35709257 35709274 18 - 2.110 2.285 0.587
ENSG00000131051 E027 8.8669957 1.869755e-03 5.896072e-03 1.833812e-02 20 35709275 35709309 35 - 1.036 0.684 -1.366
ENSG00000131051 E028 24.3061368 7.928013e-04 1.361195e-03 5.180489e-03 20 35710283 35710420 138 - 1.430 1.182 -0.868
ENSG00000131051 E029 13.5958087 1.629246e-03 3.857709e-06 2.816957e-05 20 35710421 35710566 146 - 1.237 0.684 -2.087
ENSG00000131051 E030 538.9176154 1.097167e-04 1.727773e-06 1.362874e-05 20 35713019 35713096 78 - 2.664 2.765 0.336
ENSG00000131051 E031 32.5020644 1.021127e-02 8.936064e-01 9.359436e-01 20 35713097 35713293 197 - 1.481 1.488 0.025
ENSG00000131051 E032 12.9401002 1.441449e-03 8.437370e-01 9.027132e-01 20 35713294 35713317 24 - 1.094 1.133 0.140
ENSG00000131051 E033 18.7633103 9.895593e-04 3.406985e-01 4.846404e-01 20 35713318 35713407 90 - 1.227 1.327 0.350
ENSG00000131051 E034 9.7674460 4.417727e-03 6.810223e-01 7.848313e-01 20 35713408 35713415 8 - 0.970 1.036 0.243
ENSG00000131051 E035 33.1999384 1.449482e-02 8.587780e-01 9.129025e-01 20 35713702 35713831 130 - 1.494 1.495 0.004
ENSG00000131051 E036 23.1583563 2.028046e-02 5.503460e-01 6.799937e-01 20 35713832 35713857 26 - 1.355 1.308 -0.164
ENSG00000131051 E037 1043.4099896 7.145445e-05 9.852059e-01 9.947678e-01 20 35714185 35714389 205 - 2.976 2.996 0.069
ENSG00000131051 E038 630.0584989 1.251119e-04 9.975027e-01 1.000000e+00 20 35716740 35716805 66 - 2.756 2.776 0.068
ENSG00000131051 E039 916.7999367 5.723530e-04 2.391312e-01 3.730858e-01 20 35721740 35721866 127 - 2.926 2.924 -0.005
ENSG00000131051 E040 480.1273210 2.665829e-04 8.914477e-02 1.738228e-01 20 35721867 35721873 7 - 2.649 2.636 -0.042
ENSG00000131051 E041 470.2724930 9.264175e-04 9.859078e-03 2.841799e-02 20 35721874 35721877 4 - 2.648 2.608 -0.135
ENSG00000131051 E042 744.7450716 1.958144e-03 6.687077e-01 7.756505e-01 20 35724570 35724675 106 - 2.833 2.838 0.017
ENSG00000131051 E043 510.7488859 2.108777e-03 1.503761e-01 2.621880e-01 20 35724676 35724722 47 - 2.679 2.653 -0.083
ENSG00000131051 E044 358.1764358 6.165944e-04 5.067887e-03 1.611548e-02 20 35725038 35725064 27 - 2.532 2.484 -0.161
ENSG00000131051 E045 514.6657036 1.433812e-04 9.926189e-05 5.183831e-04 20 35725065 35725123 59 - 2.690 2.640 -0.168
ENSG00000131051 E046 459.8239872 1.081003e-04 7.618690e-11 1.369911e-09 20 35725124 35725155 32 - 2.655 2.551 -0.349
ENSG00000131051 E047 401.4408744 1.170837e-04 9.287791e-13 2.292864e-11 20 35729312 35729321 10 - 2.603 2.475 -0.425
ENSG00000131051 E048 512.4129622 1.125449e-04 3.016746e-11 5.809244e-10 20 35729322 35729362 41 - 2.702 2.600 -0.337
ENSG00000131051 E049 356.5594219 1.663011e-04 2.251428e-07 2.137333e-06 20 35729363 35729365 3 - 2.542 2.448 -0.312
ENSG00000131051 E050 383.3641813 1.591602e-04 1.657136e-08 1.961754e-07 20 35729462 35729471 10 - 2.575 2.475 -0.332
ENSG00000131051 E051 529.4202006 1.826646e-04 1.959583e-05 1.218250e-04 20 35729472 35729527 56 - 2.703 2.645 -0.193
ENSG00000131051 E052 2.1004356 7.097819e-03 6.034014e-02 1.271891e-01 20 35729528 35729551 24 - 0.546 0.189 -2.202
ENSG00000131051 E053 44.4231194 1.161859e-03 3.363455e-05 1.975803e-04 20 35731360 35731915 556 - 1.530 1.782 0.857
ENSG00000131051 E054 13.4624138 1.290495e-03 9.470648e-01 9.707628e-01 20 35731916 35731940 25 - 1.120 1.133 0.045
ENSG00000131051 E055 346.1048985 2.102961e-03 1.084948e-02 3.080408e-02 20 35731941 35731945 5 - 2.519 2.457 -0.208
ENSG00000131051 E056 700.8495693 1.201497e-04 5.804606e-14 1.706230e-12 20 35731946 35732044 99 - 2.836 2.737 -0.330
ENSG00000131051 E057 437.3421607 1.182487e-04 7.146500e-13 1.795363e-11 20 35732045 35732059 15 - 2.638 2.516 -0.407
ENSG00000131051 E058 646.3618704 9.667226e-05 1.890167e-22 1.585154e-20 20 35732060 35732135 76 - 2.812 2.671 -0.468
ENSG00000131051 E059 5.5557779 5.653726e-03 6.089468e-03 1.884618e-02 20 35732136 35732806 671 - 0.633 1.013 1.497
ENSG00000131051 E060 20.6755804 8.843403e-04 1.111842e-06 9.140956e-06 20 35734186 35734257 72 - 1.398 0.937 -1.649
ENSG00000131051 E061 9.3601609 1.885087e-03 1.832752e-01 3.053142e-01 20 35734258 35734518 261 - 1.021 0.879 -0.532
ENSG00000131051 E062 9.5848534 7.988293e-03 4.435276e-01 5.851083e-01 20 35734519 35734766 248 - 1.013 0.937 -0.281
ENSG00000131051 E063 4.6061210 3.524650e-03 9.594186e-01 9.785343e-01 20 35734767 35734795 29 - 0.721 0.730 0.038
ENSG00000131051 E064 9.8911021 5.981299e-02 8.401028e-01 9.001519e-01 20 35734796 35734875 80 - 0.995 1.032 0.137
ENSG00000131051 E065 29.4555784 1.200832e-02 1.794593e-04 8.757413e-04 20 35734876 35735081 206 - 1.325 1.661 1.155
ENSG00000131051 E066 1.2660317 4.932651e-02 8.991530e-01 9.396545e-01 20 35736513 35736567 55 - 0.335 0.321 -0.087
ENSG00000131051 E067 1.8486971 8.430982e-03 6.424827e-01 7.552474e-01 20 35736568 35736641 74 - 0.406 0.503 0.497
ENSG00000131051 E068 525.2083918 1.243177e-04 9.246645e-20 5.707883e-18 20 35738968 35739017 50 - 2.724 2.577 -0.491
ENSG00000131051 E069 72.5403050 3.772840e-03 1.570563e-10 2.679802e-09 20 35739018 35739102 85 - 1.911 1.536 -1.271
ENSG00000131051 E070 94.7261010 3.114198e-04 8.893396e-11 1.582592e-09 20 35739103 35739392 290 - 2.010 1.741 -0.903
ENSG00000131051 E071 136.3602665 2.337320e-03 2.109761e-15 7.639295e-14 20 35739393 35739547 155 - 2.178 1.837 -1.145
ENSG00000131051 E072 198.4684237 1.089986e-02 2.956778e-16 1.200499e-14 20 35739548 35740098 551 - 2.361 1.856 -1.692
ENSG00000131051 E073 127.0402710 2.348350e-04 6.309962e-46 3.088898e-43 20 35740099 35740457 359 - 2.182 1.550 -2.134
ENSG00000131051 E074 78.4206375 3.273317e-04 4.203601e-34 9.641157e-32 20 35740458 35740524 67 - 1.983 1.267 -2.441
ENSG00000131051 E075 140.5548247 1.460875e-03 8.948638e-11 1.591974e-09 20 35740525 35740597 73 - 2.175 1.933 -0.813
ENSG00000131051 E076 44.9495769 4.817105e-04 2.826282e-22 2.317881e-20 20 35740598 35740823 226 - 1.750 0.989 -2.657
ENSG00000131051 E077 446.0078769 4.610078e-04 3.573906e-15 1.256152e-13 20 35740824 35740887 64 - 2.654 2.501 -0.512
ENSG00000131051 E078 1.8297030 1.264496e-01 1.865427e-05 1.165374e-04 20 35740952 35740989 38 - 0.000 0.814 14.049
ENSG00000131051 E079 4.7822150 3.326941e-03 2.072724e-09 2.893460e-08 20 35741462 35741487 26 - 0.294 1.133 3.699
ENSG00000131051 E080 6.0753377 2.766123e-03 7.891832e-13 1.971106e-11 20 35741488 35741626 139 - 0.294 1.241 4.083
ENSG00000131051 E081 569.2307587 1.557480e-03 4.606265e-05 2.618348e-04 20 35741941 35742113 173 - 2.743 2.656 -0.290
ENSG00000131051 E082 285.6367933 2.390621e-03 2.387786e-02 5.955303e-02 20 35742114 35742244 131 - 2.437 2.378 -0.196
ENSG00000131051 E083 20.1245144 7.558488e-03 1.456728e-01 2.557648e-01 20 35742245 35742312 68 - 1.321 1.198 -0.432