ENSG00000125247

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000342624 ENSG00000125247 HEK293_OSMI2_2hA HEK293_TMG_2hB TMTC4 protein_coding protein_coding 7.709052 6.735621 8.864212 0.07348854 0.2193565 0.3956679 0.9325311 0.89999663 1.4892600 0.37188767 0.7239514 0.7203175 0.1140917 0.13376667 0.17143333 0.03766667 9.278542e-01 1.584942e-07 FALSE TRUE
ENST00000376234 ENSG00000125247 HEK293_OSMI2_2hA HEK293_TMG_2hB TMTC4 protein_coding protein_coding 7.709052 6.735621 8.864212 0.07348854 0.2193565 0.3956679 2.9567725 2.46991807 3.5928521 0.37740219 0.4146809 0.5388470 0.3773083 0.36566667 0.40396667 0.03830000 8.488863e-01 1.584942e-07 FALSE TRUE
ENST00000462211 ENSG00000125247 HEK293_OSMI2_2hA HEK293_TMG_2hB TMTC4 protein_coding processed_transcript 7.709052 6.735621 8.864212 0.07348854 0.2193565 0.3956679 0.7947033 1.26438091 0.3659350 0.17595531 0.3659350 -1.7612415 0.1133417 0.18800000 0.03936667 -0.14863333 1.112171e-01 1.584942e-07 FALSE TRUE
ENST00000475272 ENSG00000125247 HEK293_OSMI2_2hA HEK293_TMG_2hB TMTC4 protein_coding protein_coding 7.709052 6.735621 8.864212 0.07348854 0.2193565 0.3956679 0.4301991 0.35871173 0.0000000 0.35871173 0.0000000 -5.2044214 0.0527000 0.05433333 0.00000000 -0.05433333 7.710891e-01 1.584942e-07   FALSE
ENST00000489713 ENSG00000125247 HEK293_OSMI2_2hA HEK293_TMG_2hB TMTC4 protein_coding retained_intron 7.709052 6.735621 8.864212 0.07348854 0.2193565 0.3956679 0.3639612 0.35839245 0.3161379 0.08520085 0.0301593 -0.1757615 0.0502000 0.05293333 0.03586667 -0.01706667 5.498204e-01 1.584942e-07 FALSE TRUE
MSTRG.9036.4 ENSG00000125247 HEK293_OSMI2_2hA HEK293_TMG_2hB TMTC4 protein_coding   7.709052 6.735621 8.864212 0.07348854 0.2193565 0.3956679 0.2187418 0.00000000 1.1147410 0.00000000 0.2799096 6.8134490 0.0259625 0.00000000 0.12743333 0.12743333 1.584942e-07 1.584942e-07 FALSE TRUE
MSTRG.9036.5 ENSG00000125247 HEK293_OSMI2_2hA HEK293_TMG_2hB TMTC4 protein_coding   7.709052 6.735621 8.864212 0.07348854 0.2193565 0.3956679 0.7716255 0.08683983 0.8244235 0.05305205 0.4754213 3.1071073 0.0854125 0.01273333 0.09253333 0.07980000 6.387497e-01 1.584942e-07 FALSE TRUE
MSTRG.9036.7 ENSG00000125247 HEK293_OSMI2_2hA HEK293_TMG_2hB TMTC4 protein_coding   7.709052 6.735621 8.864212 0.07348854 0.2193565 0.3956679 0.7930974 1.04713456 0.4395341 0.44801370 0.4395341 -1.2336564 0.1250042 0.15520000 0.04730000 -0.10790000 2.029400e-01 1.584942e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000125247 E001 4.3908986 0.0123842545 2.544843e-01 3.911793e-01 13 100603625 100603926 302 - 0.646 0.816 0.694
ENSG00000125247 E002 68.1120229 0.0137121559 8.124866e-02 1.615042e-01 13 100603927 100604298 372 - 1.775 1.909 0.451
ENSG00000125247 E003 17.2951729 0.0012823556 1.645617e-02 4.374067e-02 13 100604299 100604300 2 - 1.159 1.359 0.702
ENSG00000125247 E004 37.7668951 0.0007786302 2.982432e-02 7.161832e-02 13 100604301 100604390 90 - 1.530 1.657 0.434
ENSG00000125247 E005 51.9892615 0.0036005344 3.059977e-02 7.314500e-02 13 100604391 100604705 315 - 1.664 1.791 0.429
ENSG00000125247 E006 27.0511038 0.0151525159 7.766023e-01 8.561244e-01 13 100604706 100604870 165 - 1.432 1.464 0.111
ENSG00000125247 E007 38.2193639 0.0097548393 4.216344e-03 1.374778e-02 13 100604871 100605040 170 - 1.683 1.479 -0.695
ENSG00000125247 E008 41.1930001 0.0330490960 8.522470e-02 1.677757e-01 13 100605041 100605142 102 - 1.700 1.540 -0.546
ENSG00000125247 E009 31.6823690 0.0008203947 1.594834e-02 4.261567e-02 13 100606358 100606427 70 - 1.585 1.442 -0.490
ENSG00000125247 E010 41.6484312 0.0008196523 1.592616e-03 5.936026e-03 13 100612398 100612510 113 - 1.708 1.540 -0.570
ENSG00000125247 E011 38.7434514 0.0005986226 8.968183e-06 6.028654e-05 13 100614316 100614430 115 - 1.703 1.454 -0.851
ENSG00000125247 E012 5.0035872 0.1049830548 9.429124e-03 2.735348e-02 13 100624797 100624909 113 - 0.477 0.973 2.068
ENSG00000125247 E013 5.8463072 0.0365643947 4.664701e-03 1.499701e-02 13 100624910 100624968 59 - 0.586 1.021 1.734
ENSG00000125247 E014 13.0887224 0.0090529421 6.547793e-03 2.004881e-02 13 100624969 100625452 484 - 1.006 1.287 1.006
ENSG00000125247 E015 8.2101400 0.0024735629 3.808655e-04 1.700738e-03 13 100625453 100625534 82 - 0.723 1.133 1.554
ENSG00000125247 E016 61.4673423 0.0004625388 6.551099e-01 7.650683e-01 13 100625535 100625676 142 - 1.805 1.791 -0.050
ENSG00000125247 E017 51.1846082 0.0058309578 7.327028e-02 1.487477e-01 13 100625785 100625892 108 - 1.662 1.769 0.364
ENSG00000125247 E018 50.2721575 0.0037801494 5.435525e-02 1.168689e-01 13 100626071 100626150 80 - 1.653 1.761 0.366
ENSG00000125247 E019 61.9067516 0.0174577346 3.069933e-01 4.491664e-01 13 100634805 100634936 132 - 1.763 1.835 0.243
ENSG00000125247 E020 0.8232405 0.1637664061 3.450888e-01 4.891732e-01 13 100634937 100635023 87 - 0.332 0.138 -1.613
ENSG00000125247 E021 39.2930509 0.0072272324 7.050084e-01 8.034464e-01 13 100635024 100635064 41 - 1.595 1.620 0.086
ENSG00000125247 E022 55.0567767 0.0004434994 6.118907e-01 7.309329e-01 13 100635065 100635195 131 - 1.763 1.744 -0.063
ENSG00000125247 E023 0.2214452 0.0411681124 3.796420e-01   13 100635679 100635779 101 - 0.000 0.137 10.973
ENSG00000125247 E024 59.9342354 0.0005546548 5.472370e-01 6.773185e-01 13 100636532 100636734 203 - 1.799 1.777 -0.075
ENSG00000125247 E025 51.3037876 0.0056396040 3.285840e-01 4.720895e-01 13 100637538 100637702 165 - 1.745 1.696 -0.167
ENSG00000125247 E026 1.1081710 0.1078370221 6.891436e-02 1.415734e-01 13 100637703 100637929 227 - 0.109 0.458 2.710
ENSG00000125247 E027 49.6979069 0.0043449751 1.154025e-01 2.134296e-01 13 100637930 100638022 93 - 1.747 1.663 -0.285
ENSG00000125247 E028 5.0229897 0.0031704133 2.070873e-02 5.297407e-02 13 100638023 100638808 786 - 0.911 0.598 -1.270
ENSG00000125247 E029 44.0171449 0.0008121442 1.780415e-02 4.671538e-02 13 100642211 100642311 101 - 1.713 1.592 -0.408
ENSG00000125247 E030 36.0456375 0.0005920827 6.352517e-01 7.495938e-01 13 100656381 100656468 88 - 1.585 1.563 -0.075
ENSG00000125247 E031 57.4497558 0.0026299767 7.053275e-01 8.037250e-01 13 100662964 100663119 156 - 1.775 1.758 -0.058
ENSG00000125247 E032 43.2140381 0.0018661415 6.217554e-01 7.386926e-01 13 100663120 100663180 61 - 1.631 1.661 0.103
ENSG00000125247 E033 50.8330712 0.0058937765 2.779825e-01 4.176194e-01 13 100664221 100664336 116 - 1.683 1.747 0.216
ENSG00000125247 E034 0.1451727 0.0432116451 6.258496e-01   13 100665969 100666107 139 - 0.109 0.000 -10.494
ENSG00000125247 E035 0.4782907 0.0217681645 5.300321e-02 1.144908e-01 13 100668362 100668578 217 - 0.000 0.324 12.551
ENSG00000125247 E036 66.9323950 0.0024614482 6.596979e-01 7.684727e-01 13 100668579 100668794 216 - 1.822 1.844 0.074
ENSG00000125247 E037 0.9943357 0.0132917849 6.081413e-01 7.279839e-01 13 100670283 100670359 77 - 0.331 0.241 -0.624
ENSG00000125247 E038 36.9482715 0.0186521415 5.825287e-01 7.068770e-01 13 100670360 100670569 210 - 1.603 1.548 -0.190
ENSG00000125247 E039 1.1823829 0.0873914604 9.954298e-01 1.000000e+00 13 100670570 100670735 166 - 0.331 0.326 -0.030
ENSG00000125247 E040 0.5911862 0.0184777668 6.563762e-02 1.361038e-01 13 100672691 100672791 101 - 0.331 0.000 -12.495
ENSG00000125247 E041 16.9134254 0.0424826577 6.428882e-01 7.555629e-01 13 100674744 100674879 136 - 1.285 1.225 -0.209
ENSG00000125247 E042 1.3713618 0.0446485846 9.953023e-01 1.000000e+00 13 100674940 100675093 154 - 0.386 0.393 0.042