ENSG00000130985

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000335972 ENSG00000130985 HEK293_OSMI2_2hA HEK293_TMG_2hB UBA1 protein_coding protein_coding 403.3792 641.879 241.0368 26.70109 1.717377 -1.413011 117.08061 161.77842 87.28626 19.734522 2.681760 -0.8901166 0.30195417 0.2503000 0.3621000 0.11180000 9.719472e-03 6.509931e-27 FALSE TRUE
ENST00000377351 ENSG00000130985 HEK293_OSMI2_2hA HEK293_TMG_2hB UBA1 protein_coding protein_coding 403.3792 641.879 241.0368 26.70109 1.717377 -1.413011 190.56409 275.94703 111.75184 31.060056 3.437623 -1.3040159 0.47792500 0.4277667 0.4636333 0.03586667 7.264167e-01 6.509931e-27 FALSE TRUE
MSTRG.34178.2 ENSG00000130985 HEK293_OSMI2_2hA HEK293_TMG_2hB UBA1 protein_coding   403.3792 641.879 241.0368 26.70109 1.717377 -1.413011 20.60766 25.79877 16.71706 3.284836 1.589578 -0.6256771 0.05605000 0.0399000 0.0694000 0.02950000 1.254575e-02 6.509931e-27 FALSE TRUE
MSTRG.34178.22 ENSG00000130985 HEK293_OSMI2_2hA HEK293_TMG_2hB UBA1 protein_coding   403.3792 641.879 241.0368 26.70109 1.717377 -1.413011 43.15791 147.04933 0.00000 31.610604 0.000000 -13.8441107 0.07519167 0.2335667 0.0000000 -0.23356667 6.509931e-27 6.509931e-27 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000130985 E001 1.8716089 1.999291e-02 7.104163e-01 8.075982e-01 X 47190748 47190794 47 + 0.328 0.400 0.419
ENSG00000130985 E002 2.0199020 7.794180e-03 5.913844e-01 7.141646e-01 X 47190795 47190798 4 + 0.328 0.430 0.584
ENSG00000130985 E003 9.6441439 1.805789e-03 2.685087e-01 4.069810e-01 X 47190799 47190810 12 + 1.048 0.920 -0.473
ENSG00000130985 E004 112.1372368 8.164034e-03 9.879416e-07 8.205286e-06 X 47190811 47190860 50 + 2.166 1.891 -0.923
ENSG00000130985 E005 977.8444085 3.478853e-03 1.408314e-02 3.841102e-02 X 47190861 47190950 90 + 2.962 2.888 -0.245
ENSG00000130985 E006 4.6251201 6.154354e-02 5.496135e-04 2.345421e-03 X 47191399 47191422 24 + 1.048 0.463 -2.417
ENSG00000130985 E007 8.4010161 9.670664e-02 6.189981e-04 2.603106e-03 X 47191423 47191567 145 + 1.294 0.663 -2.375
ENSG00000130985 E008 14.6713970 5.311005e-03 2.207439e-04 1.052613e-03 X 47191568 47191734 167 + 1.362 1.009 -1.258
ENSG00000130985 E009 3.9959394 1.625783e-01 3.587438e-01 5.031166e-01 X 47193809 47193810 2 + 0.742 0.589 -0.646
ENSG00000130985 E010 5.1406566 5.859925e-02 3.742658e-01 5.186874e-01 X 47193811 47193811 1 + 0.822 0.680 -0.577
ENSG00000130985 E011 6.5788252 6.136372e-03 5.909241e-01 7.137452e-01 X 47193812 47193813 2 + 0.858 0.784 -0.291
ENSG00000130985 E012 16.8788751 1.070730e-03 6.705221e-02 1.384657e-01 X 47193814 47193828 15 + 1.293 1.127 -0.588
ENSG00000130985 E013 30.2500997 1.242587e-03 3.007082e-04 1.382490e-03 X 47193829 47193836 8 + 1.589 1.340 -0.858
ENSG00000130985 E014 937.0728788 5.231845e-03 3.207837e-05 1.894433e-04 X 47193837 47194024 188 + 3.002 2.849 -0.509
ENSG00000130985 E015 63.4121818 6.450017e-04 4.614675e-23 4.115990e-21 X 47196356 47196469 114 + 2.032 1.573 -1.550
ENSG00000130985 E016 57.9509467 2.600953e-03 9.629027e-08 9.804839e-07 X 47196947 47197024 78 + 1.894 1.605 -0.977
ENSG00000130985 E017 180.6935424 1.023353e-02 5.144124e-15 1.765789e-13 X 47197199 47198017 819 + 2.473 2.033 -1.469
ENSG00000130985 E018 58.9647997 7.701933e-03 7.002777e-08 7.325539e-07 X 47198018 47198166 149 + 1.930 1.589 -1.153
ENSG00000130985 E019 64.1144638 3.105115e-03 2.993563e-09 4.061603e-08 X 47198167 47198308 142 + 1.950 1.634 -1.065
ENSG00000130985 E020 69.0706693 3.790889e-04 5.376777e-08 5.756835e-07 X 47198309 47198355 47 + 1.941 1.691 -0.845
ENSG00000130985 E021 90.9108580 1.409709e-03 1.367023e-10 2.358423e-09 X 47198527 47198802 276 + 2.075 1.799 -0.931
ENSG00000130985 E022 2874.6666832 3.184851e-03 1.758050e-07 1.703617e-06 X 47198803 47198919 117 + 3.481 3.338 -0.474
ENSG00000130985 E023 2544.6134885 2.360041e-03 5.422111e-09 7.028894e-08 X 47199048 47199106 59 + 3.426 3.286 -0.467
ENSG00000130985 E024 3443.3527307 2.788997e-03 1.215996e-08 1.476615e-07 X 47199209 47199377 169 + 3.562 3.416 -0.483
ENSG00000130985 E025 2735.5858428 2.523881e-03 1.772452e-08 2.086922e-07 X 47199480 47199614 135 + 3.457 3.318 -0.464
ENSG00000130985 E026 0.9244034 1.426900e-02 8.006564e-01 8.729678e-01 X 47200500 47200517 18 + 0.194 0.243 0.413
ENSG00000130985 E027 0.7761102 3.893639e-02 1.000000e+00 1.000000e+00 X 47200518 47200544 27 + 0.194 0.195 0.005
ENSG00000130985 E028 1895.8247640 4.024642e-03 3.033949e-04 1.393219e-03 X 47200894 47201000 107 + 3.278 3.166 -0.372
ENSG00000130985 E029 2268.3236914 1.945344e-03 2.184697e-07 2.078880e-06 X 47201276 47201366 91 + 3.359 3.243 -0.385
ENSG00000130985 E030 3506.9214695 1.705656e-03 5.109454e-07 4.511842e-06 X 47201478 47201610 133 + 3.537 3.436 -0.338
ENSG00000130985 E031 6.3033422 1.177689e-02 9.990799e-01 1.000000e+00 X 47201611 47201611 1 + 0.784 0.784 0.000
ENSG00000130985 E032 3348.0768632 1.353206e-03 6.755981e-06 4.670487e-05 X 47202156 47202253 98 + 3.503 3.420 -0.274
ENSG00000130985 E033 3731.9759554 1.085723e-03 5.801930e-03 1.809165e-02 X 47202358 47202504 147 + 3.521 3.477 -0.147
ENSG00000130985 E034 1442.0637084 5.737065e-04 9.842540e-04 3.905332e-03 X 47202638 47202640 3 + 3.112 3.061 -0.170
ENSG00000130985 E035 2340.3547877 9.996745e-04 7.290500e-01 8.213486e-01 X 47202641 47202692 52 + 3.287 3.283 -0.012
ENSG00000130985 E036 3360.0211308 8.534610e-04 9.077373e-01 9.454459e-01 X 47202693 47202814 122 + 3.440 3.441 0.003
ENSG00000130985 E037 3391.8019872 6.687466e-04 3.202838e-02 7.591243e-02 X 47202943 47203047 105 + 3.467 3.439 -0.093
ENSG00000130985 E038 3088.5322492 4.696554e-04 5.553445e-03 1.742812e-02 X 47203134 47203214 81 + 3.430 3.396 -0.110
ENSG00000130985 E039 4034.1431843 4.968532e-04 2.206155e-01 3.511619e-01 X 47203541 47203696 156 + 3.530 3.517 -0.042
ENSG00000130985 E040 3243.0501049 2.767238e-04 4.919729e-01 6.291935e-01 X 47205948 47206077 130 + 3.418 3.427 0.030
ENSG00000130985 E041 2487.7079713 1.064520e-04 3.486844e-01 4.929164e-01 X 47206078 47206113 36 + 3.315 3.307 -0.029
ENSG00000130985 E042 5246.6256219 2.399666e-04 4.532749e-01 5.940128e-01 X 47206248 47206444 197 + 3.638 3.633 -0.017
ENSG00000130985 E043 20.0046521 9.451471e-03 6.868581e-02 1.411912e-01 X 47206445 47206664 220 + 1.372 1.203 -0.592
ENSG00000130985 E044 57.1706108 4.304257e-04 3.529772e-14 1.070613e-12 X 47208562 47209622 1061 + 1.936 1.564 -1.256
ENSG00000130985 E045 3065.9910667 5.232903e-05 5.116307e-03 1.624655e-02 X 47209623 47209687 65 + 3.381 3.404 0.077
ENSG00000130985 E046 4335.7581517 3.205219e-05 1.579752e-12 3.745673e-11 X 47209928 47210123 196 + 3.511 3.560 0.162
ENSG00000130985 E047 3094.6515841 6.308027e-04 4.118518e-03 1.347427e-02 X 47210842 47210916 75 + 3.371 3.414 0.143
ENSG00000130985 E048 5406.2845542 5.249095e-05 2.090405e-05 1.290927e-04 X 47211036 47211225 190 + 3.624 3.652 0.094
ENSG00000130985 E049 4032.6391924 1.827217e-04 8.126804e-10 1.225210e-08 X 47212424 47212512 89 + 3.473 3.531 0.195
ENSG00000130985 E050 4436.4655413 3.403666e-04 6.064129e-09 7.795556e-08 X 47212771 47212863 93 + 3.509 3.575 0.218
ENSG00000130985 E051 6771.5816246 1.708159e-03 1.519351e-06 1.213323e-05 X 47212990 47213181 192 + 3.666 3.766 0.332
ENSG00000130985 E052 4.5653269 3.790644e-03 2.815319e-01 4.214303e-01 X 47213182 47213265 84 + 0.784 0.623 -0.669
ENSG00000130985 E053 5401.2602937 3.191269e-03 2.246925e-05 1.377004e-04 X 47214327 47214428 102 + 3.550 3.671 0.401
ENSG00000130985 E054 2746.4634536 3.383168e-03 2.360326e-04 1.116803e-03 X 47214537 47214540 4 + 3.263 3.376 0.374
ENSG00000130985 E055 4872.0456672 4.037374e-03 1.139281e-06 9.346670e-06 X 47214541 47214637 97 + 3.476 3.632 0.518
ENSG00000130985 E056 5700.0989680 5.236404e-03 3.658297e-09 4.883217e-08 X 47214794 47215252 459 + 3.497 3.709 0.705