ENSG00000130640

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000417178 ENSG00000130640 HEK293_OSMI2_2hA HEK293_TMG_2hB TUBGCP2 protein_coding protein_coding 89.2095 127.4615 68.72289 6.710091 1.026251 -0.8911025 48.689819 76.651541 32.514818 2.019293 0.5234353 -1.236962 0.5305875 0.60326667 0.4734333 -0.1298333 2.031786e-03 7.96462e-06 FALSE TRUE
ENST00000543663 ENSG00000130640 HEK293_OSMI2_2hA HEK293_TMG_2hB TUBGCP2 protein_coding protein_coding 89.2095 127.4615 68.72289 6.710091 1.026251 -0.8911025 13.176545 25.162532 7.866601 2.205514 0.3943269 -1.676205 0.1384833 0.19706667 0.1144667 -0.0826000 9.358849e-05 7.96462e-06 FALSE TRUE
ENST00000683552 ENSG00000130640 HEK293_OSMI2_2hA HEK293_TMG_2hB TUBGCP2 protein_coding processed_transcript 89.2095 127.4615 68.72289 6.710091 1.026251 -0.8911025 9.418188 2.402002 15.857648 2.402002 0.6161123 2.717785 0.1267542 0.01706667 0.2306000 0.2135333 2.853754e-02 7.96462e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000130640 E001 6.2958431 2.622546e-03 6.256257e-01 7.417137e-01 10 133278635 133278656 22 - 0.854 0.790 -0.251
ENSG00000130640 E002 7.2244006 2.300653e-03 3.856768e-01 5.298581e-01 10 133278657 133278674 18 - 0.939 0.832 -0.410
ENSG00000130640 E003 12.1979725 8.990104e-03 9.294094e-01 9.595847e-01 10 133278675 133278710 36 - 1.070 1.062 -0.031
ENSG00000130640 E004 82.3540433 4.698964e-03 1.793966e-03 6.580341e-03 10 133278711 133279286 576 - 1.718 1.899 0.612
ENSG00000130640 E005 65.8648255 2.357140e-03 5.707976e-02 1.216048e-01 10 133279287 133279631 345 - 1.682 1.789 0.360
ENSG00000130640 E006 23.6935958 8.233379e-04 3.270068e-02 7.720261e-02 10 133279632 133279639 8 - 1.186 1.368 0.638
ENSG00000130640 E007 24.8748447 7.753864e-04 2.283999e-02 5.741043e-02 10 133279640 133279640 1 - 1.200 1.390 0.665
ENSG00000130640 E008 27.5297366 7.214399e-04 9.666043e-03 2.794108e-02 10 133279641 133279641 1 - 1.228 1.435 0.725
ENSG00000130640 E009 392.9696089 1.458225e-03 6.974578e-13 1.755664e-11 10 133279642 133279728 87 - 2.369 2.578 0.694
ENSG00000130640 E010 636.7838749 1.558328e-03 1.786652e-18 9.537220e-17 10 133279729 133279821 93 - 2.561 2.790 0.764
ENSG00000130640 E011 780.0607094 1.998420e-03 1.686215e-16 7.056705e-15 10 133279822 133279901 80 - 2.654 2.877 0.743
ENSG00000130640 E012 1183.8614526 1.183324e-03 4.578702e-23 4.087754e-21 10 133281273 133281436 164 - 2.849 3.055 0.684
ENSG00000130640 E013 26.7257645 2.805120e-02 1.237308e-01 2.252674e-01 10 133281437 133282106 670 - 1.488 1.329 -0.547
ENSG00000130640 E014 7.7652473 2.152322e-03 5.685190e-01 6.951918e-01 10 133282107 133282222 116 - 0.939 0.870 -0.263
ENSG00000130640 E015 912.1060100 5.872266e-04 2.224101e-23 2.049364e-21 10 133282223 133282342 120 - 2.754 2.937 0.608
ENSG00000130640 E016 18.0165817 3.155667e-02 1.749995e-04 8.569134e-04 10 133282343 133283027 685 - 1.501 1.057 -1.561
ENSG00000130640 E017 2.3677608 1.321883e-01 5.477933e-02 1.176126e-01 10 133283035 133283077 43 - 0.749 0.348 -1.909
ENSG00000130640 E018 874.9480597 1.776393e-03 3.992473e-06 2.905397e-05 10 133283078 133283184 107 - 2.791 2.906 0.383
ENSG00000130640 E019 644.0926851 1.191672e-03 1.755272e-03 6.456788e-03 10 133283185 133283221 37 - 2.691 2.765 0.246
ENSG00000130640 E020 841.6783709 2.102421e-03 5.331527e-03 1.683322e-02 10 133283882 133284002 121 - 2.807 2.882 0.249
ENSG00000130640 E021 44.4769622 1.792171e-02 3.830933e-04 1.709196e-03 10 133284003 133285084 1082 - 1.793 1.499 -0.999
ENSG00000130640 E022 827.4941028 4.339546e-04 2.658397e-03 9.248299e-03 10 133285085 133285213 129 - 2.816 2.868 0.174
ENSG00000130640 E023 22.6349062 8.331529e-04 3.473931e-02 8.114891e-02 10 133285214 133285455 242 - 1.425 1.264 -0.561
ENSG00000130640 E024 896.7504566 1.062402e-03 6.510134e-01 7.619750e-01 10 133285456 133285595 140 - 2.896 2.888 -0.028
ENSG00000130640 E025 560.3593798 1.711400e-04 3.494087e-01 4.936163e-01 10 133285596 133285628 33 - 2.698 2.682 -0.053
ENSG00000130640 E026 580.2324855 6.627463e-04 9.817107e-01 9.926195e-01 10 133288129 133288159 31 - 2.702 2.702 0.001
ENSG00000130640 E027 561.7518019 1.421857e-03 2.341001e-01 3.672690e-01 10 133288160 133288193 34 - 2.665 2.695 0.101
ENSG00000130640 E028 782.3013564 2.346374e-04 4.775733e-01 6.160995e-01 10 133288194 133288278 85 - 2.839 2.829 -0.034
ENSG00000130640 E029 498.6752263 1.241358e-04 6.739024e-01 7.794710e-01 10 133288279 133288309 31 - 2.642 2.635 -0.023
ENSG00000130640 E030 865.5569882 9.124539e-05 4.200771e-01 5.633032e-01 10 133288840 133288932 93 - 2.883 2.872 -0.035
ENSG00000130640 E031 799.0238929 1.406376e-04 9.829218e-02 1.879255e-01 10 133288933 133289020 88 - 2.859 2.835 -0.078
ENSG00000130640 E032 1055.5352608 1.240777e-04 1.552529e-07 1.520086e-06 10 133289824 133289969 146 - 3.010 2.944 -0.220
ENSG00000130640 E033 4.0649901 1.005851e-02 7.158192e-01 8.116362e-01 10 133289970 133291034 1065 - 0.708 0.653 -0.228
ENSG00000130640 E034 993.9390577 1.518155e-04 6.546954e-13 1.657048e-11 10 133292499 133292688 190 - 3.003 2.909 -0.314
ENSG00000130640 E035 1.3630274 1.345606e-01 4.136595e-01 5.570962e-01 10 133292689 133292825 137 - 0.180 0.357 1.313
ENSG00000130640 E036 923.0524566 6.873559e-04 7.682869e-04 3.144232e-03 10 133293039 133293238 200 - 2.946 2.887 -0.195
ENSG00000130640 E037 17.4122722 1.395721e-03 2.455517e-04 1.156729e-03 10 133293239 133293561 323 - 1.417 1.113 -1.068
ENSG00000130640 E038 970.8630394 1.262417e-03 5.545929e-07 4.865065e-06 10 133293562 133293769 208 - 2.999 2.897 -0.340
ENSG00000130640 E039 7.3048283 2.514301e-03 8.856849e-02 1.729370e-01 10 133295187 133295279 93 - 1.010 0.804 -0.780
ENSG00000130640 E040 2.8733315 9.405137e-03 8.330166e-01 8.953806e-01 10 133295280 133295282 3 - 0.552 0.516 -0.169
ENSG00000130640 E041 1.8047004 1.069403e-02 5.884227e-01 7.116131e-01 10 133295322 133295363 42 - 0.484 0.388 -0.504
ENSG00000130640 E042 6.2592863 2.747098e-03 1.300021e-01 2.341736e-01 10 133295364 133295439 76 - 0.939 0.744 -0.757
ENSG00000130640 E043 8.5971249 2.110560e-03 3.777323e-03 1.251819e-02 10 133295524 133295544 21 - 1.140 0.818 -1.199
ENSG00000130640 E044 21.9278086 1.625052e-02 3.485965e-05 2.038793e-04 10 133295545 133295864 320 - 1.555 1.161 -1.370
ENSG00000130640 E045 9.6157612 8.149038e-03 6.207500e-04 2.609199e-03 10 133295865 133295911 47 - 1.214 0.832 -1.408
ENSG00000130640 E046 16.1317335 1.187554e-03 2.545663e-07 2.390899e-06 10 133295912 133296208 297 - 1.450 1.013 -1.546
ENSG00000130640 E047 18.6521314 2.971362e-03 1.101054e-07 1.110060e-06 10 133296756 133297320 565 - 1.516 1.084 -1.511
ENSG00000130640 E048 3.2096733 4.776423e-03 4.500247e-01 5.911996e-01 10 133297321 133297404 84 - 0.662 0.542 -0.533
ENSG00000130640 E049 16.5322315 1.089962e-03 3.480352e-09 4.667248e-08 10 133297405 133297951 547 - 1.487 0.995 -1.741
ENSG00000130640 E050 455.5552352 1.041628e-03 5.929677e-11 1.085896e-09 10 133297952 133297986 35 - 2.706 2.554 -0.506
ENSG00000130640 E051 682.8316156 2.798989e-03 9.452443e-04 3.772355e-03 10 133297987 133298111 125 - 2.842 2.747 -0.316
ENSG00000130640 E052 725.6593969 5.510857e-03 3.619343e-01 5.063438e-01 10 133299427 133299603 177 - 2.823 2.790 -0.108
ENSG00000130640 E053 656.9704787 3.427612e-03 6.219788e-02 1.303466e-01 10 133299985 133300100 116 - 2.798 2.740 -0.193
ENSG00000130640 E054 313.3786953 4.158151e-03 5.511645e-03 1.731760e-02 10 133300101 133300113 13 - 2.510 2.405 -0.350
ENSG00000130640 E055 10.0437671 2.465226e-03 2.616977e-06 1.985735e-05 10 133300114 133300451 338 - 1.289 0.804 -1.780
ENSG00000130640 E056 4.3940968 3.576722e-02 1.401017e-03 5.310281e-03 10 133300452 133300547 96 - 0.987 0.488 -2.069
ENSG00000130640 E057 13.8977270 1.279151e-03 5.207251e-14 1.542850e-12 10 133300548 133301490 943 - 1.502 0.832 -2.410
ENSG00000130640 E058 6.8943725 9.393446e-03 1.577988e-06 1.254968e-05 10 133301701 133302758 1058 - 1.200 0.612 -2.263
ENSG00000130640 E059 9.0895065 2.064875e-03 3.525912e-01 4.968452e-01 10 133302759 133302791 33 - 1.031 0.926 -0.389
ENSG00000130640 E060 606.1757090 4.680153e-03 6.880437e-05 3.743260e-04 10 133302792 133302951 160 - 2.822 2.681 -0.472
ENSG00000130640 E061 263.3887190 7.314692e-03 2.796966e-04 1.297223e-03 10 133302952 133302980 29 - 2.480 2.310 -0.565
ENSG00000130640 E062 3.4581724 2.669655e-02 8.111062e-01 8.801741e-01 10 133302981 133303016 36 - 0.552 0.593 0.189
ENSG00000130640 E063 0.6298062 1.838905e-02 8.847753e-01 9.303356e-01 10 133303350 133303423 74 - 0.180 0.209 0.272
ENSG00000130640 E064 0.2214452 4.104930e-02 1.000000e+00   10 133306819 133306874 56 - 0.000 0.082 9.196
ENSG00000130640 E065 276.2428427 1.116446e-02 3.527325e-07 3.215790e-06 10 133308823 133309134 312 - 2.572 2.291 -0.936
ENSG00000130640 E066 0.1472490 4.309628e-02 1.946774e-01   10 133311620 133311715 96 - 0.180 0.000 -11.599
ENSG00000130640 E067 1.9961445 2.207350e-01 3.250980e-01 4.685237e-01 10 133311716 133312166 451 - 0.552 0.362 -0.978
ENSG00000130640 E068 0.0000000       10 133312167 133312247 81 -      
ENSG00000130640 E069 1.1071545 1.137025e-02 1.213440e-01 2.218451e-01 10 133312248 133313154 907 - 0.484 0.209 -1.726
ENSG00000130640 E070 0.8417882 1.651046e-02 5.942321e-01 7.164936e-01 10 133318548 133318823 276 - 0.306 0.210 -0.724