ENSG00000130158

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000294618 ENSG00000130158 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK6 protein_coding protein_coding 9.060392 13.21047 7.521628 0.7194322 0.7350137 -0.8117399 0.3501415 0.7336959 0.0000000 0.4231028 0.00000000 -6.2166408 0.03636667 0.05443333 0.00000000 -0.05443333 0.216337903 0.004697933 FALSE TRUE
ENST00000586702 ENSG00000130158 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK6 protein_coding processed_transcript 9.060392 13.21047 7.521628 0.7194322 0.7350137 -0.8117399 2.0858884 4.6145588 0.8573829 0.6672038 0.28327506 -2.4145748 0.19741250 0.34830000 0.10823333 -0.24006667 0.004697933 0.004697933 FALSE TRUE
ENST00000587656 ENSG00000130158 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK6 protein_coding protein_coding 9.060392 13.21047 7.521628 0.7194322 0.7350137 -0.8117399 2.2197842 3.6913138 1.5238182 0.2289377 0.10797236 -1.2709100 0.23627917 0.27923333 0.20753333 -0.07170000 0.233551644 0.004697933 FALSE TRUE
ENST00000592550 ENSG00000130158 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK6 protein_coding retained_intron 9.060392 13.21047 7.521628 0.7194322 0.7350137 -0.8117399 0.5613407 0.2668888 0.1766216 0.2668888 0.17662164 -0.5691902 0.06952500 0.02053333 0.02123333 0.00070000 0.989213710 0.004697933   FALSE
MSTRG.16445.4 ENSG00000130158 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK6 protein_coding   9.060392 13.21047 7.521628 0.7194322 0.7350137 -0.8117399 2.7862639 2.9495775 3.6807563 1.0764110 0.04453372 0.3185253 0.33206250 0.22543333 0.49926667 0.27383333 0.155931313 0.004697933 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000130158 E001 2.1013859 0.0071072410 1.014138e-01 1.926146e-01 19 11199295 11199302 8 - 0.259 0.556 1.676
ENSG00000130158 E002 1.9530928 0.0075086285 1.467537e-01 2.572644e-01 19 11199303 11199305 3 - 0.259 0.524 1.524
ENSG00000130158 E003 12.1439332 0.0141552525 2.605614e-02 6.406148e-02 19 11199306 11199350 45 - 0.899 1.171 0.996
ENSG00000130158 E004 43.2145208 0.0148754806 1.025291e-05 6.798682e-05 19 11199351 11199496 146 - 1.330 1.723 1.348
ENSG00000130158 E005 41.0851589 0.0034686044 7.742620e-09 9.743697e-08 19 11199497 11199539 43 - 1.295 1.705 1.408
ENSG00000130158 E006 92.8642817 0.0047377779 3.929920e-12 8.740450e-11 19 11200308 11200469 162 - 1.665 2.049 1.295
ENSG00000130158 E007 70.9951924 0.0004748073 1.659126e-12 3.919157e-11 19 11200716 11200822 107 - 1.576 1.924 1.180
ENSG00000130158 E008 101.3958489 0.0027065340 6.542036e-09 8.348731e-08 19 11200909 11201052 144 - 1.787 2.063 0.928
ENSG00000130158 E009 136.8303669 0.0141797427 2.646559e-02 6.487954e-02 19 11201889 11202081 193 - 2.006 2.164 0.530
ENSG00000130158 E010 75.9365675 0.0123044804 1.572709e-01 2.714662e-01 19 11202082 11202125 44 - 1.788 1.897 0.368
ENSG00000130158 E011 92.6494360 0.0020140095 7.876520e-03 2.346938e-02 19 11202394 11202483 90 - 1.856 1.983 0.425
ENSG00000130158 E012 5.3453042 0.0391208982 7.074272e-01 8.053504e-01 19 11202484 11202583 100 - 0.826 0.771 -0.217
ENSG00000130158 E013 98.8280371 0.0003380012 6.969187e-04 2.887849e-03 19 11202584 11202709 126 - 1.873 2.011 0.463
ENSG00000130158 E014 3.7934882 0.0044144168 6.249622e-03 1.926912e-02 19 11202710 11202715 6 - 0.876 0.489 -1.646
ENSG00000130158 E015 3.7976408 0.0256470540 1.133443e-02 3.196441e-02 19 11203282 11203313 32 - 0.876 0.489 -1.646
ENSG00000130158 E016 45.8258381 0.0100387641 1.825932e-01 3.044640e-01 19 11204081 11204095 15 - 1.566 1.677 0.377
ENSG00000130158 E017 77.1242263 0.0045941477 2.052605e-02 5.259628e-02 19 11204200 11204331 132 - 1.770 1.906 0.460
ENSG00000130158 E018 0.5911862 0.0183550231 1.159053e-02 3.256110e-02 19 11206181 11206387 207 - 0.420 0.000 -14.841
ENSG00000130158 E019 63.5659899 0.0003914044 1.230172e-01 2.242614e-01 19 11208686 11208829 144 - 1.729 1.808 0.268
ENSG00000130158 E020 65.6852055 0.0003675933 9.933746e-01 1.000000e+00 19 11208911 11209103 193 - 1.793 1.801 0.026
ENSG00000130158 E021 48.9168274 0.0013827902 7.431809e-01 8.319058e-01 19 11211776 11211876 101 - 1.657 1.682 0.086
ENSG00000130158 E022 69.1157471 0.0018628840 8.460038e-01 9.042608e-01 19 11211993 11212151 159 - 1.823 1.822 -0.004
ENSG00000130158 E023 71.8475097 0.0004466860 6.341425e-01 7.487000e-01 19 11213176 11213328 153 - 1.815 1.843 0.095
ENSG00000130158 E024 63.8817622 0.0003826812 7.972889e-01 8.706659e-01 19 11214275 11214409 135 - 1.772 1.792 0.065
ENSG00000130158 E025 69.5781106 0.0057529734 9.607873e-01 9.793136e-01 19 11214553 11214649 97 - 1.818 1.830 0.039
ENSG00000130158 E026 62.1261770 0.0064878531 7.066678e-01 8.047857e-01 19 11215387 11215471 85 - 1.787 1.773 -0.047
ENSG00000130158 E027 0.1515154 0.0426850386 3.128771e-01   19 11215611 11215800 190 - 0.148 0.000 -12.841
ENSG00000130158 E028 61.3808041 0.0020626302 9.807670e-01 9.919618e-01 19 11215801 11215927 127 - 1.766 1.773 0.024
ENSG00000130158 E029 0.1451727 0.0432661463 3.128552e-01   19 11216676 11216913 238 - 0.148 0.000 -12.840
ENSG00000130158 E030 59.2399973 0.0005413236 9.373598e-01 9.646317e-01 19 11216914 11217096 183 - 1.748 1.752 0.013
ENSG00000130158 E031 58.1228665 0.0005091202 4.178752e-01 5.611887e-01 19 11217231 11217391 161 - 1.760 1.729 -0.105
ENSG00000130158 E032 47.8092190 0.0004983212 2.798926e-02 6.799011e-02 19 11221851 11221985 135 - 1.725 1.619 -0.360
ENSG00000130158 E033 27.1947722 0.0014829948 8.162766e-02 1.621027e-01 19 11221986 11222020 35 - 1.499 1.388 -0.384
ENSG00000130158 E034 49.8091662 0.0005576110 6.926514e-02 1.421477e-01 19 11222109 11222248 140 - 1.735 1.650 -0.287
ENSG00000130158 E035 1.3274538 0.0099468612 9.502146e-01 9.728445e-01 19 11222249 11222324 76 - 0.347 0.362 0.090
ENSG00000130158 E036 52.4990103 0.0004502347 9.501836e-03 2.754223e-02 19 11222735 11222905 171 - 1.775 1.656 -0.406
ENSG00000130158 E037 32.9715114 0.0006288070 4.521299e-02 1.005820e-01 19 11222993 11223106 114 - 1.576 1.460 -0.396
ENSG00000130158 E038 42.8322524 0.0028097087 1.542951e-01 2.674898e-01 19 11227337 11227477 141 - 1.657 1.582 -0.256
ENSG00000130158 E039 0.4804688 0.0209747692 3.321073e-01 4.757409e-01 19 11228840 11228939 100 - 0.259 0.100 -1.646
ENSG00000130158 E040 27.7322137 0.0023795232 1.068795e-01 2.009388e-01 19 11228940 11229000 61 - 1.493 1.389 -0.360
ENSG00000130158 E041 22.1652765 0.0024684612 1.087794e-01 2.037363e-01 19 11229001 11229035 35 - 1.405 1.290 -0.400
ENSG00000130158 E042 7.9608822 0.0021184924 2.549646e-01 3.917396e-01 19 11229298 11229390 93 - 0.826 0.970 0.547
ENSG00000130158 E043 30.3295138 0.0051603180 4.441853e-02 9.914646e-02 19 11232185 11232289 105 - 1.551 1.417 -0.463
ENSG00000130158 E044 50.3179058 0.0004722596 8.845082e-03 2.589474e-02 19 11233203 11233366 164 - 1.763 1.640 -0.418
ENSG00000130158 E045 47.3603722 0.0006396442 6.470237e-01 7.587821e-01 19 11235598 11235759 162 - 1.672 1.655 -0.057
ENSG00000130158 E046 0.2955422 0.0301004399 7.350230e-01   19 11235899 11236345 447 - 0.148 0.100 -0.649
ENSG00000130158 E047 50.5615447 0.0004562959 3.224191e-02 7.631637e-02 19 11236346 11236577 232 - 1.748 1.648 -0.339
ENSG00000130158 E048 0.0000000       19 11236578 11236792 215 -      
ENSG00000130158 E049 24.5648116 0.0013661632 4.041023e-01 5.478105e-01 19 11236793 11236879 87 - 1.412 1.359 -0.183
ENSG00000130158 E050 3.2086291 0.0048862054 7.568519e-01 8.418763e-01 19 11236880 11237455 576 - 0.629 0.587 -0.186
ENSG00000130158 E051 28.8092744 0.0061367124 3.989621e-01 5.427181e-01 19 11237456 11237557 102 - 1.476 1.422 -0.184
ENSG00000130158 E052 0.6621601 0.0164619671 6.468798e-01 7.586744e-01 19 11237558 11237640 83 - 0.259 0.182 -0.646
ENSG00000130158 E053 35.6229029 0.0237222987 4.435531e-01 5.851291e-01 19 11237641 11237779 139 - 1.567 1.517 -0.170
ENSG00000130158 E054 2.1475764 0.0108319388 3.604472e-04 1.620639e-03 19 11237780 11238044 265 - 0.770 0.182 -3.231
ENSG00000130158 E055 30.6823492 0.0187133287 2.275818e-02 5.724602e-02 19 11238045 11238115 71 - 1.590 1.395 -0.672
ENSG00000130158 E056 0.1817044 0.0395813264 7.402631e-01   19 11238116 11238186 71 - 0.000 0.100 11.274
ENSG00000130158 E057 40.7573645 0.0032701608 2.830697e-02 6.861916e-02 19 11238187 11238304 118 - 1.668 1.544 -0.425
ENSG00000130158 E058 0.0000000       19 11238305 11238921 617 -      
ENSG00000130158 E059 45.2864857 0.0005614075 2.158038e-02 5.480933e-02 19 11242045 11242207 163 - 1.708 1.594 -0.388
ENSG00000130158 E060 28.6098676 0.0159874345 7.916792e-02 1.581814e-01 19 11243059 11243152 94 - 1.526 1.387 -0.478
ENSG00000130158 E061 25.6754456 0.0151108479 9.484606e-03 2.749885e-02 19 11243258 11243385 128 - 1.531 1.311 -0.761
ENSG00000130158 E062 33.2032230 0.0118945116 1.993760e-03 7.207140e-03 19 11243557 11243710 154 - 1.645 1.414 -0.791
ENSG00000130158 E063 32.3864612 0.0006393684 1.391117e-03 5.277617e-03 19 11243802 11243882 81 - 1.612 1.423 -0.646
ENSG00000130158 E064 42.7441659 0.0005580397 9.303894e-04 3.720674e-03 19 11245563 11245712 150 - 1.722 1.551 -0.580
ENSG00000130158 E065 25.6493424 0.0010787351 5.102474e-02 1.109916e-01 19 11245812 11245878 67 - 1.482 1.354 -0.441
ENSG00000130158 E066 0.1817044 0.0395813264 7.402631e-01   19 11247258 11248065 808 - 0.000 0.100 11.274
ENSG00000130158 E067 29.8020322 0.0128467184 4.612943e-02 1.022772e-01 19 11248066 11248151 86 - 1.556 1.402 -0.532
ENSG00000130158 E068 39.1266258 0.0108715818 7.266762e-02 1.477839e-01 19 11250874 11251086 213 - 1.649 1.528 -0.412
ENSG00000130158 E069 1.8800570 0.1051527830 4.979540e-01 6.344766e-01 19 11251087 11252118 1032 - 0.537 0.405 -0.665
ENSG00000130158 E070 30.7312135 0.0274389688 2.266157e-01 3.583522e-01 19 11252119 11252248 130 - 1.531 1.437 -0.323
ENSG00000130158 E071 1.9071996 0.0885456509 3.571577e-01 5.015637e-01 19 11252249 11252403 155 - 0.537 0.367 -0.880
ENSG00000130158 E072 1.9617168 0.0079926364 5.292897e-02 1.143500e-01 19 11252404 11252481 78 - 0.629 0.310 -1.645
ENSG00000130158 E073 27.1949552 0.0013158613 7.798372e-02 1.562322e-01 19 11252482 11252550 69 - 1.487 1.374 -0.391
ENSG00000130158 E074 7.5820424 0.0030374707 2.804673e-03 9.688797e-03 19 11252551 11252782 232 - 1.108 0.774 -1.258
ENSG00000130158 E075 29.7688831 0.0008751853 4.640713e-05 2.635241e-04 19 11252783 11252881 99 - 1.607 1.354 -0.870
ENSG00000130158 E076 20.7954896 0.0008780205 6.820531e-05 3.715043e-04 19 11252882 11252958 77 - 1.482 1.192 -1.009
ENSG00000130158 E077 13.9604035 0.0016363621 3.301384e-04 1.501362e-03 19 11253639 11253726 88 - 1.330 1.016 -1.120
ENSG00000130158 E078 0.2214452 0.0371998204 7.399565e-01   19 11253727 11254048 322 - 0.000 0.101 11.277
ENSG00000130158 E079 7.1495593 0.0022752001 3.175523e-06 2.362339e-05 19 11262397 11262524 128 - 1.159 0.615 -2.105