• ENSG00000129003
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000129003

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000249837 ENSG00000129003 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13C protein_coding protein_coding 2.486039 1.121667 3.724543 0.1722041 0.2957142 1.722482 1.1384174 0.12742721 1.8631355 0.03591194 0.12634762 3.7687157 0.35752083 0.13026667 0.5056333 0.37536667 1.047061e-03 1.791309e-11 FALSE TRUE
ENST00000559119 ENSG00000129003 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13C protein_coding retained_intron 2.486039 1.121667 3.724543 0.1722041 0.2957142 1.722482 0.3699123 0.17093509 0.7541449 0.04747173 0.33573128 2.0783740 0.14157083 0.14640000 0.1924000 0.04600000 9.200020e-01 1.791309e-11   FALSE
ENST00000560637 ENSG00000129003 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13C protein_coding retained_intron 2.486039 1.121667 3.724543 0.1722041 0.2957142 1.722482 0.5018723 0.68856291 0.3772014 0.14821291 0.05240617 -0.8513059 0.31367917 0.60006667 0.1013000 -0.49876667 1.791309e-11 1.791309e-11 FALSE FALSE
ENST00000649766 ENSG00000129003 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13C protein_coding protein_coding 2.486039 1.121667 3.724543 0.1722041 0.2957142 1.722482 0.1616630 0.07097315 0.2507482 0.03968387 0.01164838 1.6871416 0.06467083 0.05436667 0.0685000 0.01413333 9.314009e-01 1.791309e-11 FALSE TRUE
ENST00000650094 ENSG00000129003 HEK293_OSMI2_2hA HEK293_TMG_2hB VPS13C protein_coding nonsense_mediated_decay 2.486039 1.121667 3.724543 0.1722041 0.2957142 1.722482 0.2250575 0.06268858 0.3598613 0.03561542 0.06254239 2.3471835 0.09428750 0.06806667 0.0994000 0.03133333 7.028157e-01 1.791309e-11 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

Rows: 1-10 / 102

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_2hBColumn filter
HEK293_OSMI2_2hAColumn filter
log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hBColumn filter
ENSG00000129003 E001 0.2965864 0.278762682 1.618494e-02   15 61852389 61852403 15 - 0.000 0.418 12.561
ENSG00000129003 E002 52.6492751 0.056162840 3.227268e-12 7.286334e-11 15 61852404 61853451 1048 - 1.315 2.146 2.822
ENSG00000129003 E003 59.9179571 0.000444495 9.991177e-10 1.481875e-08 15 61853452 61854412 961 - 1.580 1.898 1.078
ENSG00000129003 E004 20.6781000 0.001042566 1.318428e-01 2.366827e-01 15 61854413 61854558 146 - 1.181 1.321 0.494
ENSG00000129003 E005 17.5790503 0.001312078 3.087837e-01 4.510579e-01 15 61854871 61854954 84 - 1.122 1.225 0.366
ENSG00000129003 E006 21.0101473 0.003212919 9.581767e-02 1.841123e-01 15 61856286 61856409 124 - 1.181 1.338 0.554
ENSG00000129003 E007 3.7578738 0.007927906 1.299684e-02 3.590376e-02 15 61856410 61856793 384 - 0.483 0.883 1.703
ENSG00000129003 E008 16.4023564 0.005677618 6.045232e-01 7.250398e-01 15 61863440 61863528 89 - 1.101 1.155 0.195
ENSG00000129003 E009 3.9402637 0.004704956 3.774773e-01 5.218060e-01 15 61863529 61864305 777 - 0.609 0.425 -0.882
ENSG00000129003 E010 1.6638853 0.008133366 6.430770e-01 7.556975e-01 15 61864306 61864640 335 - 0.332 0.425 0.533
ENSG00000129003 E011 2.4722503 0.009481565 5.370976e-01 6.687405e-01 15 61864641 61864820 180 - 0.425 0.543 0.588
ENSG00000129003 E012 2.8067192 0.005408663 3.950145e-02 9.011110e-02 15 61864821 61865557 737 - 0.534 0.000 -16.463
ENSG00000129003 E013 8.9835042 0.002946360 2.604136e-01 3.979428e-01 15 61865558 61867743 2186 - 0.897 0.712 -0.730
ENSG00000129003 E014 1.7735705 0.007901731 7.336064e-01 8.247945e-01 15 61867744 61867947 204 - 0.357 0.425 0.380
ENSG00000129003 E015 2.4179501 0.174509726 4.965620e-01 6.331924e-01 15 61867948 61868658 711 - 0.463 0.265 -1.180
ENSG00000129003 E016 14.8678379 0.001274442 9.513021e-01 9.735445e-01 15 61868659 61868773 115 - 1.069 1.072 0.011
ENSG00000129003 E017 16.5568305 0.001075363 9.132370e-01 9.490193e-01 15 61869500 61869623 124 - 1.118 1.101 -0.059
ENSG00000129003 E018 13.7144474 0.024063654 9.626255e-01 9.803983e-01 15 61871989 61872034 46 - 1.039 1.041 0.007
ENSG00000129003 E019 20.4646856 0.009981633 9.663493e-01 9.828735e-01 15 61873246 61873409 164 - 1.202 1.203 0.003
ENSG00000129003 E020 11.1907373 0.010881258 6.545721e-01 7.647277e-01 15 61874876 61874951 76 - 0.950 1.006 0.210
ENSG00000129003 E021 11.7142194 0.001568012 1.132734e-01 2.102966e-01 15 61875732 61875786 55 - 0.943 1.129 0.679
ENSG00000129003 E022 10.6885473 0.007434929 1.136823e-01 2.108947e-01 15 61875787 61875845 59 - 0.904 1.101 0.729
ENSG00000129003 E023 13.1860172 0.001405101 8.184694e-02 1.624565e-01 15 61876973 61877054 82 - 0.986 1.180 0.703
ENSG00000129003 E024 0.0000000       15 61877055 61877086 32 -      
ENSG00000129003 E025 16.7737664 0.019633204 2.683505e-01 4.068031e-01 15 61878607 61878746 140 - 1.091 1.228 0.488
ENSG00000129003 E026 14.6049153 0.001246321 8.878819e-01 9.323226e-01 15 61880609 61880722 114 - 1.059 1.072 0.046
ENSG00000129003 E027 14.2073293 0.012700895 5.202868e-01 6.542593e-01 15 61880843 61880954 112 - 1.064 0.969 -0.349
ENSG00000129003 E028 9.4188329 0.013580136 6.780459e-01 7.826009e-01 15 61881563 61881632 70 - 0.904 0.833 -0.272
ENSG00000129003 E029 7.7549582 0.047464027 5.978074e-01 7.195178e-01 15 61881747 61881828 82 - 0.804 0.886 0.316
ENSG00000129003 E030 11.6287222 0.073065615 5.373437e-01 6.689238e-01 15 61882596 61882736 141 - 0.957 1.046 0.328
ENSG00000129003 E031 13.3777435 0.001939698 8.681127e-01 9.191687e-01 15 61884128 61884269 142 - 1.024 1.040 0.059
ENSG00000129003 E032 18.6785185 0.001057794 1.929881e-01 3.175243e-01 15 61890165 61890400 236 - 1.138 1.266 0.452
ENSG00000129003 E033 0.1472490 0.042454503 8.379449e-01   15 61906643 61907263 621 - 0.052 0.000 -13.043
ENSG00000129003 E034 10.9843039 0.001527004 6.620648e-02 1.370583e-01 15 61907264 61907390 127 - 0.911 1.129 0.803
ENSG00000129003 E035 11.7521960 0.001837744 2.275475e-02 5.724175e-02 15 61908992 61909125 134 - 0.917 1.180 0.959
ENSG00000129003 E036 10.7737720 0.004010483 7.907429e-01 8.661787e-01 15 61910177 61910305 129 - 0.937 0.969 0.119
ENSG00000129003 E037 11.6345633 0.002427868 7.108292e-01 8.079221e-01 15 61911840 61912004 165 - 0.962 1.006 0.163
ENSG00000129003 E038 8.0746471 0.021643250 1.277025e-01 2.309581e-01 15 61913311 61913415 105 - 0.786 1.008 0.848
ENSG00000129003 E039 15.7034883 0.001170146 4.375649e-01 5.795199e-01 15 61915633 61916022 390 - 1.105 1.006 -0.361
ENSG00000129003 E040 14.9324075 0.022110845 6.251591e-01 7.413370e-01 15 61917341 61917635 295 - 1.078 1.010 -0.248
ENSG00000129003 E041 6.9898443 0.074934612 9.878444e-01 9.964560e-01 15 61918136 61918257 122 - 0.785 0.778 -0.025
ENSG00000129003 E042 10.9539412 0.015840829 8.751593e-01 9.237953e-01 15 61919289 61919449 161 - 0.956 0.929 -0.102
ENSG00000129003 E043 13.5664244 0.001326292 1.559757e-02 4.184124e-02 15 61920067 61920331 265 - 1.078 0.712 -1.401
ENSG00000129003 E044 10.2311757 0.001658391 1.252973e-01 2.275574e-01 15 61920498 61920647 150 - 0.956 0.712 -0.952
ENSG00000129003 E045 7.6470621 0.002167019 2.280111e-01 3.600568e-01 15 61921947 61922033 87 - 0.845 0.636 -0.852
ENSG00000129003 E046 13.6556229 0.001290851 4.222468e-02 9.513623e-02 15 61922397 61922762 366 - 1.073 0.777 -1.121
ENSG00000129003 E047 4.5147386 0.026305278 2.737938e-01 4.128908e-01 15 61925456 61925548 93 - 0.660 0.425 -1.104
ENSG00000129003 E048 10.8880409 0.002162717 8.708857e-03 2.555793e-02 15 61927091 61927320 230 - 0.997 0.543 -1.841
ENSG00000129003 E049 13.7116061 0.001317283 3.531741e-01 4.974149e-01 15 61929501 61929748 248 - 1.054 0.928 -0.466
ENSG00000129003 E050 12.7760289 0.001364327 8.882835e-03 2.598639e-02 15 61931090 61931259 170 - 1.054 0.636 -1.637
ENSG00000129003 E051 8.7825091 0.013243167 1.891581e-03 6.888382e-03 15 61934219 61934331 113 - 0.924 0.263 -3.153
ENSG00000129003 E052 7.1677247 0.002872318 1.320987e-01 2.370284e-01 15 61936597 61936750 154 - 0.820 0.543 -1.170
ENSG00000129003 E053 6.4201164 0.002851785 4.659139e-01 6.055030e-01 15 61940647 61940794 148 - 0.767 0.636 -0.545
ENSG00000129003 E054 10.4727975 0.001573620 2.488123e-03 8.728380e-03 15 61941763 61942067 305 - 0.986 0.425 -2.384
ENSG00000129003 E055 8.0422757 0.002103753 2.652240e-03 9.229420e-03 15 61945715 61945882 168 - 0.890 0.263 -3.025
ENSG00000129003 E056 7.4229770 0.002249865 3.158297e-04 1.444055e-03 15 61946307 61946410 104 - 0.868 0.000 -17.358
ENSG00000129003 E057 6.9986196 0.002295291 6.741334e-03 2.055173e-02 15 61947193 61947309 117 - 0.837 0.263 -2.821
ENSG00000129003 E058 6.9387934 0.002636010 4.972382e-04 2.149563e-03 15 61949443 61949605 163 - 0.845 0.000 -17.300
ENSG00000129003 E059 5.5496213 0.003049724 1.194958e-01 2.192278e-01 15 61950358 61950417 60 - 0.737 0.425 -1.426
ENSG00000129003 E060 5.1529387 0.003206903 4.295180e-01 5.722407e-01 15 61950945 61951024 80 - 0.695 0.543 -0.666
ENSG00000129003 E061 2.9342852 0.006346032 7.264146e-01 8.194328e-01 15 61951824 61951859 36 - 0.501 0.425 -0.384
ENSG00000129003 E062 6.5546930 0.002543032 4.317884e-01 5.743041e-01 15 61951860 61951980 121 - 0.776 0.636 -0.582
ENSG00000129003 E063 4.3932984 0.003892731 6.410299e-01 7.541385e-01 15 61954421 61954466 46 - 0.635 0.543 -0.412
ENSG00000129003 E064 6.6278570 0.002882487 8.836707e-01 9.295942e-01 15 61954467 61954554 88 - 0.757 0.777 0.079
ENSG00000129003 E065 5.6378763 0.045032968 1.598695e-01 2.749370e-01 15 61958608 61958716 109 - 0.738 0.427 -1.419
ENSG00000129003 E066 6.4450980 0.002576229 1.148718e-02 3.232302e-02 15 61959448 61959595 148 - 0.803 0.263 -2.689
ENSG00000129003 E067 9.9318476 0.001737465 4.082149e-03 1.337306e-02 15 61961589 61961893 305 - 0.962 0.425 -2.297
ENSG00000129003 E068 6.3955501 0.026685378 2.466167e-01 3.819867e-01 15 61962371 61962538 168 - 0.776 0.544 -0.991
ENSG00000129003 E069 5.0670893 0.003133502 3.747614e-02 8.635895e-02 15 61962749 61962852 104 - 0.717 0.263 -2.341
ENSG00000129003 E070 6.8857122 0.002457532 4.369540e-02 9.782817e-02 15 61963835 61963951 117 - 0.820 0.425 -1.756
ENSG00000129003 E071 6.8386852 0.002409245 7.697331e-03 2.301945e-02 15 61964699 61964861 163 - 0.829 0.263 -2.789
ENSG00000129003 E072 4.9115349 0.012024597 4.596637e-02 1.019695e-01 15 61966083 61966142 60 - 0.706 0.263 -2.297
ENSG00000129003 E073 4.8750032 0.022129253 5.413956e-03 1.705308e-02 15 61967368 61967447 80 - 0.717 0.000 -16.969
ENSG00000129003 E074 6.5139982 0.002643645 7.832506e-04 3.199665e-03 15 61969299 61969452 154 - 0.820 0.000 -17.240
ENSG00000129003 E075 8.1762877 0.006216317 1.746756e-04 8.556151e-04 15 61972625 61972764 140 - 0.904 0.000 -17.443
ENSG00000129003 E076 6.0933556 0.007621721 1.379631e-03 5.239867e-03 15 61973454 61973532 79 - 0.795 0.000 -17.172
ENSG00000129003 E077 6.3962727 0.008434481 1.053439e-03 4.144259e-03 15 61974288 61974417 130 - 0.812 0.000 -17.216
ENSG00000129003 E078 6.2404909 0.002914317 1.071072e-03 4.204720e-03 15 61977082 61977199 118 - 0.803 0.000 -17.197
ENSG00000129003 E079 6.0762900 0.002617739 1.233966e-03 4.756278e-03 15 61978626 61978749 124 - 0.794 0.000 -17.175
ENSG00000129003 E080 6.3644453 0.002562106 9.094512e-04 3.647103e-03 15 61981342 61981478 137 - 0.812 0.000 -17.218
ENSG00000129003 E081 5.1056973 0.003341178 1.653081e-01 2.820778e-01 15 61982459 61982573 115 - 0.706 0.425 -1.297
ENSG00000129003 E082 0.0000000       15 61983713 61983819 107 -      
ENSG00000129003 E083 7.1782477 0.002308224 3.466810e-02 8.101353e-02 15 61983820 61984012 193 - 0.837 0.425 -1.820
ENSG00000129003 E084 6.2190451 0.055232961 2.983947e-03 1.021595e-02 15 61984857 61984999 143 - 0.803 0.000 -17.166
ENSG00000129003 E085 4.4370676 0.027146218 8.881894e-03 2.598446e-02 15 61991000 61991094 95 - 0.684 0.000 -16.882
ENSG00000129003 E086 5.4766848 0.002938708 2.278875e-03 8.086877e-03 15 61991673 61991802 130 - 0.757 0.000 -17.080
ENSG00000129003 E087 3.1160928 0.004915683 2.848571e-02 6.898378e-02 15 62000564 62000626 63 - 0.566 0.000 -16.557
ENSG00000129003 E088 6.8964351 0.002793842 4.394660e-02 9.828763e-02 15 62007308 62007479 172 - 0.820 0.425 -1.756
ENSG00000129003 E089 5.0797747 0.003126471 3.754649e-02 8.649082e-02 15 62008655 62008761 107 - 0.717 0.263 -2.341
ENSG00000129003 E090 6.6653998 0.002378897 6.698390e-04 2.788008e-03 15 62010472 62010599 128 - 0.829 0.000 -17.260
ENSG00000129003 E091 5.6282002 0.002876561 1.955272e-03 7.087730e-03 15 62012107 62012164 58 - 0.767 0.000 -17.105
ENSG00000129003 E092 5.1801104 0.004448658 3.167360e-03 1.075989e-02 15 62013039 62013119 81 - 0.737 0.000 -17.029
ENSG00000129003 E093 4.2879697 0.004260599 7.952415e-03 2.365754e-02 15 62013933 62013992 60 - 0.672 0.000 -16.857
ENSG00000129003 E094 3.6945935 0.004470705 1.492802e-02 4.032551e-02 15 62020479 62020538 60 - 0.622 0.000 -16.720
ENSG00000129003 E095 4.8822764 0.003387560 4.271207e-02 9.601740e-02 15 62023411 62023520 110 - 0.706 0.263 -2.297
ENSG00000129003 E096 0.0000000       15 62023780 62023845 66 -      
ENSG00000129003 E097 0.0000000       15 62028358 62028420 63 -      
ENSG00000129003 E098 3.5706391 0.015461063 1.922427e-02 4.982267e-02 15 62033441 62033542 102 - 0.609 0.000 -16.682
ENSG00000129003 E099 3.7102857 0.004645224 1.203295e-01 2.204563e-01 15 62034957 62035052 96 - 0.609 0.262 -1.882
ENSG00000129003 E100 2.1173874 0.008122705 4.748794e-01 6.136731e-01 15 62041324 62041366 43 - 0.425 0.263 -0.998
ENSG00000129003 E101 2.2625601 0.006318255 4.195845e-01 5.628418e-01 15 62044212 62044255 44 - 0.445 0.263 -1.104
ENSG00000129003 E102 2.4527973 0.050407764 9.509938e-01 9.733485e-01 15 62060275 62060473 199 - 0.445 0.425 -0.105