ENSG00000127914

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356239 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding protein_coding 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.98994616 0.00000000 1.5499917 0.00000000 0.77502321 7.2853946 0.107354167 0.00000000 0.20483333 0.20483333 2.878335e-01 2.832416e-10 FALSE TRUE
ENST00000394534 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding protein_coding 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.39950658 0.38989999 0.5193834 0.19965184 0.51938338 0.4046737 0.075625000 0.14613333 0.06770000 -0.07843333 5.108729e-01 2.832416e-10 FALSE TRUE
ENST00000486313 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding protein_coding 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.31204837 0.84271631 0.0000000 0.19179223 0.00000000 -6.4139939 0.104791667 0.34660000 0.00000000 -0.34660000 2.832416e-10 2.832416e-10 FALSE TRUE
ENST00000487258 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding retained_intron 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.58795265 0.73499239 0.2646130 0.19278764 0.26461298 -1.4398258 0.137150000 0.29000000 0.03450000 -0.25550000 5.599392e-02 2.832416e-10 FALSE TRUE
ENST00000487692 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding retained_intron 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.19382996 0.00000000 0.4292522 0.00000000 0.12382315 5.4569776 0.026316667 0.00000000 0.06206667 0.06206667 7.919073e-03 2.832416e-10 TRUE TRUE
ENST00000680365 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding nonsense_mediated_decay 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.97519061 0.13364461 0.7868243 0.13364461 0.41021954 2.4717577 0.161566667 0.06110000 0.11343333 0.05233333 7.178805e-01 2.832416e-10 TRUE TRUE
ENST00000680513 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding protein_coding 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.71300322 0.06399843 0.9864614 0.06399843 0.31185314 3.7512472 0.081487500 0.02303333 0.14106667 0.11803333 1.541112e-01 2.832416e-10 FALSE TRUE
ENST00000680766 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding protein_coding 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.07569879 0.00000000 0.3338864 0.00000000 0.33388644 5.1038603 0.009633333 0.00000000 0.05296667 0.05296667 1.000000e+00 2.832416e-10 FALSE TRUE
ENST00000681412 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding protein_coding 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.31341234 0.17792484 0.1631720 0.03056075 0.08747657 -0.1179503 0.057379167 0.07106667 0.02433333 -0.04673333 3.049397e-01 2.832416e-10 FALSE TRUE
ENST00000681722 ENSG00000127914 HEK293_OSMI2_2hA HEK293_TMG_2hB AKAP9 protein_coding protein_coding 6.261115 2.500969 7.146848 0.1719588 0.4248989 1.51108 0.30007409 0.00000000 0.4710302 0.00000000 0.23612829 5.5880555 0.034154167 0.00000000 0.06220000 0.06220000 3.388608e-01 2.832416e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000127914 E001 0.0000000       7 91940840 91940859 20 +      
ENSG00000127914 E002 0.0000000       7 91940860 91940861 2 +      
ENSG00000127914 E003 0.0000000       7 91940862 91940869 8 +      
ENSG00000127914 E004 0.1472490 0.0432591897 1.000000e+00   7 91940870 91940874 5 + 0.055 0.000 -7.858
ENSG00000127914 E005 0.7362451 1.0030198140 1.000000e+00 1.000000e+00 7 91940875 91940877 3 + 0.225 0.000 -11.262
ENSG00000127914 E006 2.6508236 0.0339539632 3.198949e-02 7.583924e-02 7 91940878 91940915 38 + 0.537 0.000 -13.928
ENSG00000127914 E007 3.2462762 0.0065695834 1.285923e-02 3.558647e-02 7 91940916 91940925 10 + 0.601 0.000 -14.214
ENSG00000127914 E008 6.7257647 0.0024976784 1.922990e-02 4.983375e-02 7 91940926 91941005 80 + 0.836 0.408 -1.909
ENSG00000127914 E009 8.9603259 0.0018475455 2.276433e-03 8.079575e-03 7 91941006 91941078 73 + 0.949 0.408 -2.340
ENSG00000127914 E010 6.0638320 0.0346714754 8.688262e-04 3.505028e-03 7 91941079 91941099 21 + 0.818 0.000 -14.763
ENSG00000127914 E011 8.2928672 0.0020684723 5.199929e-04 2.234724e-03 7 91941100 91941147 48 + 0.928 0.250 -3.264
ENSG00000127914 E012 0.0000000       7 91970473 91970508 36 +      
ENSG00000127914 E013 18.7496142 0.0010503177 1.961739e-04 9.475437e-04 7 91973711 91973968 258 + 1.232 0.754 -1.780
ENSG00000127914 E014 0.0000000       7 91979436 91979574 139 +      
ENSG00000127914 E015 8.4509212 0.0432462702 4.219369e-02 9.508109e-02 7 91980289 91980333 45 + 0.914 0.525 -1.615
ENSG00000127914 E016 0.2987644 0.0274424043 1.000000e+00   7 91980873 91980958 86 + 0.105 0.000 -11.237
ENSG00000127914 E017 10.2308224 0.0421521021 1.395517e-02 3.811986e-02 7 91992158 91992211 54 + 0.993 0.525 -1.910
ENSG00000127914 E018 20.3536837 0.0012851432 5.402734e-03 1.702283e-02 7 91992885 91993055 171 + 1.252 0.944 -1.114
ENSG00000127914 E019 16.3839642 0.0011515906 4.326303e-03 1.405846e-02 7 91994621 91994776 156 + 1.168 0.810 -1.333
ENSG00000127914 E020 13.9744372 0.0012781365 1.423730e-05 9.125773e-05 7 91995603 91995800 198 + 1.131 0.408 -3.006
ENSG00000127914 E021 0.0000000       7 91995801 91996052 252 +      
ENSG00000127914 E022 126.0689961 0.0002695453 2.143713e-22 1.785143e-20 7 92000848 92003235 2388 + 2.041 1.528 -1.734
ENSG00000127914 E023 9.2460873 0.0303584415 1.341316e-01 2.399014e-01 7 92012429 92012500 72 + 0.936 0.691 -0.963
ENSG00000127914 E024 14.9092077 0.0075596924 1.745616e-02 4.594696e-02 7 92012501 92012642 142 + 1.127 0.810 -1.181
ENSG00000127914 E025 10.4005733 0.0015980099 9.693241e-02 1.858039e-01 7 92014249 92014328 80 + 0.981 0.754 -0.875
ENSG00000127914 E026 17.0332936 0.0073702876 4.016119e-03 1.318662e-02 7 92016129 92016267 139 + 1.188 0.810 -1.404
ENSG00000127914 E027 17.5139925 0.0262650009 9.926309e-04 3.932968e-03 7 92017017 92017102 86 + 1.211 0.690 -1.971
ENSG00000127914 E028 19.7574227 0.0140935265 2.809655e-03 9.703413e-03 7 92022238 92022352 115 + 1.252 0.859 -1.441
ENSG00000127914 E029 15.7131381 0.0200192589 2.225924e-03 7.923612e-03 7 92022814 92023009 196 + 1.165 0.689 -1.810
ENSG00000127914 E030 12.0419764 0.0014699801 9.321396e-06 6.239085e-05 7 92029895 92029991 97 + 1.075 0.250 -3.804
ENSG00000127914 E031 13.3722631 0.0019321842 2.734463e-05 1.642264e-04 7 92031512 92031604 93 + 1.113 0.408 -2.942
ENSG00000127914 E032 26.4541889 0.0031598854 8.574523e-05 4.551337e-04 7 92038419 92038772 354 + 1.372 0.944 -1.534
ENSG00000127914 E033 9.6293789 0.0020375355 1.683213e-01 2.860138e-01 7 92040674 92040703 30 + 0.942 0.754 -0.730
ENSG00000127914 E034 21.8079952 0.0008828658 5.432565e-05 3.033612e-04 7 92040704 92040898 195 + 1.296 0.810 -1.783
ENSG00000127914 E035 1.9399494 0.0155918278 7.530263e-02 1.520086e-01 7 92040899 92041781 883 + 0.442 0.000 -13.629
ENSG00000127914 E036 12.3380452 0.0015791553 6.785535e-06 4.688694e-05 7 92042046 92042186 141 + 1.085 0.250 -3.840
ENSG00000127914 E037 13.3276871 0.0013099058 4.482999e-03 1.449302e-02 7 92042668 92042771 104 + 1.089 0.690 -1.535
ENSG00000127914 E038 0.0000000       7 92042772 92043143 372 +      
ENSG00000127914 E039 0.3729606 0.0277564060 2.179603e-01 3.479676e-01 7 92043282 92043377 96 + 0.055 0.250 2.520
ENSG00000127914 E040 20.8630409 0.0207213677 6.808845e-03 2.072586e-02 7 92045008 92045213 206 + 1.266 0.907 -1.304
ENSG00000127914 E041 25.1371742 0.0007907250 3.214571e-03 1.089858e-02 7 92052726 92052958 233 + 1.339 1.046 -1.039
ENSG00000127914 E042 0.0000000       7 92057626 92058414 789 +      
ENSG00000127914 E043 20.4335929 0.0008953031 1.667696e-01 2.839808e-01 7 92061260 92061422 163 + 1.232 1.103 -0.458
ENSG00000127914 E044 26.0994707 0.0007273267 9.582948e-03 2.773940e-02 7 92062274 92062486 213 + 1.347 1.103 -0.861
ENSG00000127914 E045 0.2924217 0.0276867957 1.000000e+00   7 92062487 92063461 975 + 0.104 0.000 -11.235
ENSG00000127914 E046 0.0000000       7 92063462 92063500 39 +      
ENSG00000127914 E047 0.6696487 0.0217182421 6.054529e-01 7.258378e-01 7 92063501 92065230 1730 + 0.149 0.250 0.935
ENSG00000127914 E048 28.2318934 0.0007786678 1.197403e-02 3.346924e-02 7 92065231 92065463 233 + 1.377 1.154 -0.787
ENSG00000127914 E049 20.6093910 0.0021254904 1.708907e-04 8.389237e-04 7 92066427 92066546 120 + 1.271 0.810 -1.697
ENSG00000127914 E050 23.5790645 0.0008168490 4.630335e-05 2.630452e-04 7 92070030 92070182 153 + 1.328 0.859 -1.702
ENSG00000127914 E051 9.7039564 0.0017787906 2.395205e-02 5.970507e-02 7 92070183 92070206 24 + 0.962 0.614 -1.389
ENSG00000127914 E052 0.2934659 0.0337435636 2.187396e-01   7 92070207 92070813 607 + 0.055 0.250 2.515
ENSG00000127914 E053 19.9726854 0.0009137817 6.223509e-05 3.424711e-04 7 92070905 92071009 105 + 1.262 0.754 -1.886
ENSG00000127914 E054 24.7994124 0.0007792295 6.163079e-05 3.394415e-04 7 92076855 92077007 153 + 1.347 0.904 -1.598
ENSG00000127914 E055 26.9752257 0.0007141705 5.200093e-03 1.647477e-02 7 92077696 92077875 180 + 1.365 1.103 -0.924
ENSG00000127914 E056 93.8926570 0.0003561204 8.960309e-07 7.515734e-06 7 92079079 92080152 1074 + 1.891 1.642 -0.843
ENSG00000127914 E057 24.7367428 0.0060334148 4.979745e-02 1.088004e-01 7 92082522 92082662 141 + 1.322 1.129 -0.683
ENSG00000127914 E058 21.2777897 0.0211785530 4.894914e-01 6.269110e-01 7 92083170 92083280 111 + 1.246 1.176 -0.248
ENSG00000127914 E059 24.7021798 0.0024941578 6.627976e-01 7.710234e-01 7 92083281 92083436 156 + 1.299 1.277 -0.078
ENSG00000127914 E060 29.2970312 0.0006957910 3.311075e-01 4.746970e-01 7 92083437 92083655 219 + 1.341 1.439 0.339
ENSG00000127914 E061 17.8818307 0.0010691077 6.447614e-01 7.570147e-01 7 92084640 92084703 64 + 1.160 1.129 -0.111
ENSG00000127914 E062 25.3158903 0.0007818341 4.630442e-01 6.028861e-01 7 92084819 92084940 122 + 1.308 1.259 -0.172
ENSG00000127914 E063 29.5843478 0.0007189233 5.133198e-01 6.481527e-01 7 92085495 92085686 192 + 1.355 1.427 0.249
ENSG00000127914 E064 0.2934659 0.0337435636 2.187396e-01   7 92085824 92085872 49 + 0.055 0.250 2.515
ENSG00000127914 E065 28.8275968 0.0007027875 4.671791e-02 1.033233e-01 7 92086228 92086416 189 + 1.322 1.497 0.603
ENSG00000127914 E066 25.6675498 0.0044389749 2.080792e-01 3.361701e-01 7 92089385 92089529 145 + 1.284 1.414 0.453
ENSG00000127914 E067 10.1908832 0.0016725853 1.487345e-02 4.020505e-02 7 92089530 92091458 1929 + 0.987 0.614 -1.483
ENSG00000127914 E068 2.5163738 0.0058586075 3.287302e-02 7.755149e-02 7 92091661 92091988 328 + 0.520 0.000 -13.949
ENSG00000127914 E069 6.0683445 0.0526952767 9.139156e-01 9.494960e-01 7 92091989 92092673 685 + 0.750 0.754 0.017
ENSG00000127914 E070 2.3905535 0.3433925556 5.528300e-01 6.820665e-01 7 92092674 92092928 255 + 0.482 0.251 -1.379
ENSG00000127914 E071 1.6734503 0.0139789393 5.417491e-01 6.726840e-01 7 92092929 92093096 168 + 0.373 0.250 -0.805
ENSG00000127914 E072 39.0784813 0.0040266199 1.089180e-02 3.090723e-02 7 92093097 92093316 220 + 1.440 1.643 0.694
ENSG00000127914 E073 35.9380163 0.0028724404 3.252980e-02 7.686336e-02 7 92095023 92095173 151 + 1.406 1.586 0.615
ENSG00000127914 E074 0.0000000       7 92095511 92095656 146 +      
ENSG00000127914 E075 35.0414493 0.0257559336 3.163674e-01 4.591196e-01 7 92096689 92096856 168 + 1.404 1.549 0.497
ENSG00000127914 E076 75.2962277 0.0017929761 9.660830e-02 1.852726e-01 7 92096857 92097357 501 + 1.738 1.848 0.371
ENSG00000127914 E077 35.5782901 0.0071663171 1.444285e-03 5.453984e-03 7 92097586 92097699 114 + 1.382 1.651 0.923
ENSG00000127914 E078 29.0523077 0.0027650698 1.314821e-03 5.026312e-03 7 92097700 92097794 95 + 1.296 1.567 0.935
ENSG00000127914 E079 21.7909869 0.0027591826 6.736477e-03 2.053924e-02 7 92098109 92098153 45 + 1.180 1.440 0.907
ENSG00000127914 E080 25.1645526 0.0007442296 3.988954e-03 1.311182e-02 7 92098154 92098214 61 + 1.245 1.497 0.872
ENSG00000127914 E081 0.5933762 0.0268695640 6.096241e-01 7.290897e-01 7 92098215 92099686 1472 + 0.189 0.000 -12.156
ENSG00000127914 E082 40.4816485 0.0005528456 3.183678e-07 2.929704e-06 7 92099687 92099869 183 + 1.418 1.756 1.156
ENSG00000127914 E083 1.0340911 0.0125425020 9.617578e-01 9.798974e-01 7 92099870 92100855 986 + 0.259 0.250 -0.068
ENSG00000127914 E084 42.2690238 0.0005048210 1.766175e-06 1.390098e-05 7 92100856 92101056 201 + 1.442 1.757 1.073
ENSG00000127914 E085 28.1396318 0.0007301402 3.830693e-04 1.709169e-03 7 92102594 92102686 93 + 1.278 1.566 0.997
ENSG00000127914 E086 34.6435205 0.0007347446 3.628361e-08 4.019543e-07 7 92102687 92102826 140 + 1.333 1.720 1.324
ENSG00000127914 E087 27.6968267 0.0020185319 2.946409e-09 4.003933e-08 7 92105678 92105763 86 + 1.214 1.672 1.582
ENSG00000127914 E088 44.2058599 0.0006932157 6.831420e-13 1.722145e-11 7 92107293 92107422 130 + 1.418 1.857 1.495
ENSG00000127914 E089 0.4439371 0.0215779498 1.000000e+00 1.000000e+00 7 92107423 92107929 507 + 0.149 0.000 -11.809
ENSG00000127914 E090 47.4103404 0.0006722046 8.372582e-14 2.407286e-12 7 92108494 92108633 140 + 1.448 1.888 1.496
ENSG00000127914 E091 17.7237859 0.0570008387 2.074671e-03 7.455381e-03 7 92108634 92110121 1488 + 1.045 1.483 1.541
ENSG00000127914 E092 69.7857324 0.0255132870 4.745673e-13 1.226372e-11 7 92110122 92110673 552 + 1.530 2.172 2.164