ENSG00000129566

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000262715 ENSG00000129566 HEK293_OSMI2_2hA HEK293_TMG_2hB TEP1 protein_coding protein_coding 3.61103 3.227812 2.478533 0.2181837 0.2079704 -0.3797233 0.91259749 0.78208900 0.7136367 0.07369196 0.03073630 -0.1303969 0.26120000 0.24563333 0.29243333 0.04680000 7.140263e-01 6.549781e-06 FALSE TRUE
ENST00000553365 ENSG00000129566 HEK293_OSMI2_2hA HEK293_TMG_2hB TEP1 protein_coding nonsense_mediated_decay 3.61103 3.227812 2.478533 0.2181837 0.2079704 -0.3797233 0.82142472 1.23049506 0.5586482 0.20551165 0.16073996 -1.1253078 0.22239583 0.37576667 0.21783333 -0.15793333 1.870587e-01 6.549781e-06 TRUE TRUE
ENST00000553984 ENSG00000129566 HEK293_OSMI2_2hA HEK293_TMG_2hB TEP1 protein_coding protein_coding 3.61103 3.227812 2.478533 0.2181837 0.2079704 -0.3797233 0.59228934 0.59183276 0.0000000 0.19143009 0.00000000 -5.9112907 0.14967917 0.17963333 0.00000000 -0.17963333 6.549781e-06 6.549781e-06 FALSE FALSE
ENST00000555727 ENSG00000129566 HEK293_OSMI2_2hA HEK293_TMG_2hB TEP1 protein_coding nonsense_mediated_decay 3.61103 3.227812 2.478533 0.2181837 0.2079704 -0.3797233 0.09111788 0.00000000 0.2171048 0.00000000 0.11797096 4.5052865 0.03127500 0.00000000 0.09656667 0.09656667 1.733541e-01 6.549781e-06 TRUE TRUE
ENST00000556549 ENSG00000129566 HEK293_OSMI2_2hA HEK293_TMG_2hB TEP1 protein_coding protein_coding 3.61103 3.227812 2.478533 0.2181837 0.2079704 -0.3797233 0.26120670 0.09155011 0.2125133 0.09155011 0.11582206 1.1316995 0.07737083 0.03276667 0.08313333 0.05036667 6.307654e-01 6.549781e-06 FALSE FALSE
ENST00000557314 ENSG00000129566 HEK293_OSMI2_2hA HEK293_TMG_2hB TEP1 protein_coding nonsense_mediated_decay 3.61103 3.227812 2.478533 0.2181837 0.2079704 -0.3797233 0.50097792 0.34061311 0.3556349 0.01871493 0.10166605 0.0605240 0.13726250 0.10586667 0.14653333 0.04066667 8.133017e-01 6.549781e-06 FALSE TRUE
MSTRG.9150.5 ENSG00000129566 HEK293_OSMI2_2hA HEK293_TMG_2hB TEP1 protein_coding   3.61103 3.227812 2.478533 0.2181837 0.2079704 -0.3797233 0.25814829 0.15361756 0.2609661 0.06448978 0.07130081 0.7277850 0.07620000 0.04750000 0.10203333 0.05453333 3.201172e-01 6.549781e-06 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000129566 E001 80.0629800 0.014669119 5.097374e-05 2.866972e-04 14 20365667 20367101 1435 - 1.719 2.008 0.972
ENSG00000129566 E002 2.4627184 0.006129695 8.136507e-03 2.413133e-02 14 20367102 20367103 2 - 0.223 0.680 2.498
ENSG00000129566 E003 20.2955168 0.000954564 7.747745e-07 6.592055e-06 14 20367104 20367630 527 - 1.044 1.454 1.449
ENSG00000129566 E004 10.3686830 0.020336919 2.409947e-03 8.491720e-03 14 20367631 20367907 277 - 0.804 1.188 1.428
ENSG00000129566 E005 20.0419927 0.001073544 1.165131e-01 2.149736e-01 14 20367908 20368370 463 - 1.241 1.370 0.448
ENSG00000129566 E006 8.6118711 0.002298291 3.313618e-01 4.749639e-01 14 20368371 20368393 23 - 0.906 1.020 0.427
ENSG00000129566 E007 18.9205489 0.001055505 8.096231e-04 3.292985e-03 14 20368394 20368559 166 - 1.105 1.387 0.994
ENSG00000129566 E008 13.2330056 0.001425778 2.156336e-03 7.708816e-03 14 20368798 20368880 83 - 0.957 1.256 1.082
ENSG00000129566 E009 9.0731823 0.001991844 7.677326e-02 1.543277e-01 14 20368881 20368902 22 - 0.868 1.070 0.753
ENSG00000129566 E010 13.6201785 0.002001413 3.301770e-01 4.737600e-01 14 20369344 20369366 23 - 1.094 1.191 0.350
ENSG00000129566 E011 27.1602397 0.003334719 4.967657e-03 1.583930e-02 14 20369367 20369554 188 - 1.311 1.522 0.728
ENSG00000129566 E012 12.5470763 0.025100437 1.115181e-01 2.077832e-01 14 20369555 20369576 22 - 1.002 1.207 0.739
ENSG00000129566 E013 21.1037558 0.023087289 3.459643e-01 4.901062e-01 14 20369674 20369779 106 - 1.274 1.386 0.390
ENSG00000129566 E014 17.3100309 0.001141462 9.607988e-02 1.844927e-01 14 20371218 20371314 97 - 1.169 1.313 0.509
ENSG00000129566 E015 9.0066041 0.002000052 7.997491e-01 8.722816e-01 14 20371489 20371517 29 - 0.973 1.007 0.127
ENSG00000129566 E016 14.5619012 0.001264337 7.013869e-01 8.005810e-01 14 20371518 20371607 90 - 1.159 1.200 0.146
ENSG00000129566 E017 9.6288356 0.005747863 7.361477e-01 8.267191e-01 14 20371608 20371632 25 - 1.003 1.045 0.156
ENSG00000129566 E018 10.5426273 0.001641141 1.155521e-01 2.136395e-01 14 20372733 20372857 125 - 0.957 1.124 0.613
ENSG00000129566 E019 17.7296173 0.001022586 4.486106e-01 5.898908e-01 14 20373011 20373147 137 - 1.224 1.293 0.241
ENSG00000129566 E020 13.5495364 0.004386935 1.372530e-01 2.442481e-01 14 20373270 20373402 133 - 1.224 1.093 -0.470
ENSG00000129566 E021 11.0438880 0.001680313 6.621259e-01 7.704786e-01 14 20373507 20373583 77 - 1.094 1.058 -0.130
ENSG00000129566 E022 11.5318073 0.001930371 2.058050e-01 3.334181e-01 14 20373678 20373783 106 - 1.149 1.033 -0.418
ENSG00000129566 E023 9.1473637 0.004331047 2.685271e-02 6.568577e-02 14 20373784 20373810 27 - 1.116 0.883 -0.865
ENSG00000129566 E024 13.2353593 0.001386571 5.946474e-02 1.257158e-01 14 20374429 20374536 108 - 1.233 1.069 -0.585
ENSG00000129566 E025 15.3704948 0.028562322 6.072479e-01 7.272717e-01 14 20375755 20375868 114 - 1.233 1.191 -0.150
ENSG00000129566 E026 15.6845952 0.013386871 6.738428e-01 7.794259e-01 14 20376104 20376264 161 - 1.188 1.241 0.186
ENSG00000129566 E027 8.5542229 0.001962826 8.900790e-01 9.337689e-01 14 20377280 20377358 79 - 0.957 0.979 0.083
ENSG00000129566 E028 8.7777470 0.001922029 4.906283e-01 6.279708e-01 14 20377359 20377424 66 - 1.017 0.949 -0.251
ENSG00000129566 E029 9.9914792 0.001799071 2.345502e-01 3.678136e-01 14 20377425 20377492 68 - 1.094 0.979 -0.420
ENSG00000129566 E030 10.2922172 0.001693589 6.639680e-01 7.718914e-01 14 20377600 20377662 63 - 1.069 1.033 -0.134
ENSG00000129566 E031 8.4871385 0.023107199 7.558971e-01 8.411007e-01 14 20377663 20377753 91 - 0.957 1.003 0.172
ENSG00000129566 E032 12.2055691 0.001457617 7.217422e-01 8.160029e-01 14 20378024 20378236 213 - 1.094 1.134 0.147
ENSG00000129566 E033 11.5456732 0.001535697 7.851212e-01 8.622445e-01 14 20378380 20378535 156 - 1.070 1.103 0.122
ENSG00000129566 E034 8.0256788 0.005057275 2.397604e-01 3.738396e-01 14 20378754 20378853 100 - 0.847 0.994 0.554
ENSG00000129566 E035 12.4024226 0.014923772 5.882662e-01 7.114602e-01 14 20378981 20379105 125 - 1.070 1.139 0.249
ENSG00000129566 E036 11.4100811 0.001856059 4.992339e-01 6.355560e-01 14 20379930 20380053 124 - 1.117 1.058 -0.213
ENSG00000129566 E037 15.8691238 0.001463652 2.769594e-01 4.164546e-01 14 20380235 20380475 241 - 1.258 1.173 -0.299
ENSG00000129566 E038 9.3096997 0.002735925 1.099819e-01 2.055160e-01 14 20380931 20381045 115 - 1.082 0.918 -0.607
ENSG00000129566 E039 9.6290776 0.001817872 2.532772e-02 6.254659e-02 14 20381313 20381401 89 - 1.128 0.900 -0.837
ENSG00000129566 E040 3.8956978 0.065652821 1.837359e-01 3.058960e-01 14 20381553 20381686 134 - 0.804 0.583 -0.925
ENSG00000129566 E041 11.7948781 0.096145757 4.250933e-02 9.564676e-02 14 20381913 20382063 151 - 1.257 0.934 -1.170
ENSG00000129566 E042 11.6925471 0.011528066 3.023437e-01 4.442091e-01 14 20382224 20382356 133 - 1.149 1.047 -0.366
ENSG00000129566 E043 7.5785496 0.002651199 6.339450e-01 7.485321e-01 14 20382623 20382694 72 - 0.887 0.949 0.235
ENSG00000129566 E044 4.1203732 0.020163414 3.309166e-01 4.744908e-01 14 20382695 20382715 21 - 0.604 0.760 0.655
ENSG00000129566 E045 9.1244259 0.029967152 2.610001e-01 3.986044e-01 14 20383174 20383353 180 - 0.887 1.053 0.618
ENSG00000129566 E046 8.8543211 0.022745394 6.205861e-01 7.377197e-01 14 20383488 20383644 157 - 1.003 0.954 -0.180
ENSG00000129566 E047 9.0410359 0.001932193 6.722984e-01 7.783026e-01 14 20383743 20383918 176 - 1.017 0.979 -0.140
ENSG00000129566 E048 9.1685278 0.007636140 8.183135e-01 8.851759e-01 14 20384038 20384232 195 - 0.988 1.020 0.117
ENSG00000129566 E049 6.6450498 0.004163114 3.921567e-01 5.360963e-01 14 20384391 20384508 118 - 0.923 0.825 -0.376
ENSG00000129566 E050 6.4518164 0.010365997 8.250290e-01 8.897708e-01 14 20384600 20384713 114 - 0.868 0.847 -0.082
ENSG00000129566 E051 7.2373041 0.003126086 9.684912e-01 9.842984e-01 14 20384985 20385109 125 - 0.906 0.917 0.043
ENSG00000129566 E052 8.6987316 0.003027343 4.932279e-01 6.302606e-01 14 20386075 20386195 121 - 1.017 0.949 -0.251
ENSG00000129566 E053 9.5936137 0.001910577 1.829994e-01 3.049504e-01 14 20386447 20386623 177 - 1.082 0.949 -0.487
ENSG00000129566 E054 9.8600137 0.001741713 2.717423e-02 6.634888e-02 14 20387905 20388063 159 - 1.138 0.917 -0.812
ENSG00000129566 E055 6.8181236 0.003073097 1.085263e-01 2.033789e-01 14 20389238 20389297 60 - 0.988 0.804 -0.701
ENSG00000129566 E056 7.7875533 0.002213752 1.583560e-01 2.729389e-01 14 20389610 20389740 131 - 1.017 0.864 -0.573
ENSG00000129566 E057 5.7227347 0.003014586 4.670133e-01 6.065323e-01 14 20390681 20390758 78 - 0.868 0.782 -0.335
ENSG00000129566 E058 8.0843589 0.002177383 1.290881e-03 4.945272e-03 14 20390938 20391096 159 - 1.117 0.759 -1.350
ENSG00000129566 E059 8.9573932 0.008619511 2.279401e-02 5.731464e-02 14 20391599 20391767 169 - 1.117 0.865 -0.934
ENSG00000129566 E060 9.8569818 0.001759813 2.826934e-03 9.754909e-03 14 20395450 20395627 178 - 1.169 0.864 -1.122
ENSG00000129566 E061 6.5291981 0.006036367 1.845130e-01 3.068716e-01 14 20395859 20395949 91 - 0.940 0.783 -0.607
ENSG00000129566 E062 6.4495896 0.003861651 1.797267e-01 3.008180e-01 14 20396621 20396730 110 - 0.940 0.782 -0.609
ENSG00000129566 E063 0.3634088 0.437780106 3.292791e-01   14 20400667 20400983 317 - 0.000 0.214 9.870
ENSG00000129566 E064 8.9440878 0.013155150 8.221563e-02 1.629987e-01 14 20400984 20401141 158 - 1.082 0.885 -0.732
ENSG00000129566 E065 7.6124813 0.015222285 3.253992e-02 7.688151e-02 14 20401457 20401581 125 - 1.044 0.784 -0.984
ENSG00000129566 E066 5.2091297 0.080223108 4.270830e-01 5.699224e-01 14 20403377 20403448 72 - 0.827 0.721 -0.420
ENSG00000129566 E067 0.9254501 0.013322476 3.636829e-01 5.081021e-01 14 20403449 20403722 274 - 0.370 0.212 -1.089
ENSG00000129566 E068 6.5854114 0.043786414 2.652774e-01 4.033184e-01 14 20403723 20403884 162 - 0.940 0.790 -0.578
ENSG00000129566 E069 6.3953051 0.046183766 1.355019e-02 3.719694e-02 14 20404611 20404772 162 - 1.030 0.655 -1.467
ENSG00000129566 E070 8.1905448 0.047706496 6.556720e-03 2.007290e-02 14 20405451 20405585 135 - 1.137 0.737 -1.514
ENSG00000129566 E071 9.6808130 0.033676438 2.323548e-02 5.823688e-02 14 20406233 20406400 168 - 1.168 0.865 -1.117
ENSG00000129566 E072 5.4894738 0.123443231 6.217293e-02 1.303015e-01 14 20407873 20407941 69 - 0.987 0.587 -1.606
ENSG00000129566 E073 12.7174346 0.004162618 3.911359e-05 2.259767e-04 14 20407942 20408463 522 - 1.311 0.917 -1.422
ENSG00000129566 E074 0.9567850 0.171208976 4.246557e-01 5.676067e-01 14 20413371 20413404 34 - 0.370 0.213 -1.083
ENSG00000129566 E075 1.7370624 0.068755844 3.542862e-01 4.985623e-01 14 20413405 20413501 97 - 0.525 0.354 -0.899