ENSG00000130702

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000252999 ENSG00000130702 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA5 protein_coding protein_coding 13.96299 16.41437 10.39636 1.893674 0.5320714 -0.6583726 3.8194562 3.6528385 3.2601623 0.60871978 0.16718313 -0.1635998 0.28600833 0.21990000 0.31373333 0.09383333 2.640406e-02 8.383652e-08 FALSE TRUE
ENST00000370691 ENSG00000130702 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA5 protein_coding retained_intron 13.96299 16.41437 10.39636 1.893674 0.5320714 -0.6583726 1.7453861 3.3440938 0.9626596 0.53470136 0.19290281 -1.7859161 0.11940833 0.21020000 0.09160000 -0.11860000 7.218544e-02 8.383652e-08 TRUE TRUE
ENST00000464134 ENSG00000130702 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA5 protein_coding retained_intron 13.96299 16.41437 10.39636 1.893674 0.5320714 -0.6583726 0.9917597 0.3343382 1.2799363 0.09647666 0.23894902 1.9054015 0.07529167 0.01960000 0.12216667 0.10256667 1.827779e-06 8.383652e-08 FALSE FALSE
ENST00000471042 ENSG00000130702 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA5 protein_coding retained_intron 13.96299 16.41437 10.39636 1.893674 0.5320714 -0.6583726 1.0880488 0.2935541 0.8981477 0.04924596 0.18099123 1.5809735 0.08055417 0.01766667 0.08573333 0.06806667 1.237896e-05 8.383652e-08   FALSE
ENST00000491036 ENSG00000130702 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA5 protein_coding retained_intron 13.96299 16.41437 10.39636 1.893674 0.5320714 -0.6583726 0.9218238 0.5747375 0.9845330 0.16050146 0.07076934 0.7662302 0.06764167 0.03370000 0.09500000 0.06130000 1.505311e-03 8.383652e-08   FALSE
ENST00000495695 ENSG00000130702 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA5 protein_coding retained_intron 13.96299 16.41437 10.39636 1.893674 0.5320714 -0.6583726 3.5872846 6.7468928 1.7654214 0.92739822 0.10777498 -1.9281984 0.23958750 0.41053333 0.17120000 -0.23933333 8.383652e-08 8.383652e-08 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000130702 E001 6.0817622 0.0026900827 4.489497e-01 5.901565e-01 20 62307955 62308446 492 - 0.892 0.799 -0.363
ENSG00000130702 E002 2.5453231 0.0059762069 6.149868e-01 7.333628e-01 20 62308856 62309058 203 - 0.477 0.562 0.403
ENSG00000130702 E003 1.1791475 0.0136354560 8.673241e-01 9.186778e-01 20 62309059 62309064 6 - 0.343 0.314 -0.181
ENSG00000130702 E004 15.7237349 0.0017904502 3.647157e-03 1.214695e-02 20 62309065 62309144 80 - 1.009 1.285 0.988
ENSG00000130702 E005 53.4961088 0.0080009534 3.144748e-06 2.341744e-05 20 62309145 62309280 136 - 1.475 1.804 1.121
ENSG00000130702 E006 90.5049685 0.0085381041 1.497332e-07 1.470071e-06 20 62309281 62309475 195 - 1.698 2.029 1.116
ENSG00000130702 E007 89.3535782 0.0016951880 3.791845e-09 5.049582e-08 20 62309716 62309835 120 - 1.737 2.009 0.915
ENSG00000130702 E008 102.2538785 0.0003128070 9.517115e-11 1.685036e-09 20 62309988 62310081 94 - 1.808 2.061 0.852
ENSG00000130702 E009 121.4306824 0.0006281629 1.887305e-10 3.175651e-09 20 62310178 62310311 134 - 1.896 2.132 0.792
ENSG00000130702 E010 11.0964255 0.0015318867 3.492845e-01 4.935034e-01 20 62310312 62310412 101 - 1.114 1.022 -0.333
ENSG00000130702 E011 70.2703305 0.0003972154 3.016805e-09 4.090420e-08 20 62310419 62310572 154 - 1.626 1.907 0.951
ENSG00000130702 E012 81.8325810 0.0003642175 4.891933e-08 5.285213e-07 20 62310665 62310829 165 - 1.721 1.959 0.803
ENSG00000130702 E013 99.1008553 0.0088331028 5.107545e-03 1.622243e-02 20 62310902 62311094 193 - 1.854 2.031 0.597
ENSG00000130702 E014 73.3281220 0.0191097756 4.691552e-02 1.036744e-01 20 62311162 62311256 95 - 1.731 1.904 0.584
ENSG00000130702 E015 47.1839778 0.0150779461 2.002923e-02 5.155119e-02 20 62311257 62311307 51 - 1.519 1.721 0.689
ENSG00000130702 E016 67.7636333 0.0028366875 9.223634e-07 7.713383e-06 20 62311401 62311536 136 - 1.626 1.892 0.900
ENSG00000130702 E017 76.9165742 0.0019185666 3.502232e-04 1.580974e-03 20 62311614 62311784 171 - 1.750 1.923 0.582
ENSG00000130702 E018 36.6884759 0.0006529565 6.132632e-03 1.895716e-02 20 62311920 62311929 10 - 1.432 1.604 0.591
ENSG00000130702 E019 65.7256060 0.0037209128 1.552490e-03 5.806231e-03 20 62311930 62312050 121 - 1.680 1.856 0.597
ENSG00000130702 E020 1.1941248 0.3953666257 2.548901e-01 3.916703e-01 20 62312051 62312146 96 - 0.479 0.192 -1.860
ENSG00000130702 E021 71.5165956 0.0003972590 2.555218e-03 8.927897e-03 20 62312173 62312316 144 - 1.741 1.877 0.462
ENSG00000130702 E022 64.8299718 0.0004194549 1.075243e-02 3.057389e-02 20 62312400 62312532 133 - 1.708 1.829 0.410
ENSG00000130702 E023 69.4147289 0.0051616252 2.313528e-02 5.802875e-02 20 62312632 62312780 149 - 1.734 1.866 0.444
ENSG00000130702 E024 4.6050623 0.0035749526 4.470695e-04 1.955711e-03 20 62312781 62312887 107 - 0.973 0.494 -1.989
ENSG00000130702 E025 56.7349971 0.0129290220 2.930841e-01 4.341166e-01 20 62312888 62313010 123 - 1.684 1.763 0.269
ENSG00000130702 E026 61.0190634 0.0006815889 7.151553e-02 1.458574e-01 20 62313088 62313179 92 - 1.704 1.794 0.302
ENSG00000130702 E027 56.8918455 0.0004617627 3.247730e-02 7.676453e-02 20 62313180 62313250 71 - 1.665 1.773 0.365
ENSG00000130702 E028 72.0955007 0.0073157740 5.405895e-01 6.717152e-01 20 62313327 62313460 134 - 1.818 1.856 0.127
ENSG00000130702 E029 1.5833544 0.0091320969 2.702547e-01 4.088655e-01 20 62313461 62313580 120 - 0.255 0.455 1.211
ENSG00000130702 E030 66.3771159 0.0025998114 8.407162e-01 9.005851e-01 20 62313649 62313802 154 - 1.800 1.812 0.042
ENSG00000130702 E031 64.3152309 0.0011745457 8.062113e-01 8.768058e-01 20 62314304 62314440 137 - 1.780 1.794 0.048
ENSG00000130702 E032 2.3479171 0.0159374856 2.082006e-03 7.478759e-03 20 62314441 62314554 114 - 0.764 0.254 -2.594
ENSG00000130702 E033 55.4290400 0.0004584830 7.403788e-01 8.298184e-01 20 62314555 62314725 171 - 1.737 1.723 -0.048
ENSG00000130702 E034 1.5531429 0.0724718045 2.943997e-03 1.009926e-02 20 62314726 62314798 73 - 0.663 0.102 -3.760
ENSG00000130702 E035 50.9689970 0.0004672920 5.211035e-01 6.550036e-01 20 62314799 62314947 149 - 1.669 1.703 0.118
ENSG00000130702 E036 38.8967642 0.0005960625 4.602621e-01 6.003117e-01 20 62315028 62315095 68 - 1.544 1.590 0.154
ENSG00000130702 E037 49.8120519 0.0034393551 9.217314e-01 9.546104e-01 20 62315096 62315207 112 - 1.673 1.682 0.032
ENSG00000130702 E038 45.5418582 0.0005204956 5.699922e-01 6.965003e-01 20 62315948 62316058 111 - 1.617 1.650 0.112
ENSG00000130702 E039 4.8285838 0.0033895289 9.648871e-04 3.838134e-03 20 62316059 62316322 264 - 0.973 0.529 -1.818
ENSG00000130702 E040 37.8138739 0.0005982695 9.526211e-01 9.743297e-01 20 62316671 62316773 103 - 1.564 1.562 -0.006
ENSG00000130702 E041 30.6426345 0.0169948180 4.632839e-01 6.030947e-01 20 62316882 62317023 142 - 1.513 1.456 -0.197
ENSG00000130702 E042 33.6351742 0.0008595688 6.318820e-01 7.468349e-01 20 62317345 62317499 155 - 1.529 1.501 -0.095
ENSG00000130702 E043 31.5800968 0.0025499719 7.150239e-01 8.110743e-01 20 62317662 62317778 117 - 1.497 1.476 -0.071
ENSG00000130702 E044 35.1214437 0.0121734394 3.521725e-01 4.964360e-01 20 62318454 62318534 81 - 1.573 1.507 -0.224
ENSG00000130702 E045 38.6593366 0.0012110589 4.123996e-01 5.559476e-01 20 62318535 62318650 116 - 1.596 1.550 -0.156
ENSG00000130702 E046 43.7828434 0.0010239139 3.662593e-01 5.105959e-01 20 62318843 62319013 171 - 1.650 1.602 -0.162
ENSG00000130702 E047 1.1028881 0.0121581590 3.598157e-01 5.041304e-01 20 62319014 62319112 99 - 0.415 0.254 -1.013
ENSG00000130702 E048 33.8150460 0.0009608873 9.258551e-04 3.705513e-03 20 62319684 62319795 112 - 1.634 1.435 -0.681
ENSG00000130702 E049 32.5811239 0.0006285487 1.771323e-02 4.651675e-02 20 62320559 62320669 111 - 1.587 1.443 -0.493
ENSG00000130702 E050 38.3836585 0.0097546353 3.029213e-01 4.448335e-01 20 62320739 62320890 152 - 1.613 1.544 -0.235
ENSG00000130702 E051 28.8952922 0.0154687572 7.144069e-01 8.106268e-01 20 62322019 62322168 150 - 1.469 1.442 -0.090
ENSG00000130702 E052 26.3191042 0.0105415118 1.974198e-01 3.230008e-01 20 62322269 62322449 181 - 1.475 1.373 -0.350
ENSG00000130702 E053 19.3884617 0.0016824176 4.688643e-01 6.082191e-01 20 62322658 62322758 101 - 1.241 1.303 0.217
ENSG00000130702 E054 32.9685187 0.0061376392 7.292417e-01 8.214669e-01 20 62323456 62323670 215 - 1.480 1.512 0.109
ENSG00000130702 E055 18.4901749 0.0066067050 3.122303e-01 4.547603e-01 20 62323776 62323856 81 - 1.314 1.230 -0.297
ENSG00000130702 E056 26.6695772 0.0007566190 1.882077e-02 4.893885e-02 20 62324080 62324204 125 - 1.508 1.351 -0.542
ENSG00000130702 E057 27.3745136 0.0113940305 2.973977e-02 7.144447e-02 20 62324441 62324554 114 - 1.535 1.355 -0.620
ENSG00000130702 E058 7.7672597 0.0080516629 3.807363e-05 2.206084e-04 20 62324555 62324871 317 - 1.165 0.674 -1.873
ENSG00000130702 E059 2.1787964 0.0065961051 1.791251e-02 4.694732e-02 20 62325140 62325315 176 - 0.699 0.313 -1.919
ENSG00000130702 E060 35.5914879 0.0013571319 1.656860e-02 4.399075e-02 20 62325316 62325546 231 - 1.626 1.483 -0.487
ENSG00000130702 E061 2.1359194 0.0376699570 3.346538e-01 4.783974e-01 20 62326460 62326676 217 - 0.580 0.413 -0.816
ENSG00000130702 E062 23.6676190 0.0211826017 1.451334e-01 2.550186e-01 20 62326677 62326760 84 - 1.450 1.314 -0.472
ENSG00000130702 E063 25.1464443 0.0018468703 2.422707e-01 3.768604e-01 20 62326865 62326966 102 - 1.438 1.357 -0.280
ENSG00000130702 E064 30.3580973 0.0148701398 4.699066e-01 6.091320e-01 20 62327233 62327406 174 - 1.497 1.448 -0.167
ENSG00000130702 E065 29.2999508 0.0050817875 7.055553e-01 8.038956e-01 20 62327529 62327669 141 - 1.469 1.445 -0.080
ENSG00000130702 E066 30.7137269 0.0008425274 1.683360e-01 2.860310e-01 20 62327866 62328010 145 - 1.529 1.443 -0.295
ENSG00000130702 E067 34.9197549 0.0119343596 1.376347e-02 3.768342e-02 20 62328241 62328445 205 - 1.642 1.452 -0.648
ENSG00000130702 E068 34.2486011 0.0127641432 1.934536e-03 7.023295e-03 20 62328844 62329055 212 - 1.665 1.421 -0.833
ENSG00000130702 E069 22.5179210 0.0171358498 4.567956e-02 1.014478e-01 20 62329138 62329253 116 - 1.462 1.275 -0.652
ENSG00000130702 E070 22.1963930 0.0103163944 3.871898e-03 1.278332e-02 20 62329777 62329916 140 - 1.486 1.236 -0.867
ENSG00000130702 E071 17.8673091 0.0011047963 3.759124e-03 1.246573e-02 20 62330488 62330614 127 - 1.391 1.161 -0.807
ENSG00000130702 E072 23.8785745 0.0010046648 1.708282e-04 8.387211e-04 20 62330743 62330944 202 - 1.519 1.254 -0.917
ENSG00000130702 E073 16.3771001 0.0113654504 8.412850e-03 2.481996e-02 20 62331032 62331129 98 - 1.354 1.106 -0.878
ENSG00000130702 E074 18.0950260 0.0166911716 2.728710e-01 4.118336e-01 20 62332372 62332480 109 - 1.314 1.213 -0.355
ENSG00000130702 E075 0.0000000       20 62332487 62332556 70 -      
ENSG00000130702 E076 22.3731465 0.0016528628 8.256953e-02 1.635668e-01 20 62332557 62332717 161 - 1.419 1.291 -0.443
ENSG00000130702 E077 25.5236260 0.0065654270 1.233786e-01 2.247688e-01 20 62333090 62333243 154 - 1.469 1.353 -0.399
ENSG00000130702 E078 22.8566631 0.0154888781 3.508889e-02 8.181621e-02 20 62333375 62333481 107 - 1.457 1.274 -0.636
ENSG00000130702 E079 21.0192585 0.0009951194 4.153234e-04 1.833006e-03 20 62333564 62333706 143 - 1.463 1.200 -0.917
ENSG00000130702 E080 27.9272682 0.0080430503 4.283476e-03 1.393693e-02 20 62333901 62334039 139 - 1.559 1.345 -0.739
ENSG00000130702 E081 23.0766506 0.0482686073 1.137617e-01 2.110067e-01 20 62334186 62334301 116 - 1.463 1.286 -0.613
ENSG00000130702 E082 15.2198206 0.0336243386 1.173379e-01 2.161460e-01 20 62334302 62334342 41 - 1.287 1.111 -0.624
ENSG00000130702 E083 19.4943693 0.0230552600 2.596451e-02 6.387350e-02 20 62334522 62334621 100 - 1.412 1.193 -0.768
ENSG00000130702 E084 16.2224196 0.0213198038 4.768229e-03 1.528423e-02 20 62335021 62335126 106 - 1.377 1.079 -1.056
ENSG00000130702 E085 14.0116226 0.0084730650 3.704805e-03 1.231120e-02 20 62335217 62335269 53 - 1.314 1.034 -0.999
ENSG00000130702 E086 16.2963853 0.0076491083 1.307858e-02 3.609383e-02 20 62336340 62336445 106 - 1.346 1.121 -0.796
ENSG00000130702 E087 15.3557315 0.0056664970 1.207538e-01 2.210370e-01 20 62336734 62336786 53 - 1.270 1.130 -0.496
ENSG00000130702 E088 0.2214452 0.0363063963 7.095854e-01   20 62336904 62336986 83 - 0.000 0.102 8.995
ENSG00000130702 E089 21.6521848 0.0029214951 1.603101e-03 5.971111e-03 20 62337590 62337727 138 - 1.463 1.222 -0.839
ENSG00000130702 E090 19.9314143 0.0082598953 1.404283e-04 7.054276e-04 20 62337804 62337938 135 - 1.475 1.147 -1.145
ENSG00000130702 E091 19.6770220 0.0031966534 5.168890e-05 2.901510e-04 20 62338016 62338150 135 - 1.469 1.146 -1.129
ENSG00000130702 E092 21.1355409 0.0021057682 3.433701e-05 2.012326e-04 20 62338232 62338369 138 - 1.492 1.178 -1.096
ENSG00000130702 E093 19.2450329 0.0034047060 1.360788e-07 1.347455e-06 20 62338468 62338608 141 - 1.503 1.075 -1.502
ENSG00000130702 E094 1.1028855 0.0117779548 2.719472e-02 6.638778e-02 20 62345414 62345585 172 - 0.000 0.413 11.594
ENSG00000130702 E095 17.2222727 0.0010786228 1.772569e-02 4.654236e-02 20 62345818 62345877 60 - 1.347 1.154 -0.680
ENSG00000130702 E096 26.2674678 0.0007219566 2.251267e-05 1.379486e-04 20 62346081 62346215 135 - 1.573 1.291 -0.975
ENSG00000130702 E097 17.2139514 0.0010520528 3.615257e-07 3.289149e-06 20 62346506 62346557 52 - 1.457 1.044 -1.457
ENSG00000130702 E098 13.5863748 0.0014027415 7.998606e-06 5.432394e-05 20 62346558 62346596 39 - 1.354 0.951 -1.444
ENSG00000130702 E099 19.3686194 0.0032324373 2.964691e-06 2.220845e-05 20 62346682 62346800 119 - 1.486 1.112 -1.311
ENSG00000130702 E100 17.0340649 0.0080128827 1.387484e-03 5.265731e-03 20 62346913 62347028 116 - 1.391 1.104 -1.011
ENSG00000130702 E101 1.2470141 0.0109621011 5.430968e-01 6.737503e-01 20 62350988 62351257 270 - 0.255 0.366 0.727
ENSG00000130702 E102 18.9479078 0.0018018600 9.125294e-03 2.659589e-02 20 62351704 62351801 98 - 1.391 1.185 -0.722
ENSG00000130702 E103 21.7716676 0.0041202346 7.465265e-06 5.104385e-05 20 62351909 62352079 171 - 1.519 1.171 -1.212
ENSG00000130702 E104 16.8864611 0.0422101242 5.731326e-02 1.220076e-01 20 62352242 62352360 119 - 1.347 1.135 -0.747
ENSG00000130702 E105 13.1801116 0.0041610646 4.459424e-03 1.442788e-02 20 62353134 62353251 118 - 1.279 1.012 -0.957
ENSG00000130702 E106 15.2671051 0.0011367974 9.294663e-04 3.717453e-03 20 62362400 62362552 153 - 1.347 1.064 -1.002
ENSG00000130702 E107 8.5060576 0.0020954727 8.472112e-05 4.503665e-04 20 62366949 62367312 364 - 1.188 0.761 -1.597