ENSG00000126883

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000359428 ENSG00000126883 HEK293_OSMI2_2hA HEK293_TMG_2hB NUP214 protein_coding protein_coding 27.28923 36.907 22.78725 0.8398437 0.6078751 -0.6954257 10.5848080 8.62529669 10.5065023 2.08093454 0.80776833 0.2843373 0.41650417 0.23480000 0.463433333 0.22863333 4.989274e-02 4.584888e-15 FALSE TRUE
ENST00000411637 ENSG00000126883 HEK293_OSMI2_2hA HEK293_TMG_2hB NUP214 protein_coding protein_coding 27.28923 36.907 22.78725 0.8398437 0.6078751 -0.6954257 3.4506066 2.34442686 4.1871752 0.20787384 0.46714800 0.8340428 0.13859583 0.06380000 0.183400000 0.11960000 4.406239e-06 4.584888e-15 FALSE TRUE
ENST00000453861 ENSG00000126883 HEK293_OSMI2_2hA HEK293_TMG_2hB NUP214 protein_coding nonsense_mediated_decay 27.28923 36.907 22.78725 0.8398437 0.6078751 -0.6954257 0.5976076 2.07161616 0.0000000 0.50576592 0.00000000 -7.7015603 0.01791250 0.05673333 0.000000000 -0.05673333 3.393204e-10 4.584888e-15 TRUE TRUE
ENST00000650694 ENSG00000126883 HEK293_OSMI2_2hA HEK293_TMG_2hB NUP214 protein_coding nonsense_mediated_decay 27.28923 36.907 22.78725 0.8398437 0.6078751 -0.6954257 1.4558788 4.58879928 0.1951392 1.21593055 0.06805712 -4.4865823 0.04302917 0.12533333 0.008500000 -0.11683333 8.310601e-06 4.584888e-15 TRUE TRUE
ENST00000652454 ENSG00000126883 HEK293_OSMI2_2hA HEK293_TMG_2hB NUP214 protein_coding protein_coding 27.28923 36.907 22.78725 0.8398437 0.6078751 -0.6954257 0.6665064 0.08842092 1.2057482 0.08842092 0.37932821 3.6267357 0.02843750 0.00230000 0.053633333 0.05133333 1.000707e-02 4.584888e-15 FALSE TRUE
ENST00000695500 ENSG00000126883 HEK293_OSMI2_2hA HEK293_TMG_2hB NUP214 protein_coding retained_intron 27.28923 36.907 22.78725 0.8398437 0.6078751 -0.6954257 4.5496759 11.24991841 0.6002888 2.21522676 0.05827510 -4.2055606 0.13470417 0.30306667 0.026366667 -0.27670000 1.485412e-11 4.584888e-15 FALSE TRUE
MSTRG.33537.28 ENSG00000126883 HEK293_OSMI2_2hA HEK293_TMG_2hB NUP214 protein_coding   27.28923 36.907 22.78725 0.8398437 0.6078751 -0.6954257 1.6607994 4.76659102 0.0597008 0.86108950 0.03177473 -6.0986623 0.04897917 0.12840000 0.002566667 -0.12583333 4.584888e-15 4.584888e-15 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000126883 E001 0.9986021 0.0119976671 2.248893e-01 3.562942e-01 9 131125573 131125585 13 + 0.397 0.195 -1.395
ENSG00000126883 E002 1.5834561 0.0159833743 8.749750e-01 9.236728e-01 9 131125586 131125593 8 + 0.397 0.384 -0.071
ENSG00000126883 E003 2.9475408 0.1422529803 2.815171e-01 4.214148e-01 9 131125594 131125595 2 + 0.398 0.655 1.234
ENSG00000126883 E004 74.3679240 0.0276671757 5.710025e-04 2.425333e-03 9 131125596 131125738 143 + 2.009 1.738 -0.913
ENSG00000126883 E005 54.6829712 0.0225921584 8.607035e-04 3.475895e-03 9 131125739 131125749 11 + 1.870 1.614 -0.867
ENSG00000126883 E006 0.0000000       9 131125973 131126079 107 +      
ENSG00000126883 E007 0.0000000       9 131126080 131126093 14 +      
ENSG00000126883 E008 0.0000000       9 131126094 131126194 101 +      
ENSG00000126883 E009 0.0000000       9 131126412 131126460 49 +      
ENSG00000126883 E010 70.1248179 0.0256352894 1.222235e-04 6.239859e-04 9 131127524 131127576 53 + 1.998 1.695 -1.023
ENSG00000126883 E011 97.3699110 0.0177590241 2.014978e-06 1.566528e-05 9 131127577 131127719 143 + 2.147 1.828 -1.069
ENSG00000126883 E012 118.4444164 0.0111518504 7.705318e-09 9.699331e-08 9 131128332 131128483 152 + 2.233 1.911 -1.081
ENSG00000126883 E013 0.0000000       9 131128528 131128808 281 +      
ENSG00000126883 E014 147.1949271 0.0160197360 7.181622e-08 7.497181e-07 9 131129279 131129477 199 + 2.331 1.998 -1.115
ENSG00000126883 E015 94.8822932 0.0038016664 9.031847e-11 1.605872e-09 9 131130766 131130836 71 + 2.115 1.838 -0.927
ENSG00000126883 E016 86.7681799 0.0108354452 4.665233e-04 2.032084e-03 9 131132596 131132659 64 + 2.036 1.843 -0.647
ENSG00000126883 E017 92.8144322 0.0028554489 4.397684e-06 3.170078e-05 9 131133106 131133196 91 + 2.057 1.879 -0.599
ENSG00000126883 E018 64.8043108 0.0048200147 8.920398e-06 6.000151e-05 9 131133197 131133209 13 + 1.922 1.705 -0.732
ENSG00000126883 E019 115.3445419 0.0031442467 9.595091e-10 1.427599e-08 9 131134898 131135004 107 + 2.179 1.947 -0.779
ENSG00000126883 E020 0.8417882 0.0168234213 9.363249e-01 9.639436e-01 9 131135005 131135725 721 + 0.242 0.267 0.189
ENSG00000126883 E021 0.2934659 0.0298660641 8.077936e-01   9 131135726 131135881 156 + 0.138 0.108 -0.399
ENSG00000126883 E022 0.6245948 0.0497788943 1.513295e-01 2.634770e-01 9 131135882 131135939 58 + 0.000 0.269 12.755
ENSG00000126883 E023 81.0850714 0.0052200659 6.866161e-09 8.727096e-08 9 131135940 131135987 48 + 2.049 1.774 -0.925
ENSG00000126883 E024 68.9817421 0.0007870054 1.672979e-11 3.358848e-10 9 131135988 131136006 19 + 1.976 1.707 -0.908
ENSG00000126883 E025 130.0963767 0.0116094118 1.358012e-05 8.747449e-05 9 131139281 131139407 127 + 2.232 2.001 -0.771
ENSG00000126883 E026 121.0144989 0.0205269962 1.439833e-04 7.207992e-04 9 131140549 131140710 162 + 2.211 1.960 -0.841
ENSG00000126883 E027 1.6532882 0.0287698013 1.627964e-01 2.787911e-01 9 131140711 131142981 2271 + 0.558 0.328 -1.210
ENSG00000126883 E028 131.5870614 0.0128918117 8.404187e-05 4.472075e-04 9 131144280 131144567 288 + 2.229 2.015 -0.716
ENSG00000126883 E029 40.7378232 0.0296759586 1.481482e-02 4.007514e-02 9 131144568 131144576 9 + 1.717 1.515 -0.689
ENSG00000126883 E030 93.2263175 0.0155774448 2.268880e-03 8.056088e-03 9 131144577 131144701 125 + 2.062 1.882 -0.602
ENSG00000126883 E031 71.1846387 0.0012527180 2.568542e-07 2.409520e-06 9 131144702 131144754 53 + 1.957 1.753 -0.686
ENSG00000126883 E032 5.5770805 0.0404890041 5.202648e-07 4.586014e-06 9 131144755 131145340 586 + 1.125 0.328 -3.449
ENSG00000126883 E033 39.0617571 0.0005393200 1.576220e-03 5.882088e-03 9 131146129 131146161 33 + 1.678 1.527 -0.517
ENSG00000126883 E034 42.7570615 0.0005015079 1.483370e-04 7.397988e-04 9 131146162 131146164 3 + 1.730 1.552 -0.605
ENSG00000126883 E035 136.2496272 0.0002662324 4.064499e-16 1.615626e-14 9 131146165 131146304 140 + 2.248 2.023 -0.752
ENSG00000126883 E036 17.0941788 0.0010294377 2.950798e-07 2.734930e-06 9 131147487 131147489 3 + 1.445 1.050 -1.397
ENSG00000126883 E037 129.7578161 0.0017663532 4.597320e-17 2.060441e-15 9 131147490 131147584 95 + 2.252 1.969 -0.949
ENSG00000126883 E038 0.0000000       9 131149951 131150100 150 +      
ENSG00000126883 E039 130.6856652 0.0042081483 1.979417e-11 3.924590e-10 9 131150324 131150410 87 + 2.249 1.980 -0.898
ENSG00000126883 E040 181.3436712 0.0131578736 1.515041e-04 7.537684e-04 9 131150616 131150765 150 + 2.358 2.160 -0.663
ENSG00000126883 E041 201.6181412 0.0079204749 7.586552e-04 3.110256e-03 9 131151736 131151894 159 + 2.373 2.235 -0.461
ENSG00000126883 E042 179.3164918 0.0040075959 2.823107e-06 2.125712e-05 9 131159383 131159486 104 + 2.334 2.173 -0.536
ENSG00000126883 E043 170.6568903 0.0045557001 5.304219e-04 2.273252e-03 9 131162991 131163099 109 + 2.289 2.171 -0.394
ENSG00000126883 E044 129.4414208 0.0007796246 5.836411e-05 3.233583e-04 9 131163100 131163173 74 + 2.163 2.053 -0.367
ENSG00000126883 E045 140.6232124 0.0045919141 2.752331e-02 6.705946e-02 9 131163870 131163955 86 + 2.177 2.107 -0.234
ENSG00000126883 E046 147.0800936 0.0002514219 3.854070e-03 1.273222e-02 9 131164061 131164144 84 + 2.191 2.129 -0.206
ENSG00000126883 E047 0.0000000       9 131164145 131164549 405 +      
ENSG00000126883 E048 153.8863434 0.0005741406 8.170780e-05 4.360734e-04 9 131174055 131174167 113 + 2.231 2.136 -0.317
ENSG00000126883 E049 154.6518455 0.0047887801 6.213099e-03 1.917524e-02 9 131174168 131174318 151 + 2.232 2.141 -0.305
ENSG00000126883 E050 148.5395186 0.0065520988 6.610796e-02 1.368971e-01 9 131175460 131175621 162 + 2.196 2.137 -0.198
ENSG00000126883 E051 0.0000000       9 131175622 131175719 98 +      
ENSG00000126883 E052 0.0000000       9 131175720 131175795 76 +      
ENSG00000126883 E053 0.2934659 0.0298660641 8.077936e-01   9 131175796 131177572 1777 + 0.138 0.108 -0.399
ENSG00000126883 E054 87.8814359 0.0124378675 1.002853e-01 1.909153e-01 9 131178311 131178348 38 + 1.982 1.906 -0.254
ENSG00000126883 E055 123.6180998 0.0049152456 3.755749e-02 8.650961e-02 9 131178349 131178410 62 + 2.123 2.056 -0.226
ENSG00000126883 E056 1.5675615 0.2646850494 8.006813e-01 8.729678e-01 9 131184373 131187288 2916 + 0.326 0.438 0.640
ENSG00000126883 E057 94.8977789 0.0020633923 1.180524e-01 2.171461e-01 9 131187289 131187311 23 + 1.993 1.954 -0.133
ENSG00000126883 E058 121.2383406 0.0034909735 1.315191e-01 2.362571e-01 9 131187312 131187357 46 + 2.098 2.061 -0.124
ENSG00000126883 E059 81.6810211 0.0004021612 1.379033e-01 2.451636e-01 9 131187358 131187364 7 + 1.926 1.891 -0.115
ENSG00000126883 E060 152.0564389 0.0020881826 2.016555e-01 3.282414e-01 9 131189053 131189131 79 + 2.186 2.167 -0.064
ENSG00000126883 E061 0.1482932 0.0421362996 6.544500e-01   9 131190121 131190125 5 + 0.000 0.108 11.155
ENSG00000126883 E062 0.1482932 0.0421362996 6.544500e-01   9 131190126 131190138 13 + 0.000 0.108 11.155
ENSG00000126883 E063 0.1482932 0.0421362996 6.544500e-01   9 131190139 131190142 4 + 0.000 0.108 11.155
ENSG00000126883 E064 0.1482932 0.0421362996 6.544500e-01   9 131190143 131190172 30 + 0.000 0.108 11.155
ENSG00000126883 E065 0.6330284 0.0551932064 7.477050e-01 8.351392e-01 9 131190173 131190480 308 + 0.242 0.195 -0.401
ENSG00000126883 E066 0.6600969 0.0554876001 7.440852e-01 8.325392e-01 9 131192124 131192207 84 + 0.242 0.195 -0.395
ENSG00000126883 E067 134.8876161 0.0076310747 2.825089e-01 4.225191e-01 9 131192208 131192292 85 + 2.140 2.113 -0.089
ENSG00000126883 E068 0.2998086 0.0301376285 8.075914e-01   9 131192293 131192767 475 + 0.138 0.108 -0.399
ENSG00000126883 E069 131.0063752 0.0017295896 1.958983e-01 3.211022e-01 9 131195233 131195294 62 + 2.122 2.101 -0.070
ENSG00000126883 E070 2.8569660 0.0085915333 3.881071e-04 1.728912e-03 9 131195295 131195658 364 + 0.820 0.268 -2.717
ENSG00000126883 E071 4.8249252 0.0482380045 2.663013e-03 9.261805e-03 9 131196885 131197215 331 + 0.982 0.513 -1.927
ENSG00000126883 E072 203.2381101 0.0016637017 2.020447e-02 5.191338e-02 9 131197216 131197337 122 + 2.325 2.278 -0.158
ENSG00000126883 E073 157.8015476 0.0033181682 8.654999e-02 1.698852e-01 9 131197338 131197416 79 + 2.213 2.170 -0.143
ENSG00000126883 E074 422.3475789 0.0013578725 1.586493e-01 2.733301e-01 9 131197417 131197886 470 + 2.618 2.610 -0.027
ENSG00000126883 E075 133.0723615 0.0011743611 8.675889e-01 9.188429e-01 9 131197887 131197918 32 + 2.098 2.118 0.066
ENSG00000126883 E076 488.3131286 0.0025652654 5.580628e-02 1.193602e-01 9 131197919 131198451 533 + 2.625 2.708 0.273
ENSG00000126883 E077 670.1589016 0.0024165224 8.004394e-08 8.282764e-07 9 131198452 131199015 564 + 2.701 2.873 0.572
ENSG00000126883 E078 302.2363135 0.0029085577 5.852847e-09 7.549563e-08 9 131201647 131201717 71 + 2.319 2.543 0.749
ENSG00000126883 E079 6.7625677 0.0040426088 2.899558e-01 4.307138e-01 9 131212657 131215211 2555 + 0.767 0.924 0.606
ENSG00000126883 E080 444.0390026 0.0020575943 3.995217e-11 7.534161e-10 9 131215212 131215368 157 + 2.494 2.706 0.706
ENSG00000126883 E081 0.7718438 0.0420323664 4.931131e-01 6.301607e-01 9 131222498 131222777 280 + 0.138 0.269 1.198
ENSG00000126883 E082 379.6326576 0.0021040569 9.903502e-14 2.815409e-12 9 131222778 131222930 153 + 2.401 2.647 0.819
ENSG00000126883 E083 117.4586509 0.0025285164 9.845474e-10 1.462020e-08 9 131228160 131228174 15 + 1.859 2.149 0.973
ENSG00000126883 E084 177.4667368 0.0088517139 1.450069e-05 9.279217e-05 9 131228175 131228223 49 + 2.059 2.324 0.885
ENSG00000126883 E085 231.5759276 0.0082589711 8.429916e-08 8.683716e-07 9 131228224 131228293 70 + 2.145 2.449 1.016
ENSG00000126883 E086 208.0194192 0.0061120247 1.899415e-13 5.195474e-12 9 131228294 131228331 38 + 2.042 2.419 1.261
ENSG00000126883 E087 9.7226883 0.0017795827 2.603121e-01 3.977999e-01 9 131228518 131229662 1145 + 1.073 0.978 -0.347
ENSG00000126883 E088 5.6055823 0.0030107683 8.855530e-02 1.729183e-01 9 131229663 131229825 163 + 0.640 0.892 1.018
ENSG00000126883 E089 10.8225867 0.0756780152 4.412567e-01 5.828911e-01 9 131229826 131230629 804 + 0.965 1.112 0.537
ENSG00000126883 E090 324.6184412 0.0025091643 2.372928e-24 2.435233e-22 9 131230630 131230769 140 + 2.245 2.607 1.208
ENSG00000126883 E091 6.4821966 0.0697273703 7.916186e-01 8.667270e-01 9 131232162 131232283 122 + 0.889 0.855 -0.130
ENSG00000126883 E092 178.1250142 0.0020861606 1.511013e-11 3.055688e-10 9 131232284 131232308 25 + 2.053 2.325 0.908
ENSG00000126883 E093 9.4816661 0.0026085139 2.329800e-02 5.837141e-02 9 131232309 131233008 700 + 1.137 0.923 -0.785
ENSG00000126883 E094 210.6679402 0.0032113069 8.434755e-13 2.096208e-11 9 131233454 131233501 48 + 2.103 2.406 1.011
ENSG00000126883 E095 220.9002758 0.0086691993 8.214691e-10 1.237278e-08 9 131233502 131233562 61 + 2.084 2.439 1.186
ENSG00000126883 E096 743.0368752 0.0092073205 1.375255e-15 5.107586e-14 9 131233563 131234663 1101 + 2.565 2.977 1.369