ENSG00000130414

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000485344 ENSG00000130414 HEK293_OSMI2_2hA HEK293_TMG_2hB NDUFA10 protein_coding retained_intron 95.00844 121.2421 77.11085 8.609601 0.8989701 -0.6528169 7.501292 4.976683 8.573336 0.266438 0.03986834 0.7834581 0.0847250 0.04146667 0.1112000 0.06973333 5.823741e-13 5.823741e-13 TRUE TRUE
ENST00000620965 ENSG00000130414 HEK293_OSMI2_2hA HEK293_TMG_2hB NDUFA10 protein_coding protein_coding 95.00844 121.2421 77.11085 8.609601 0.8989701 -0.6528169 30.134712 49.009946 12.498617 6.004902 0.75077375 -1.9704466 0.3031917 0.40183333 0.1622333 -0.23960000 1.096747e-11 5.823741e-13 FALSE TRUE
MSTRG.20164.6 ENSG00000130414 HEK293_OSMI2_2hA HEK293_TMG_2hB NDUFA10 protein_coding   95.00844 121.2421 77.11085 8.609601 0.8989701 -0.6528169 44.800684 55.067667 44.737484 2.585858 1.77584814 -0.2996609 0.4760708 0.45620000 0.5798000 0.12360000 4.172095e-03 5.823741e-13 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000130414 E001 5.9344103 2.729740e-03 8.010750e-01 8.732299e-01 2 239892450 239892678 229 - 0.797 0.832 0.137
ENSG00000130414 E002 4.7228838 3.396523e-03 9.243425e-01 9.563370e-01 2 239892679 239892707 29 - 0.731 0.747 0.063
ENSG00000130414 E003 6.7502876 2.430589e-03 7.010829e-01 8.003928e-01 2 239895205 239895314 110 - 0.826 0.876 0.192
ENSG00000130414 E004 0.9545949 1.615949e-02 1.271616e-01 2.301754e-01 2 239912249 239912434 186 - 0.440 0.171 -1.861
ENSG00000130414 E005 1.5521238 4.779406e-02 7.576892e-03 2.271126e-02 2 239912801 239912990 190 - 0.654 0.171 -2.861
ENSG00000130414 E006 0.3697384 2.744240e-02 4.152868e-01 5.586749e-01 2 239938374 239938710 337 - 0.000 0.171 11.535
ENSG00000130414 E007 1.7809428 9.130132e-03 6.156129e-02 1.292628e-01 2 239945616 239945651 36 - 0.610 0.294 -1.669
ENSG00000130414 E008 7.9547179 5.236599e-02 4.532348e-01 5.939924e-01 2 239949560 239951018 1459 - 0.990 0.871 -0.450
ENSG00000130414 E009 0.6234634 1.859970e-02 6.660519e-01 7.735788e-01 2 239957358 239957370 13 - 0.158 0.236 0.720
ENSG00000130414 E010 0.6234634 1.859970e-02 6.660519e-01 7.735788e-01 2 239957371 239957371 1 - 0.158 0.236 0.720
ENSG00000130414 E011 0.6234634 1.859970e-02 6.660519e-01 7.735788e-01 2 239957372 239957372 1 - 0.158 0.236 0.720
ENSG00000130414 E012 0.6234634 1.859970e-02 6.660519e-01 7.735788e-01 2 239957373 239957373 1 - 0.158 0.236 0.720
ENSG00000130414 E013 0.6234634 1.859970e-02 6.660519e-01 7.735788e-01 2 239957374 239957386 13 - 0.158 0.236 0.720
ENSG00000130414 E014 0.7717566 1.676050e-02 4.633695e-01 6.031645e-01 2 239957387 239957390 4 - 0.158 0.293 1.134
ENSG00000130414 E015 0.7717566 1.676050e-02 4.633695e-01 6.031645e-01 2 239957391 239957405 15 - 0.158 0.293 1.134
ENSG00000130414 E016 0.7717566 1.676050e-02 4.633695e-01 6.031645e-01 2 239957406 239957408 3 - 0.158 0.293 1.134
ENSG00000130414 E017 74.8188089 7.874091e-03 4.694014e-01 6.086409e-01 2 239957409 239958536 1128 - 1.881 1.831 -0.169
ENSG00000130414 E018 38.0528007 6.035643e-04 2.807907e-02 6.817068e-02 2 239958537 239959037 501 - 1.648 1.523 -0.426
ENSG00000130414 E019 144.1917449 3.859030e-04 5.479981e-12 1.190011e-10 2 239959038 239960738 1701 - 2.264 2.052 -0.708
ENSG00000130414 E020 11.8201989 1.472071e-03 3.964431e-01 5.402088e-01 2 239960739 239960739 1 - 1.137 1.056 -0.295
ENSG00000130414 E021 11.9674479 1.443448e-03 3.197782e-01 4.628639e-01 2 239960740 239960740 1 - 1.151 1.056 -0.343
ENSG00000130414 E022 107.9048650 5.349887e-03 8.645014e-07 7.279634e-06 2 239960741 239960781 41 - 1.810 2.080 0.905
ENSG00000130414 E023 154.9058639 3.930433e-03 6.594315e-10 1.012131e-08 2 239960782 239960805 24 - 1.952 2.238 0.956
ENSG00000130414 E024 176.3316165 4.847899e-03 4.434985e-09 5.833874e-08 2 239960806 239960832 27 - 2.014 2.291 0.929
ENSG00000130414 E025 266.6638928 3.406216e-03 3.890057e-13 1.017365e-11 2 239960833 239960883 51 - 2.188 2.470 0.941
ENSG00000130414 E026 351.6191112 2.551668e-03 3.499969e-14 1.062424e-12 2 239960884 239960954 71 - 2.332 2.583 0.838
ENSG00000130414 E027 348.5051522 2.494851e-03 1.761029e-11 3.518844e-10 2 239960955 239961022 68 - 2.352 2.573 0.736
ENSG00000130414 E028 571.4031429 4.436530e-03 1.245923e-05 8.098967e-05 2 239961023 239961163 141 - 2.613 2.770 0.523
ENSG00000130414 E029 376.0874019 9.703231e-04 1.015546e-07 1.029716e-06 2 239961164 239961186 23 - 2.453 2.586 0.444
ENSG00000130414 E030 0.4481018 4.633212e-02 1.000000e+00 1.000000e+00 2 239964183 239964261 79 - 0.158 0.170 0.130
ENSG00000130414 E031 10.9788999 1.931536e-03 9.414871e-01 9.672082e-01 2 239969221 239969762 542 - 1.062 1.056 -0.022
ENSG00000130414 E032 2.8494998 1.282622e-02 3.462629e-01 4.904119e-01 2 239972240 239972726 487 - 0.654 0.502 -0.691
ENSG00000130414 E033 16.8020158 1.424018e-02 1.772152e-04 8.663298e-04 2 239972727 239973384 658 - 1.437 1.065 -1.312
ENSG00000130414 E034 7.2612270 2.516603e-03 1.137178e-02 3.205161e-02 2 239973385 239973656 272 - 1.062 0.766 -1.124
ENSG00000130414 E035 1.8981297 7.518556e-02 1.649903e-02 4.384290e-02 2 239973657 239973661 5 - 0.695 0.237 -2.447
ENSG00000130414 E036 0.0000000       2 239976505 239976585 81 -      
ENSG00000130414 E037 0.2966881 2.927372e-02 8.463261e-02   2 239982115 239982219 105 - 0.274 0.000 -13.288
ENSG00000130414 E038 0.0000000       2 239983517 239983717 201 -      
ENSG00000130414 E039 0.5901540 2.024286e-02 1.113214e-01 2.074881e-01 2 239987516 239987578 63 - 0.365 0.094 -2.449
ENSG00000130414 E040 0.2965864 7.331047e-02 4.379231e-01   2 239987915 239987929 15 - 0.000 0.170 11.160
ENSG00000130414 E041 0.2965864 7.331047e-02 4.379231e-01   2 239987930 239987953 24 - 0.000 0.170 11.160
ENSG00000130414 E042 0.0000000       2 239987954 239987961 8 -      
ENSG00000130414 E043 0.0000000       2 239987962 239987973 12 -      
ENSG00000130414 E044 2.5860089 5.861443e-03 8.586729e-01 9.128215e-01 2 239987974 239988445 472 - 0.560 0.533 -0.127
ENSG00000130414 E045 0.6213751 1.956084e-02 1.125933e-01 2.093417e-01 2 239988446 239988448 3 - 0.365 0.094 -2.446
ENSG00000130414 E046 4.0146427 2.484062e-02 2.784028e-01 4.180938e-01 2 239988449 239988612 164 - 0.797 0.638 -0.654
ENSG00000130414 E047 4.3449299 3.716023e-03 8.605229e-02 1.690712e-01 2 239988613 239989251 639 - 0.854 0.617 -0.969
ENSG00000130414 E048 1.3566106 9.783700e-03 1.456563e-01 2.557405e-01 2 239989252 239989342 91 - 0.158 0.430 1.945
ENSG00000130414 E049 2.5410687 6.451638e-03 1.981731e-01 3.239172e-01 2 239989343 239989896 554 - 0.365 0.590 1.137
ENSG00000130414 E050 1.2104969 1.408984e-01 1.987210e-01 3.245859e-01 2 239989897 239990073 177 - 0.504 0.234 -1.615
ENSG00000130414 E051 717.9008912 1.253358e-04 2.541693e-10 4.179464e-09 2 239990074 239990182 109 - 2.763 2.857 0.315
ENSG00000130414 E052 2.2572590 6.320459e-03 3.074736e-02 7.341536e-02 2 239990183 239993569 3387 - 0.694 0.344 -1.710
ENSG00000130414 E053 4.6853977 3.651767e-03 3.318389e-02 7.816782e-02 2 240000183 240000387 205 - 0.904 0.617 -1.162
ENSG00000130414 E054 752.4277495 8.728922e-05 1.005527e-04 5.244305e-04 2 240005210 240005286 77 - 2.810 2.866 0.185
ENSG00000130414 E055 467.5203033 1.562497e-04 1.919828e-01 3.162497e-01 2 240005287 240005295 9 - 2.627 2.651 0.082
ENSG00000130414 E056 636.5619533 4.004312e-04 2.083058e-01 3.364558e-01 2 240007316 240007370 55 - 2.761 2.782 0.071
ENSG00000130414 E057 662.3210768 1.388981e-03 8.708790e-01 9.209943e-01 2 240011617 240011696 80 - 2.796 2.789 -0.025
ENSG00000130414 E058 152.9635757 1.715226e-03 1.903745e-33 4.155055e-31 2 240011697 240012331 635 - 2.396 1.979 -1.397
ENSG00000130414 E059 47.2167382 9.566420e-03 2.792975e-11 5.408573e-10 2 240012332 240012486 155 - 1.910 1.448 -1.571
ENSG00000130414 E060 35.6624299 4.815735e-02 3.425516e-04 1.550481e-03 2 240012487 240012534 48 - 1.773 1.346 -1.460
ENSG00000130414 E061 391.3332739 2.979288e-03 2.876599e-43 1.213726e-40 2 240012535 240014694 2160 - 2.812 2.369 -1.476
ENSG00000130414 E062 33.8846230 6.117570e-04 2.116513e-12 4.922862e-11 2 240014695 240014738 44 - 1.750 1.333 -1.430
ENSG00000130414 E063 504.7642886 1.318391e-03 2.928529e-01 4.338714e-01 2 240014739 240014768 30 - 2.693 2.664 -0.095
ENSG00000130414 E064 661.9932055 1.140833e-04 1.139707e-02 3.211095e-02 2 240014769 240014840 72 - 2.817 2.781 -0.121
ENSG00000130414 E065 476.7537684 8.264108e-04 4.544259e-02 1.010086e-01 2 240014841 240014860 20 - 2.679 2.635 -0.146
ENSG00000130414 E066 0.0000000       2 240017815 240017905 91 -      
ENSG00000130414 E067 4.1482082 1.452182e-01 1.553033e-01 2.687997e-01 2 240018407 240018523 117 - 0.440 0.774 1.494
ENSG00000130414 E068 5.4296671 7.187321e-02 4.796681e-01 6.180209e-01 2 240018524 240018552 29 - 0.694 0.827 0.534
ENSG00000130414 E069 361.6893009 1.941913e-04 3.107442e-02 7.405441e-02 2 240018553 240018554 2 - 2.559 2.516 -0.141
ENSG00000130414 E070 659.9005287 1.980052e-04 3.111502e-01 4.535955e-01 2 240018555 240018639 85 - 2.801 2.785 -0.052
ENSG00000130414 E071 1.4080839 9.132097e-03 9.635950e-04 3.833960e-03 2 240021087 240021116 30 - 0.654 0.094 -3.861
ENSG00000130414 E072 2.8891309 5.311164e-03 8.099434e-04 3.294217e-03 2 240021117 240021196 80 - 0.854 0.344 -2.349
ENSG00000130414 E073 981.6781085 9.122972e-05 6.090176e-02 1.281520e-01 2 240021197 240021412 216 - 2.979 2.957 -0.072
ENSG00000130414 E074 0.1482932 4.058511e-02 8.275335e-01   2 240021771 240021860 90 - 0.000 0.094 10.386
ENSG00000130414 E075 814.5493301 5.381580e-04 3.970696e-01 5.408466e-01 2 240022172 240022340 169 - 2.892 2.876 -0.055
ENSG00000130414 E076 284.7445253 4.774560e-03 5.060652e-02 1.102351e-01 2 240025227 240025229 3 - 2.481 2.395 -0.286
ENSG00000130414 E077 361.1991385 2.939771e-03 3.675844e-02 8.501222e-02 2 240025230 240025247 18 - 2.577 2.503 -0.246
ENSG00000130414 E078 403.8766516 6.308358e-03 1.978271e-01 3.235055e-01 2 240025248 240025397 150 - 2.618 2.554 -0.213
ENSG00000130414 E079 0.5514428 2.007500e-02 2.210707e-01 3.516927e-01 2 240025572 240025743 172 - 0.000 0.237 12.235