ENSG00000130714

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000341012 ENSG00000130714 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT1 protein_coding protein_coding 32.91522 39.74771 27.03165 1.319439 1.941149 -0.5560517 6.509724 8.715737 5.447584 1.2101685 1.1839749 -0.6770145 0.19626250 0.21856667 0.19936667 -0.019200000 8.820918e-01 5.869168e-35 FALSE TRUE
ENST00000372220 ENSG00000130714 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT1 protein_coding protein_coding 32.91522 39.74771 27.03165 1.319439 1.941149 -0.5560517 2.383962 8.150068 0.000000 1.0007661 0.0000000 -9.6724374 0.06025417 0.20450000 0.00000000 -0.204500000 5.869168e-35 5.869168e-35 FALSE TRUE
ENST00000402686 ENSG00000130714 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT1 protein_coding protein_coding 32.91522 39.74771 27.03165 1.319439 1.941149 -0.5560517 5.145663 6.505276 2.936282 0.2245986 1.4770690 -1.1449307 0.15622083 0.16430000 0.11216667 -0.052133333 7.856933e-01 5.869168e-35 FALSE TRUE
MSTRG.33548.7 ENSG00000130714 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT1 protein_coding   32.91522 39.74771 27.03165 1.319439 1.941149 -0.5560517 1.983175 1.938826 1.519536 0.3491511 0.3118234 -0.3495117 0.06315833 0.04876667 0.05653333 0.007766667 8.700321e-01 5.869168e-35 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000130714 E001 0.2998086 0.0295292046 7.343129e-01   9 131502789 131502894 106 + 0.149 0.100 -0.654
ENSG00000130714 E002 0.0000000       9 131502895 131502897 3 +      
ENSG00000130714 E003 0.4815130 0.0206366056 8.619217e-01 9.149813e-01 9 131502898 131502905 8 + 0.149 0.182 0.348
ENSG00000130714 E004 0.9297165 0.0158737319 1.714702e-01 2.901154e-01 9 131502906 131502917 12 + 0.420 0.182 -1.652
ENSG00000130714 E005 1.1114209 0.1013891984 3.795133e-01 5.237796e-01 9 131502918 131502919 2 + 0.421 0.250 -1.073
ENSG00000130714 E006 1.1114209 0.1013891984 3.795133e-01 5.237796e-01 9 131502920 131502921 2 + 0.421 0.250 -1.073
ENSG00000130714 E007 3.3788216 0.2380678876 4.968593e-01 6.334432e-01 9 131502922 131502929 8 + 0.739 0.554 -0.794
ENSG00000130714 E008 5.2429694 0.1931784011 7.484197e-01 8.356714e-01 9 131502930 131502935 6 + 0.826 0.753 -0.290
ENSG00000130714 E009 26.2344996 0.0007724421 1.525669e-01 2.651683e-01 9 131502936 131502943 8 + 1.470 1.378 -0.320
ENSG00000130714 E010 26.5279655 0.0007427176 1.446350e-01 2.543339e-01 9 131502944 131502944 1 + 1.476 1.382 -0.325
ENSG00000130714 E011 27.4888875 0.0007180986 2.554601e-01 3.923450e-01 9 131502945 131502947 3 + 1.476 1.405 -0.246
ENSG00000130714 E012 29.0648549 0.0007095385 3.010692e-01 4.428381e-01 9 131502948 131502949 2 + 1.494 1.431 -0.216
ENSG00000130714 E013 33.5815484 0.0006198871 8.080095e-02 1.607930e-01 9 131502950 131502954 5 + 1.576 1.475 -0.348
ENSG00000130714 E014 48.6126790 0.0026173700 3.836303e-02 8.803432e-02 9 131502955 131502966 12 + 1.736 1.625 -0.375
ENSG00000130714 E015 56.5465589 0.0026725839 2.387038e-02 5.953948e-02 9 131502967 131502970 4 + 1.802 1.688 -0.386
ENSG00000130714 E016 58.2332543 0.0042043419 6.303363e-02 1.317628e-01 9 131502971 131502974 4 + 1.805 1.707 -0.329
ENSG00000130714 E017 59.6964030 0.0053021385 8.083813e-02 1.608518e-01 9 131502975 131502977 3 + 1.813 1.719 -0.316
ENSG00000130714 E018 61.8826629 0.0057503940 2.215830e-02 5.600458e-02 9 131502978 131502983 6 + 1.847 1.722 -0.422
ENSG00000130714 E019 66.0867711 0.0070057078 3.805345e-02 8.745101e-02 9 131502984 131502994 11 + 1.869 1.755 -0.387
ENSG00000130714 E020 66.5575732 0.0048004355 3.895631e-02 8.910756e-02 9 131502995 131502995 1 + 1.867 1.761 -0.357
ENSG00000130714 E021 71.8571071 0.0065125946 6.691822e-02 1.382523e-01 9 131502996 131503005 10 + 1.895 1.798 -0.325
ENSG00000130714 E022 70.6413141 0.0069766891 6.119009e-02 1.286287e-01 9 131503006 131503009 4 + 1.890 1.789 -0.340
ENSG00000130714 E023 72.2770868 0.0066061097 2.364680e-02 5.908408e-02 9 131503010 131503011 2 + 1.913 1.791 -0.410
ENSG00000130714 E024 98.1799358 0.0069222550 5.208132e-02 1.128610e-01 9 131503012 131503063 52 + 2.030 1.934 -0.321
ENSG00000130714 E025 79.1996338 0.0064165393 5.184395e-02 1.124457e-01 9 131503064 131503073 10 + 1.942 1.841 -0.339
ENSG00000130714 E026 7.2457508 0.0669241896 2.395905e-01 3.736362e-01 9 131503074 131503075 2 + 1.017 0.824 -0.732
ENSG00000130714 E027 12.7460928 0.0372442820 2.524209e-01 3.887741e-01 9 131503076 131503190 115 + 1.207 1.058 -0.536
ENSG00000130714 E028 8.4059559 0.0064761649 2.028354e-01 3.297766e-01 9 131503191 131503245 55 + 1.033 0.890 -0.532
ENSG00000130714 E029 5.4865132 0.0029916592 1.403610e-01 2.485300e-01 9 131503246 131503250 5 + 0.899 0.712 -0.737
ENSG00000130714 E030 5.7518664 0.0028992408 6.544065e-02 1.357759e-01 9 131503251 131503255 5 + 0.942 0.712 -0.898
ENSG00000130714 E031 7.0857516 0.0024239782 2.516674e-02 6.222158e-02 9 131503256 131503283 28 + 1.033 0.774 -0.987
ENSG00000130714 E032 7.4814271 0.0022104610 3.381845e-02 7.939334e-02 9 131503284 131503313 30 + 1.049 0.810 -0.902
ENSG00000130714 E033 1.6553619 0.0103356350 5.771827e-01 7.024730e-01 9 131503314 131503315 2 + 0.347 0.450 0.571
ENSG00000130714 E034 3.6943834 0.0042186827 2.865698e-01 4.269844e-01 9 131503316 131503365 50 + 0.739 0.586 -0.650
ENSG00000130714 E035 10.5189675 0.0015666765 3.205222e-05 1.893242e-04 9 131503438 131504188 751 + 1.268 0.859 -1.493
ENSG00000130714 E036 38.4012720 0.0005727684 6.018571e-03 1.866121e-02 9 131504189 131504216 28 + 1.665 1.514 -0.514
ENSG00000130714 E037 32.5710448 0.0006442665 8.581018e-03 2.524063e-02 9 131504217 131504218 2 + 1.599 1.443 -0.534
ENSG00000130714 E038 69.3300033 0.0025902301 2.418180e-03 8.516451e-03 9 131504219 131504340 122 + 1.912 1.771 -0.478
ENSG00000130714 E039 10.8303091 0.0016983440 6.534356e-02 1.356113e-01 9 131504341 131504453 113 + 1.160 0.981 -0.651
ENSG00000130714 E040 15.8361485 0.0039293485 2.965767e-01 4.378073e-01 9 131504454 131504649 196 + 1.258 1.170 -0.315
ENSG00000130714 E041 15.5364154 0.0326285641 6.267441e-04 2.631125e-03 9 131504998 131506113 1116 + 1.413 1.017 -1.404
ENSG00000130714 E042 106.0167355 0.0023959557 4.620595e-03 1.487733e-02 9 131506114 131506182 69 + 2.074 1.962 -0.376
ENSG00000130714 E043 91.1457968 0.0012714428 1.162426e-01 2.146062e-01 9 131506183 131506220 38 + 1.973 1.914 -0.198
ENSG00000130714 E044 5.5348740 0.0689669163 2.042175e-01 3.314491e-01 9 131506221 131506402 182 + 0.900 0.701 -0.788
ENSG00000130714 E045 80.8004552 0.0045959296 1.445191e-01 2.541725e-01 9 131506403 131506411 9 + 1.927 1.860 -0.228
ENSG00000130714 E046 106.6735565 0.0010542686 9.743656e-02 1.865645e-01 9 131506412 131506453 42 + 2.041 1.984 -0.192
ENSG00000130714 E047 18.0802867 0.0089703529 3.526866e-07 3.215526e-06 9 131506454 131507350 897 + 1.505 1.054 -1.585
ENSG00000130714 E048 2.8784055 0.1878980566 3.484826e-01 4.927157e-01 9 131507351 131507367 17 + 0.705 0.486 -0.983
ENSG00000130714 E049 62.9863328 0.0009170197 4.610660e-01 6.010540e-01 9 131507368 131507376 9 + 1.796 1.767 -0.099
ENSG00000130714 E050 147.5062108 0.0004788355 1.846855e-01 3.070803e-01 9 131507377 131507514 138 + 2.168 2.133 -0.120
ENSG00000130714 E051 16.1183310 0.0142291881 1.157165e-07 1.162280e-06 9 131507515 131508174 660 + 1.477 0.946 -1.887
ENSG00000130714 E052 18.7377562 0.0012828076 1.372479e-12 3.287131e-11 9 131508175 131508910 736 + 1.552 0.993 -1.973
ENSG00000130714 E053 92.0574476 0.0003064099 5.169516e-02 1.121743e-01 9 131508911 131508940 30 + 1.988 1.920 -0.229
ENSG00000130714 E054 85.4042564 0.0004036383 6.893208e-02 1.416006e-01 9 131508941 131508964 24 + 1.954 1.887 -0.223
ENSG00000130714 E055 120.4552196 0.0067357001 8.177691e-01 8.847890e-01 9 131508965 131509022 58 + 2.060 2.057 -0.007
ENSG00000130714 E056 2.9698854 0.1273072814 8.836880e-03 2.587392e-02 9 131509521 131509545 25 + 0.853 0.310 -2.556
ENSG00000130714 E057 9.7162768 0.0412322213 1.169459e-03 4.537272e-03 9 131509546 131509742 197 + 1.238 0.796 -1.634
ENSG00000130714 E058 119.2405856 0.0058889805 7.405926e-01 8.299647e-01 9 131509743 131509808 66 + 2.058 2.051 -0.024
ENSG00000130714 E059 5.7341640 0.0688117071 4.341530e-04 1.906029e-03 9 131509809 131509902 94 + 1.093 0.494 -2.426
ENSG00000130714 E060 155.7779523 0.0025702286 5.223357e-01 6.561737e-01 9 131509903 131509996 94 + 2.180 2.163 -0.058
ENSG00000130714 E061 40.3911872 0.0005492460 4.627705e-03 1.489626e-02 9 131509997 131510062 66 + 1.684 1.531 -0.519
ENSG00000130714 E062 13.2459673 0.0013325605 1.655855e-03 6.140443e-03 9 131510063 131510141 79 + 1.296 1.015 -1.005
ENSG00000130714 E063 12.6086987 0.0014031105 1.805690e-03 6.617196e-03 9 131510142 131510182 41 + 1.277 0.993 -1.023
ENSG00000130714 E064 21.2571978 0.0008703001 3.060538e-06 2.285595e-05 9 131510183 131510259 77 + 1.516 1.177 -1.181
ENSG00000130714 E065 178.5050638 0.0002465138 1.343354e-01 2.401842e-01 9 131510260 131510356 97 + 2.253 2.217 -0.120
ENSG00000130714 E066 150.7465250 0.0014353728 1.380944e-01 2.454273e-01 9 131510357 131510386 30 + 2.186 2.141 -0.150
ENSG00000130714 E067 131.5335636 0.0076792953 1.131592e-01 2.101424e-01 9 131510387 131510415 29 + 2.149 2.074 -0.251
ENSG00000130714 E068 2.4054530 0.0074231354 1.658845e-02 4.403419e-02 9 131510500 131511336 837 + 0.739 0.361 -1.791
ENSG00000130714 E069 195.5308949 0.0017114484 2.361271e-02 5.901293e-02 9 131511337 131511467 131 + 2.314 2.248 -0.222
ENSG00000130714 E070 10.3175353 0.0231604001 8.920610e-02 1.739202e-01 9 131511468 131511472 5 + 1.148 0.946 -0.737
ENSG00000130714 E071 6.6641576 0.0024720053 2.259200e-05 1.383363e-04 9 131511473 131511574 102 + 1.122 0.615 -1.973
ENSG00000130714 E072 6.9193632 0.0126797988 3.417992e-03 1.149098e-02 9 131511575 131511742 168 + 1.079 0.713 -1.403
ENSG00000130714 E073 9.5057937 0.0018206205 3.447688e-07 3.150464e-06 9 131511743 131511967 225 + 1.268 0.734 -1.989
ENSG00000130714 E074 3.7110503 0.0480535974 2.173992e-05 1.336284e-04 9 131511968 131512040 73 + 0.980 0.252 -3.445
ENSG00000130714 E075 161.8904585 0.0002734832 3.210903e-01 4.642948e-01 9 131512041 131512136 96 + 2.204 2.181 -0.078
ENSG00000130714 E076 146.3393064 0.0044643677 9.613410e-01 9.796519e-01 9 131513239 131513331 93 + 2.144 2.150 0.020
ENSG00000130714 E077 190.3135795 0.0027381121 5.175551e-01 6.519146e-01 9 131515426 131515522 97 + 2.270 2.255 -0.051
ENSG00000130714 E078 0.5922303 0.0179888287 1.439625e-01 2.534072e-01 9 131516608 131516720 113 + 0.347 0.100 -2.237
ENSG00000130714 E079 1.5606435 0.0087232101 8.258215e-03 2.443682e-02 9 131516721 131517219 499 + 0.630 0.182 -2.651
ENSG00000130714 E080 0.0000000       9 131517993 131517999 7 +      
ENSG00000130714 E081 0.3030308 0.3800980709 1.733855e-01   9 131518000 131518056 57 + 0.260 0.000 -11.355
ENSG00000130714 E082 0.7469680 0.0170883892 4.196273e-03 1.369436e-02 9 131518057 131518291 235 + 0.483 0.000 -14.172
ENSG00000130714 E083 0.1515154 0.0428772639 3.139305e-01   9 131518292 131518323 32 + 0.149 0.000 -11.499
ENSG00000130714 E084 0.1515154 0.0428772639 3.139305e-01   9 131518324 131518353 30 + 0.149 0.000 -11.499
ENSG00000130714 E085 1.0382412 0.0136343389 7.913920e-01 8.665791e-01 9 131518431 131518444 14 + 0.259 0.309 0.350
ENSG00000130714 E086 224.9891418 0.0039822021 6.791518e-01 7.834472e-01 9 131518445 131518537 93 + 2.335 2.329 -0.023
ENSG00000130714 E087 9.6917265 0.0290148614 4.529822e-01 5.937899e-01 9 131518698 131518727 30 + 1.049 0.964 -0.314
ENSG00000130714 E088 11.6834324 0.0031054835 8.378875e-02 1.654803e-01 9 131518728 131518767 40 + 1.172 1.005 -0.606
ENSG00000130714 E089 15.5771739 0.0374680912 3.925273e-01 5.364943e-01 9 131518768 131518836 69 + 1.259 1.152 -0.377
ENSG00000130714 E090 268.2552534 0.0005779329 9.982238e-01 1.000000e+00 9 131518837 131518957 121 + 2.402 2.409 0.021
ENSG00000130714 E091 4.5027535 0.0038493850 1.084005e-05 7.144746e-05 9 131519084 131519388 305 + 1.016 0.408 -2.589
ENSG00000130714 E092 126.8747076 0.0035042877 9.657333e-01 9.824640e-01 9 131519389 131519393 5 + 2.082 2.087 0.017
ENSG00000130714 E093 207.2810923 0.0008954098 3.916307e-02 8.948110e-02 9 131519394 131519486 93 + 2.251 2.318 0.221
ENSG00000130714 E094 198.1154512 0.0008279159 1.525075e-03 5.717695e-03 9 131520080 131520193 114 + 2.208 2.308 0.335
ENSG00000130714 E095 11.8296820 0.0015035791 2.433968e-04 1.147511e-03 9 131520194 131520769 576 + 1.277 0.931 -1.252
ENSG00000130714 E096 5.7658712 0.1974363778 8.324725e-01 8.950229e-01 9 131521105 131521345 241 + 0.852 0.799 -0.205
ENSG00000130714 E097 220.6542472 0.0002367716 4.581130e-06 3.290047e-05 9 131521346 131521472 127 + 2.236 2.361 0.417
ENSG00000130714 E098 3.1449298 0.0065834263 1.456760e-01 2.557680e-01 9 131521980 131522046 67 + 0.739 0.523 -0.942
ENSG00000130714 E099 247.4599709 0.0002068472 7.757923e-07 6.599530e-06 9 131522047 131522201 155 + 2.284 2.411 0.423
ENSG00000130714 E100 137.7499732 0.0002569903 4.558125e-04 1.989731e-03 9 131522202 131522224 23 + 2.033 2.153 0.402
ENSG00000130714 E101 16.6884098 0.0034255223 4.279630e-02 9.617707e-02 9 131522225 131522533 309 + 1.330 1.161 -0.595
ENSG00000130714 E102 104.9227474 0.0003101332 1.067953e-02 3.040493e-02 9 131522932 131522938 7 + 1.929 2.030 0.336
ENSG00000130714 E103 368.9403818 0.0001669213 5.040615e-07 4.456248e-06 9 131522939 131523170 232 + 2.471 2.577 0.353
ENSG00000130714 E104 288.1844707 0.0001900625 4.042831e-10 6.443192e-09 9 131523171 131523317 147 + 2.334 2.483 0.496
ENSG00000130714 E105 172.2864670 0.0004886003 3.524567e-11 6.707370e-10 9 131523318 131523346 29 + 2.066 2.277 0.707
ENSG00000130714 E106 156.7230112 0.0014956986 5.298995e-07 4.663563e-06 9 131523347 131523352 6 + 2.044 2.230 0.623
ENSG00000130714 E107 281.7424727 0.0031349040 6.035635e-12 1.301871e-10 9 131523353 131523462 110 + 2.248 2.501 0.846
ENSG00000130714 E108 304.4300330 0.0107245655 4.755912e-09 6.232329e-08 9 131523463 131523806 344 + 2.220 2.552 1.107
ENSG00000130714 E109 0.3666179 0.0298708409 7.366405e-01 8.270775e-01 9 131528273 131528453 181 + 0.149 0.100 -0.647