ENSG00000126012

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000375379 ENSG00000126012 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5C protein_coding protein_coding 73.58305 92.69419 61.79712 7.212436 0.3879803 -0.5848615 9.516316 1.039316 13.946526 1.039316 1.8999874 3.7334181 0.14462083 0.01056667 0.22610000 0.21553333 1.597140e-02 9.25233e-13 FALSE TRUE
ENST00000375401 ENSG00000126012 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5C protein_coding protein_coding 73.58305 92.69419 61.79712 7.212436 0.3879803 -0.5848615 32.181141 48.195118 19.282399 3.797319 0.9539107 -1.3211538 0.42063750 0.51996667 0.31193333 -0.20803333 9.252330e-13 9.25233e-13 FALSE TRUE
ENST00000404049 ENSG00000126012 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5C protein_coding protein_coding 73.58305 92.69419 61.79712 7.212436 0.3879803 -0.5848615 1.584290 0.000000 4.146413 0.000000 2.1694569 8.6991954 0.02639167 0.00000000 0.06753333 0.06753333 1.508839e-01 9.25233e-13 FALSE TRUE
MSTRG.34293.10 ENSG00000126012 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5C protein_coding   73.58305 92.69419 61.79712 7.212436 0.3879803 -0.5848615 6.644565 15.899780 3.314086 3.365573 0.1729899 -2.2588844 0.08355833 0.17663333 0.05360000 -0.12303333 1.197881e-02 9.25233e-13 FALSE TRUE
MSTRG.34293.14 ENSG00000126012 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5C protein_coding   73.58305 92.69419 61.79712 7.212436 0.3879803 -0.5848615 5.281553 5.083020 3.862359 2.777683 3.8623587 -0.3953086 0.07085000 0.05110000 0.06173333 0.01063333 5.414925e-01 9.25233e-13 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000126012 E001 1.5885526 0.0365477053 7.902166e-01 8.658096e-01 X 53176283 53176287 5 - 0.372 0.420 0.263
ENSG00000126012 E002 1.5885526 0.0365477053 7.902166e-01 8.658096e-01 X 53176288 53176292 5 - 0.372 0.420 0.263
ENSG00000126012 E003 3.0956214 0.0323322607 8.250508e-01 8.897862e-01 X 53176293 53176342 50 - 0.570 0.605 0.158
ENSG00000126012 E004 12.7983206 0.0574915238 7.901827e-01 8.657953e-01 X 53176343 53176622 280 - 1.073 1.126 0.190
ENSG00000126012 E005 2.1368749 0.0071130013 7.823699e-01 8.602603e-01 X 53176623 53176634 12 - 0.448 0.492 0.220
ENSG00000126012 E006 3.7747334 0.0395414431 9.453371e-01 9.696800e-01 X 53179745 53179826 82 - 0.665 0.652 -0.053
ENSG00000126012 E007 0.2955422 0.0292367248 6.386346e-01   X 53185055 53185156 102 - 0.162 0.091 -0.952
ENSG00000126012 E008 11.7067448 0.0154176515 1.150926e-01 2.129769e-01 X 53191080 53191320 241 - 0.939 1.125 0.682
ENSG00000126012 E009 48.3190467 0.0141422222 5.978864e-02 1.262557e-01 X 53191321 53191622 302 - 1.548 1.698 0.508
ENSG00000126012 E010 66.0392881 0.0003845248 5.344250e-01 6.664859e-01 X 53191623 53192157 535 - 1.811 1.777 -0.117
ENSG00000126012 E011 123.5004144 0.0023734334 2.487522e-09 3.427797e-08 X 53192158 53192256 99 - 1.857 2.118 0.876
ENSG00000126012 E012 219.0377336 0.0104593698 4.048687e-06 2.940770e-05 X 53192257 53192291 35 - 2.103 2.369 0.891
ENSG00000126012 E013 775.3741497 0.0069773827 1.944444e-09 2.729266e-08 X 53192292 53192486 195 - 2.653 2.915 0.872
ENSG00000126012 E014 661.5687976 0.0120105267 3.161728e-06 2.353371e-05 X 53192487 53192691 205 - 2.584 2.847 0.876
ENSG00000126012 E015 231.9188601 0.0082557162 1.420231e-09 2.046228e-08 X 53192692 53192837 146 - 2.079 2.402 1.078
ENSG00000126012 E016 221.7676408 0.0016545117 3.561029e-05 2.077947e-04 X 53192838 53192892 55 - 2.210 2.343 0.446
ENSG00000126012 E017 378.9999772 0.0015070976 2.802455e-10 4.582610e-09 X 53192893 53192928 36 - 2.411 2.585 0.580
ENSG00000126012 E018 423.8658715 0.0008051314 9.421029e-15 3.109925e-13 X 53192929 53192943 15 - 2.453 2.635 0.605
ENSG00000126012 E019 475.1913642 0.0011569848 3.670000e-13 9.633788e-12 X 53192944 53192965 22 - 2.507 2.684 0.590
ENSG00000126012 E020 554.1562791 0.0024963765 2.324370e-10 3.847823e-09 X 53192966 53193018 53 - 2.566 2.754 0.625
ENSG00000126012 E021 410.8121093 0.0017743918 1.667324e-09 2.370325e-08 X 53193019 53193035 17 - 2.451 2.620 0.565
ENSG00000126012 E022 1334.1277921 0.0017433675 1.733844e-13 4.769443e-12 X 53193036 53193332 297 - 2.964 3.130 0.553
ENSG00000126012 E023 720.1621194 0.0011759464 1.095783e-09 1.612747e-08 X 53193437 53193497 61 - 2.721 2.854 0.443
ENSG00000126012 E024 1012.7507648 0.0005290190 5.998061e-11 1.097041e-09 X 53193498 53193636 139 - 2.890 2.994 0.346
ENSG00000126012 E025 195.5260305 0.0002019650 1.081285e-02 3.071531e-02 X 53193773 53193781 9 - 2.203 2.269 0.221
ENSG00000126012 E026 751.4090623 0.0022856083 3.725886e-06 2.732422e-05 X 53193782 53193851 70 - 2.746 2.871 0.416
ENSG00000126012 E027 2046.8453467 0.0013500517 1.165689e-07 1.169931e-06 X 53194139 53194738 600 - 3.200 3.300 0.332
ENSG00000126012 E028 869.9346852 0.0004646926 5.973566e-05 3.301363e-04 X 53194931 53195068 138 - 2.854 2.917 0.208
ENSG00000126012 E029 648.6905209 0.0001050829 1.414228e-01 2.499743e-01 X 53195231 53195308 78 - 2.758 2.776 0.057
ENSG00000126012 E030 783.2940268 0.0003189965 6.205815e-03 1.915682e-02 X 53195309 53195410 102 - 2.826 2.865 0.130
ENSG00000126012 E031 870.5636120 0.0007471978 3.103432e-01 4.527320e-01 X 53195916 53196054 139 - 2.888 2.904 0.052
ENSG00000126012 E032 1175.8475814 0.0008462714 1.160770e-02 3.260017e-02 X 53196686 53197044 359 - 3.000 3.042 0.142
ENSG00000126012 E033 5.6874507 0.0051182892 2.548591e-04 1.195521e-03 X 53197657 53197770 114 - 1.057 0.581 -1.886
ENSG00000126012 E034 524.0081679 0.0002682098 2.234069e-03 7.948872e-03 X 53197771 53197876 106 - 2.640 2.691 0.171
ENSG00000126012 E035 710.8974339 0.0006949625 1.308532e-02 3.610665e-02 X 53198490 53198637 148 - 2.779 2.824 0.147
ENSG00000126012 E036 37.9938913 0.0005485723 2.606780e-10 4.279433e-09 X 53198638 53198763 126 - 1.770 1.404 -1.248
ENSG00000126012 E037 670.3557789 0.0009052037 6.745591e-01 7.800496e-01 X 53198764 53198888 125 - 2.782 2.788 0.019
ENSG00000126012 E038 796.9389021 0.0009466355 1.340202e-01 2.397405e-01 X 53198977 53199158 182 - 2.884 2.851 -0.109
ENSG00000126012 E039 3.7985796 0.0090561687 6.956546e-01 7.962113e-01 X 53200109 53201303 1195 - 0.620 0.676 0.241
ENSG00000126012 E040 5.0186637 0.1514380157 3.522441e-01 4.965151e-01 X 53201304 53201549 246 - 0.621 0.791 0.702
ENSG00000126012 E041 725.7566674 0.0009878906 5.149741e-03 1.633738e-02 X 53201550 53201744 195 - 2.862 2.802 -0.201
ENSG00000126012 E042 595.4170745 0.0017312300 1.142577e-05 7.492225e-05 X 53201854 53201973 120 - 2.810 2.698 -0.371
ENSG00000126012 E043 2.0992976 0.0084307455 9.345454e-01 9.627866e-01 X 53201974 53202773 800 - 0.449 0.459 0.053
ENSG00000126012 E044 0.8406553 0.1137784313 5.235218e-01 6.571935e-01 X 53208891 53209081 191 - 0.162 0.287 1.048
ENSG00000126012 E045 10.4770725 0.0361568362 3.730741e-01 5.175090e-01 X 53209082 53210413 1332 - 0.939 1.054 0.425
ENSG00000126012 E046 739.6322193 0.0013077145 1.353368e-04 6.827096e-04 X 53210414 53210576 163 - 2.886 2.801 -0.284
ENSG00000126012 E047 667.4293936 0.0023567784 2.390042e-02 5.960068e-02 X 53210676 53210857 182 - 2.828 2.765 -0.208
ENSG00000126012 E048 592.9883391 0.0086723278 4.182431e-02 9.440482e-02 X 53211497 53211655 159 - 2.797 2.705 -0.307
ENSG00000126012 E049 0.6244956 0.0202601903 5.290750e-01 6.619242e-01 X 53211656 53211786 131 - 0.280 0.167 -0.950
ENSG00000126012 E050 567.5506285 0.0034344217 1.190562e-05 7.774311e-05 X 53211787 53211906 120 - 2.809 2.668 -0.469
ENSG00000126012 E051 708.7974894 0.0014689719 3.106475e-11 5.966870e-10 X 53214689 53214847 159 - 2.913 2.759 -0.513
ENSG00000126012 E052 0.3634088 0.3465314608 5.355398e-01   X 53215714 53215794 81 - 0.001 0.168 8.484
ENSG00000126012 E053 719.5629512 0.0011842702 6.856125e-15 2.318199e-13 X 53215795 53215976 182 - 2.929 2.760 -0.562
ENSG00000126012 E054 523.4354182 0.0025841849 4.212372e-16 1.669850e-14 X 53216074 53216197 124 - 2.834 2.594 -0.801
ENSG00000126012 E055 514.4172565 0.0023917012 8.550244e-14 2.453898e-12 X 53217143 53217274 132 - 2.811 2.596 -0.717
ENSG00000126012 E056 188.4545210 0.0003773382 4.018497e-13 1.049190e-11 X 53217275 53217277 3 - 2.370 2.163 -0.689
ENSG00000126012 E057 292.2778958 0.0012562849 2.492432e-20 1.652726e-18 X 53217796 53217809 14 - 2.587 2.334 -0.846
ENSG00000126012 E058 287.6976100 0.0006180686 2.121016e-25 2.411886e-23 X 53217810 53217828 19 - 2.583 2.326 -0.855
ENSG00000126012 E059 318.5653635 0.0011589500 2.894597e-18 1.503627e-16 X 53217829 53217852 24 - 2.612 2.382 -0.768
ENSG00000126012 E060 465.2722345 0.0032344978 2.638016e-12 6.046754e-11 X 53217853 53217966 114 - 2.775 2.548 -0.756
ENSG00000126012 E061 283.4970682 0.0092168482 5.886883e-06 4.124912e-05 X 53218276 53218314 39 - 2.564 2.331 -0.777
ENSG00000126012 E062 398.6793419 0.0070382610 3.733808e-10 5.984423e-09 X 53218315 53218398 84 - 2.738 2.459 -0.929
ENSG00000126012 E063 0.9117205 0.0427964595 1.800876e-02 4.715166e-02 X 53218399 53218563 165 - 0.513 0.091 -3.269
ENSG00000126012 E064 0.0000000       X 53218564 53218712 149 -      
ENSG00000126012 E065 0.0000000       X 53218713 53218737 25 -      
ENSG00000126012 E066 391.3721510 0.0072722512 2.985714e-08 3.361869e-07 X 53220839 53220916 78 - 2.712 2.464 -0.828
ENSG00000126012 E067 36.8410445 0.0176676853 9.369979e-03 2.720732e-02 X 53221688 53221704 17 - 1.677 1.457 -0.752
ENSG00000126012 E068 37.7581909 0.0005477268 1.475928e-05 9.434494e-05 X 53221705 53221730 26 - 1.709 1.454 -0.872
ENSG00000126012 E069 31.7272805 0.0082970178 1.853953e-03 6.770328e-03 X 53221731 53221793 63 - 1.625 1.387 -0.817
ENSG00000126012 E070 1.2210915 0.0117193829 6.494695e-01 7.607368e-01 X 53221794 53221818 25 - 0.372 0.287 -0.533
ENSG00000126012 E071 5.0617194 0.0087410041 6.014379e-02 1.268487e-01 X 53223985 53224066 82 - 0.916 0.654 -1.042
ENSG00000126012 E072 774.7192823 0.0090243748 2.154508e-07 2.052112e-06 X 53224740 53225422 683 - 3.005 2.764 -0.802