ENSG00000127616

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000538456 ENSG00000127616 HEK293_OSMI2_2hA HEK293_TMG_2hB SMARCA4 protein_coding protein_coding 103.7123 158.3572 70.36306 4.845855 0.6676401 -1.170178 5.030426 14.2965268 0.000000 3.0531809 0.0000000 -10.4824578 0.03373333 0.090800000 0.00000000 -0.090800000 1.949553e-19 1.949553e-19 FALSE TRUE
ENST00000643296 ENSG00000127616 HEK293_OSMI2_2hA HEK293_TMG_2hB SMARCA4 protein_coding protein_coding 103.7123 158.3572 70.36306 4.845855 0.6676401 -1.170178 9.760941 11.4514121 8.966482 4.3132540 0.6306573 -0.3525628 0.09649583 0.071800000 0.12743333 0.055633333 2.823995e-01 1.949553e-19 FALSE TRUE
ENST00000644065 ENSG00000127616 HEK293_OSMI2_2hA HEK293_TMG_2hB SMARCA4 protein_coding protein_coding 103.7123 158.3572 70.36306 4.845855 0.6676401 -1.170178 9.267662 13.4106491 5.302367 1.7514107 2.6511835 -1.3370277 0.10087500 0.084333333 0.07540000 -0.008933333 8.707256e-01 1.949553e-19 FALSE TRUE
ENST00000644963 ENSG00000127616 HEK293_OSMI2_2hA HEK293_TMG_2hB SMARCA4 protein_coding protein_coding 103.7123 158.3572 70.36306 4.845855 0.6676401 -1.170178 2.017893 0.1988568 4.204159 0.1988568 0.5195607 4.3346584 0.02114167 0.001333333 0.05960000 0.058266667 2.126420e-03 1.949553e-19 FALSE TRUE
ENST00000645460 ENSG00000127616 HEK293_OSMI2_2hA HEK293_TMG_2hB SMARCA4 protein_coding protein_coding 103.7123 158.3572 70.36306 4.845855 0.6676401 -1.170178 9.326364 9.6874020 6.588505 1.6531874 0.8718741 -0.5554591 0.09537083 0.060733333 0.09386667 0.033133333 2.980618e-01 1.949553e-19 FALSE TRUE
ENST00000647230 ENSG00000127616 HEK293_OSMI2_2hA HEK293_TMG_2hB SMARCA4 protein_coding protein_coding 103.7123 158.3572 70.36306 4.845855 0.6676401 -1.170178 9.722008 7.3022683 14.416026 2.3750905 2.5907075 0.9802830 0.11889167 0.045300000 0.20526667 0.159966667 1.027505e-03 1.949553e-19 FALSE TRUE
ENST00000647268 ENSG00000127616 HEK293_OSMI2_2hA HEK293_TMG_2hB SMARCA4 protein_coding protein_coding 103.7123 158.3572 70.36306 4.845855 0.6676401 -1.170178 30.348627 58.3538102 10.428810 1.9071449 0.8471312 -2.4831168 0.26376667 0.368733333 0.14816667 -0.220566667 4.561790e-16 1.949553e-19 FALSE TRUE
MSTRG.16442.14 ENSG00000127616 HEK293_OSMI2_2hA HEK293_TMG_2hB SMARCA4 protein_coding   103.7123 158.3572 70.36306 4.845855 0.6676401 -1.170178 10.914687 19.0968828 3.871119 1.1061362 1.9361926 -2.2995479 0.09281667 0.120833333 0.05456667 -0.066266667 6.584097e-01 1.949553e-19 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000127616 E001 0.5922303 1.798795e-02 8.306567e-02 1.643537e-01 19 10960932 10960956 25 + 0.373 0.091 -2.548
ENSG00000127616 E002 1.6825347 5.902555e-02 2.129825e-03 7.626815e-03 19 10960957 10960991 35 + 0.706 0.166 -3.127
ENSG00000127616 E003 1.3837703 3.379706e-01 6.559040e-02 1.360282e-01 19 10960992 10961000 9 + 0.619 0.167 -2.750
ENSG00000127616 E004 2.7071732 2.048145e-01 3.515532e-02 8.194387e-02 19 10961001 10961009 9 + 0.808 0.340 -2.192
ENSG00000127616 E005 17.4400835 3.560927e-03 1.692123e-04 8.317789e-04 19 10961010 10961029 20 + 1.407 1.119 -1.014
ENSG00000127616 E006 23.5576454 3.966835e-03 5.237509e-04 2.248477e-03 19 10961030 10961042 13 + 1.497 1.263 -0.814
ENSG00000127616 E007 81.1472341 7.952470e-03 2.401971e-04 1.134100e-03 19 10961043 10961080 38 + 1.994 1.811 -0.614
ENSG00000127616 E008 103.8324891 4.404752e-03 1.074433e-04 5.563858e-04 19 10961081 10961104 24 + 2.080 1.928 -0.511
ENSG00000127616 E009 93.3003510 4.586314e-03 9.953027e-04 3.941741e-03 19 10961105 10961109 5 + 2.021 1.890 -0.441
ENSG00000127616 E010 148.6029735 2.354487e-03 3.707897e-08 4.100461e-07 19 10961110 10961174 65 + 2.247 2.073 -0.583
ENSG00000127616 E011 7.5513965 2.347579e-03 8.656937e-03 2.542486e-02 19 10961321 10961729 409 + 1.076 0.804 -1.024
ENSG00000127616 E012 0.0000000       19 10965307 10965309 3 +      
ENSG00000127616 E013 1.2115396 1.202310e-02 8.362904e-01 8.976259e-01 19 10977653 10977815 163 + 0.281 0.336 0.361
ENSG00000127616 E014 6.5854122 2.959354e-02 9.943587e-02 1.896209e-01 19 10980777 10980852 76 + 0.984 0.784 -0.764
ENSG00000127616 E015 3.6461348 4.314022e-03 3.990863e-01 5.428287e-01 19 10983480 10983711 232 + 0.706 0.605 -0.431
ENSG00000127616 E016 78.8385780 1.670367e-03 4.809870e-07 4.267988e-06 19 10984121 10984123 3 + 1.986 1.794 -0.646
ENSG00000127616 E017 353.7255276 5.971706e-03 5.810354e-05 3.221594e-04 19 10984124 10984278 155 + 2.598 2.466 -0.440
ENSG00000127616 E018 358.0236341 4.354183e-03 1.933295e-05 1.203525e-04 19 10984279 10984373 95 + 2.597 2.474 -0.410
ENSG00000127616 E019 450.9411262 4.269235e-03 1.230278e-03 4.743126e-03 19 10985273 10985405 133 + 2.670 2.590 -0.266
ENSG00000127616 E020 568.4275204 6.314760e-03 3.135108e-03 1.066199e-02 19 10986189 10986419 231 + 2.773 2.690 -0.277
ENSG00000127616 E021 384.3013638 8.275357e-03 6.925879e-02 1.421444e-01 19 10986420 10986593 174 + 2.578 2.532 -0.153
ENSG00000127616 E022 221.2987595 1.157874e-02 1.660701e-01 2.830925e-01 19 10986905 10987003 99 + 2.332 2.295 -0.124
ENSG00000127616 E023 418.9272280 1.174959e-02 3.935284e-03 1.296035e-02 19 10987666 10987924 259 + 2.662 2.545 -0.390
ENSG00000127616 E024 420.2303636 1.964502e-03 1.572246e-08 1.868029e-07 19 10989317 10989424 108 + 2.665 2.543 -0.408
ENSG00000127616 E025 265.0864163 1.139337e-03 2.951918e-07 2.735701e-06 19 10989425 10989443 19 + 2.457 2.349 -0.362
ENSG00000127616 E026 287.3071441 2.470958e-03 1.084900e-04 5.611310e-04 19 10991150 10991174 25 + 2.482 2.391 -0.303
ENSG00000127616 E027 447.3756656 2.455279e-03 3.042143e-05 1.807284e-04 19 10991175 10991259 85 + 2.671 2.583 -0.294
ENSG00000127616 E028 414.7414383 3.078450e-03 7.284424e-03 2.196248e-02 19 10991260 10991323 64 + 2.613 2.563 -0.169
ENSG00000127616 E029 343.9223712 3.570909e-03 1.717165e-02 4.532257e-02 19 10994828 10994851 24 + 2.530 2.482 -0.159
ENSG00000127616 E030 525.1289625 2.477615e-03 3.352182e-06 2.483908e-05 19 10994852 10994920 69 + 2.748 2.649 -0.329
ENSG00000127616 E031 568.8298766 1.346511e-03 2.487780e-13 6.689885e-12 19 10994921 10994997 77 + 2.806 2.670 -0.453
ENSG00000127616 E032 304.9672452 2.855223e-04 2.181665e-17 1.017754e-15 19 10994998 10995001 4 + 2.548 2.392 -0.518
ENSG00000127616 E033 454.9250489 1.201575e-04 2.108437e-21 1.583810e-19 19 10996213 10996263 51 + 2.708 2.573 -0.452
ENSG00000127616 E034 283.7048136 1.605637e-04 6.646617e-13 1.679133e-11 19 10996264 10996264 1 + 2.499 2.371 -0.426
ENSG00000127616 E035 293.1468155 1.631334e-04 1.303565e-12 3.137150e-11 19 10996265 10996273 9 + 2.510 2.387 -0.412
ENSG00000127616 E036 350.4222470 1.285207e-04 1.005296e-21 7.745029e-20 19 10996274 10996316 43 + 2.610 2.451 -0.528
ENSG00000127616 E037 218.7651099 1.998053e-04 1.055747e-18 5.820957e-17 19 10996317 10996334 18 + 2.425 2.236 -0.631
ENSG00000127616 E038 248.4115083 1.334546e-03 8.230276e-13 2.049154e-11 19 10996335 10996380 46 + 2.472 2.298 -0.578
ENSG00000127616 E039 154.7950817 2.521296e-03 1.946358e-09 2.731548e-08 19 10996494 10996496 3 + 2.281 2.088 -0.644
ENSG00000127616 E040 301.4509663 3.022899e-03 8.324853e-08 8.588234e-07 19 10996497 10996544 48 + 2.537 2.391 -0.490
ENSG00000127616 E041 378.0923860 4.126945e-03 1.355593e-04 6.837042e-04 19 11003029 11003109 81 + 2.608 2.506 -0.343
ENSG00000127616 E042 333.1636084 4.307005e-03 3.580914e-03 1.195681e-02 19 11003110 11003152 43 + 2.534 2.461 -0.245
ENSG00000127616 E043 278.0185206 3.719518e-03 2.622854e-05 1.582155e-04 19 11003153 11003159 7 + 2.485 2.366 -0.399
ENSG00000127616 E044 389.9145766 2.938605e-03 2.821801e-04 1.307237e-03 19 11003340 11003397 58 + 2.607 2.526 -0.270
ENSG00000127616 E045 601.6034138 2.222748e-03 1.204544e-03 4.655662e-03 19 11007902 11008023 122 + 2.776 2.724 -0.175
ENSG00000127616 E046 0.3289534 2.936610e-02 5.879606e-01   19 11008024 11008323 300 + 0.163 0.091 -0.961
ENSG00000127616 E047 340.8501013 2.350682e-03 9.624695e-03 2.784068e-02 19 11010381 11010393 13 + 2.525 2.480 -0.149
ENSG00000127616 E048 733.9701838 1.358627e-03 1.168057e-04 5.992334e-04 19 11010394 11010531 138 + 2.861 2.810 -0.170
ENSG00000127616 E049 3.4094503 3.977286e-02 1.456863e-01 2.557833e-01 19 11012344 11012948 605 + 0.744 0.525 -0.953
ENSG00000127616 E050 985.1908819 8.942857e-05 2.203899e-17 1.027620e-15 19 11012949 11013112 164 + 3.002 2.930 -0.241
ENSG00000127616 E051 0.0000000       19 11018312 11018331 20 +      
ENSG00000127616 E052 0.0000000       19 11018870 11018956 87 +      
ENSG00000127616 E053 652.6430455 5.676484e-04 8.685488e-11 1.549524e-09 19 11018957 11019013 57 + 2.833 2.748 -0.283
ENSG00000127616 E054 413.0715562 2.560001e-03 5.967462e-04 2.521676e-03 19 11019014 11019023 10 + 2.625 2.556 -0.230
ENSG00000127616 E055 3.0258937 5.156967e-03 1.244093e-01 2.262635e-01 19 11019024 11019590 567 + 0.707 0.491 -0.961
ENSG00000127616 E056 431.3936345 9.270140e-04 1.517053e-04 7.545714e-04 19 11019591 11019602 12 + 2.633 2.580 -0.177
ENSG00000127616 E057 798.4025428 3.148364e-04 1.474222e-07 1.449261e-06 19 11019603 11019701 99 + 2.895 2.847 -0.160
ENSG00000127616 E058 1.8820316 3.721095e-02 9.169682e-01 9.515709e-01 19 11020581 11021724 1144 + 0.450 0.455 0.025
ENSG00000127616 E059 483.8852421 1.571497e-04 4.857894e-07 4.306164e-06 19 11021725 11021747 23 + 2.683 2.627 -0.188
ENSG00000127616 E060 1022.9897772 1.008819e-04 1.223778e-05 7.966226e-05 19 11021748 11021967 220 + 2.984 2.963 -0.070
ENSG00000127616 E061 697.9976198 2.405196e-04 3.680602e-02 8.509836e-02 19 11023518 11023631 114 + 2.804 2.804 0.002
ENSG00000127616 E062 686.8287880 7.556580e-04 5.588529e-02 1.194901e-01 19 11024331 11024438 108 + 2.800 2.797 -0.008
ENSG00000127616 E063 700.8800741 9.587352e-05 5.693182e-01 6.959056e-01 19 11025422 11025508 87 + 2.775 2.818 0.141
ENSG00000127616 E064 3.0634564 5.148264e-03 5.571510e-01 6.856294e-01 19 11025509 11025619 111 + 0.621 0.552 -0.309
ENSG00000127616 E065 588.8082758 1.089143e-04 5.643546e-01 6.916502e-01 19 11026300 11026346 47 + 2.699 2.742 0.144
ENSG00000127616 E066 2.5023469 8.386149e-03 6.468040e-01 7.586090e-01 19 11027732 11027783 52 + 0.450 0.552 0.497
ENSG00000127616 E067 1045.2513513 8.523674e-05 4.259793e-02 9.581425e-02 19 11027784 11027950 167 + 2.936 2.995 0.198
ENSG00000127616 E068 803.1512880 1.359832e-04 5.725751e-07 5.009127e-06 19 11030730 11030798 69 + 2.785 2.894 0.360
ENSG00000127616 E069 810.2577023 9.231291e-04 3.911804e-11 7.390102e-10 19 11030799 11030893 95 + 2.741 2.912 0.571
ENSG00000127616 E070 52.9757414 5.462964e-04 9.170680e-03 2.671091e-02 19 11030894 11032666 1773 + 1.755 1.654 -0.341
ENSG00000127616 E071 10.9019615 1.565007e-03 2.761972e-02 6.725544e-02 19 11033082 11033289 208 + 1.165 0.973 -0.699
ENSG00000127616 E072 1266.6754334 2.891365e-04 9.522472e-11 1.685827e-09 19 11033290 11033486 197 + 2.971 3.095 0.412
ENSG00000127616 E073 634.6526999 1.905831e-03 1.369623e-01 2.438544e-01 19 11033487 11033517 31 + 2.708 2.784 0.254
ENSG00000127616 E074 0.1482932 4.184339e-02 1.000000e+00   19 11033727 11033766 40 + 0.000 0.091 8.929
ENSG00000127616 E075 29.7592647 6.573399e-04 3.024534e-02 7.244771e-02 19 11033767 11033771 5 + 1.522 1.410 -0.383
ENSG00000127616 E076 47.2847735 4.847443e-04 2.303636e-02 5.782579e-02 19 11033772 11033865 94 + 1.703 1.614 -0.303
ENSG00000127616 E077 2.5420136 6.241730e-02 6.240803e-01 7.405350e-01 19 11033866 11034122 257 + 0.450 0.574 0.598
ENSG00000127616 E078 949.5424567 2.419093e-03 1.473477e-02 3.989164e-02 19 11034123 11034200 78 + 2.862 2.967 0.347
ENSG00000127616 E079 2.7665673 8.907016e-02 8.427332e-01 9.020148e-01 19 11034859 11034913 55 + 0.515 0.575 0.279
ENSG00000127616 E080 1108.6212261 1.634426e-03 3.371570e-05 1.980140e-04 19 11034914 11035021 108 + 2.907 3.040 0.443
ENSG00000127616 E081 1178.6560435 1.217374e-03 5.437303e-14 1.605237e-12 19 11035022 11035132 111 + 2.889 3.081 0.639
ENSG00000127616 E082 27.1751603 1.359682e-02 9.449541e-01 9.694557e-01 19 11039458 11039553 96 + 1.383 1.422 0.136
ENSG00000127616 E083 15.9417271 8.079368e-03 5.915469e-01 7.142879e-01 19 11039554 11040495 942 + 1.204 1.183 -0.074
ENSG00000127616 E084 2.4982986 1.203645e-02 1.613645e-02 4.303482e-02 19 11040634 11040643 10 + 0.744 0.380 -1.700
ENSG00000127616 E085 20.2367649 9.417487e-04 6.491814e-01 7.605074e-01 19 11040644 11041297 654 + 1.239 1.309 0.244
ENSG00000127616 E086 179.2650212 1.763379e-03 1.517975e-04 7.549111e-04 19 11041298 11041306 9 + 2.086 2.259 0.578
ENSG00000127616 E087 1191.4937983 1.943840e-03 1.573227e-10 2.683864e-09 19 11041307 11041438 132 + 2.893 3.086 0.644
ENSG00000127616 E088 1104.1779060 3.335630e-03 3.868341e-05 2.237259e-04 19 11041439 11041560 122 + 2.883 3.047 0.546
ENSG00000127616 E089 0.1482932 4.184339e-02 1.000000e+00   19 11047595 11047795 201 + 0.000 0.091 8.929
ENSG00000127616 E090 2.1463156 1.794333e-01 7.367695e-02 1.494163e-01 19 11056217 11056382 166 + 0.707 0.330 -1.842
ENSG00000127616 E091 344.5798593 3.839366e-03 8.295465e-05 4.420305e-04 19 11058255 11058257 3 + 2.361 2.547 0.618
ENSG00000127616 E092 1138.4701049 4.504626e-03 5.235756e-04 2.247877e-03 19 11058258 11058363 106 + 2.901 3.059 0.528
ENSG00000127616 E093 1388.3563337 5.632050e-03 1.745468e-04 8.550726e-04 19 11058788 11058889 102 + 2.969 3.151 0.604
ENSG00000127616 E094 11.7800938 1.444709e-03 3.685795e-03 1.225517e-02 19 11058890 11059227 338 + 0.778 1.148 1.387
ENSG00000127616 E095 1609.0328342 3.016272e-03 2.370347e-12 5.470946e-11 19 11059753 11059885 133 + 2.989 3.226 0.789
ENSG00000127616 E096 1497.7422439 2.624164e-03 1.601326e-16 6.726529e-15 19 11060045 11060187 143 + 2.939 3.200 0.868
ENSG00000127616 E097 1.3243307 1.086478e-02 3.866845e-02 8.856782e-02 19 11060461 11060502 42 + 0.000 0.421 11.742
ENSG00000127616 E098 4.7165621 3.508433e-03 2.054490e-03 7.394782e-03 19 11061743 11061783 41 + 0.281 0.834 2.681
ENSG00000127616 E099 1812.4301732 3.067035e-03 1.848307e-20 1.247884e-18 19 11061784 11062468 685 + 2.988 3.290 1.004
ENSG00000127616 E100 8.8796542 2.117311e-03 9.902737e-04 3.925189e-03 19 11065193 11066122 930 + 0.571 1.052 1.913
ENSG00000127616 E101 0.5169874 2.040265e-02 9.952824e-01 1.000000e+00 19 11078997 11079426 430 + 0.163 0.166 0.039