ENSG00000124356

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000409707 ENSG00000124356 HEK293_OSMI2_2hA HEK293_TMG_2hB STAMBP protein_coding protein_coding 24.60326 19.15528 31.30838 0.8781496 0.7020411 0.7085144 3.118720 0.2242375 5.1469062 0.12124764 1.31146969 4.4604617 0.10319167 0.01193333 0.16323333 0.15130000 0.004194557 2.440646e-05 FALSE TRUE
ENST00000682157 ENSG00000124356 HEK293_OSMI2_2hA HEK293_TMG_2hB STAMBP protein_coding protein_coding 24.60326 19.15528 31.30838 0.8781496 0.7020411 0.7085144 9.685986 9.2505237 11.3806168 0.46235551 0.71759941 0.2986802 0.39510833 0.48376667 0.36456667 -0.11920000 0.094068362 2.440646e-05 FALSE TRUE
ENST00000682851 ENSG00000124356 HEK293_OSMI2_2hA HEK293_TMG_2hB STAMBP protein_coding protein_coding 24.60326 19.15528 31.30838 0.8781496 0.7020411 0.7085144 1.053104 0.9829243 0.7934247 0.98292427 0.15660364 -0.3055209 0.05132083 0.04733333 0.02560000 -0.02173333 0.499601990 2.440646e-05 FALSE TRUE
ENST00000682998 ENSG00000124356 HEK293_OSMI2_2hA HEK293_TMG_2hB STAMBP protein_coding protein_coding 24.60326 19.15528 31.30838 0.8781496 0.7020411 0.7085144 1.278568 0.6986473 2.1097603 0.05354259 0.03861989 1.5807615 0.05378333 0.03643333 0.06740000 0.03096667 0.004426394 2.440646e-05 FALSE TRUE
ENST00000683518 ENSG00000124356 HEK293_OSMI2_2hA HEK293_TMG_2hB STAMBP protein_coding nonsense_mediated_decay 24.60326 19.15528 31.30838 0.8781496 0.7020411 0.7085144 2.941007 3.0720534 2.4982423 0.35905924 0.43220497 -0.2972151 0.12015417 0.16273333 0.08043333 -0.08230000 0.084052873 2.440646e-05 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000124356 E001 0.0000000       2 73828916 73828917 2 +      
ENSG00000124356 E002 0.0000000       2 73828918 73828921 4 +      
ENSG00000124356 E003 0.5954526 0.0172671820 8.164361e-02 1.621276e-01 2 73828922 73828929 8 + 0.315 0.000 -12.671
ENSG00000124356 E004 1.4027985 0.0105918470 2.392161e-01 3.732037e-01 2 73828930 73828939 10 + 0.457 0.254 -1.225
ENSG00000124356 E005 1.5479712 0.0092169554 1.621445e-01 2.779154e-01 2 73828940 73828942 3 + 0.495 0.254 -1.417
ENSG00000124356 E006 3.1281945 0.0047793479 1.384209e-01 2.458923e-01 2 73828943 73828960 18 + 0.698 0.476 -1.002
ENSG00000124356 E007 3.4550716 0.0053458018 1.869395e-01 3.098842e-01 2 73828961 73828961 1 + 0.721 0.530 -0.832
ENSG00000124356 E008 4.5161280 0.0708456000 6.531648e-01 7.637180e-01 2 73828962 73828966 5 + 0.762 0.701 -0.250
ENSG00000124356 E009 6.9852828 0.0818298096 3.487684e-01 4.929984e-01 2 73828967 73828973 7 + 0.953 0.821 -0.504
ENSG00000124356 E010 19.3393974 0.0212213307 1.603538e-02 4.281383e-02 2 73828974 73828975 2 + 1.397 1.153 -0.856
ENSG00000124356 E011 20.8925628 0.0171431345 4.078851e-02 9.249221e-02 2 73828976 73828977 2 + 1.410 1.220 -0.663
ENSG00000124356 E012 22.5522929 0.0074836478 3.569210e-02 8.298777e-02 2 73828978 73828982 5 + 1.432 1.269 -0.569
ENSG00000124356 E013 31.6836893 0.0036249616 3.166551e-02 7.519726e-02 2 73828983 73828986 4 + 1.567 1.436 -0.450
ENSG00000124356 E014 32.3813369 0.0065789918 5.598964e-02 1.196772e-01 2 73828987 73828988 2 + 1.573 1.448 -0.427
ENSG00000124356 E015 32.8919947 0.0109116051 1.027901e-01 1.947494e-01 2 73828989 73828989 1 + 1.576 1.461 -0.395
ENSG00000124356 E016 33.4790282 0.0091898841 6.341824e-02 1.323900e-01 2 73828990 73828990 1 + 1.588 1.461 -0.437
ENSG00000124356 E017 38.9813288 0.0100669580 2.086996e-02 5.331094e-02 2 73828991 73828996 6 + 1.665 1.506 -0.542
ENSG00000124356 E018 14.1827378 0.0245575439 2.284598e-02 5.742018e-02 2 73828997 73829014 18 + 1.274 1.010 -0.949
ENSG00000124356 E019 15.3661648 0.0229272818 4.697417e-02 1.037820e-01 2 73829015 73829022 8 + 1.292 1.073 -0.781
ENSG00000124356 E020 18.0900613 0.0179629105 6.557657e-02 1.360075e-01 2 73829023 73829027 5 + 1.348 1.165 -0.643
ENSG00000124356 E021 18.8618059 0.0235666015 9.710838e-02 1.860565e-01 2 73829028 73829030 3 + 1.363 1.188 -0.613
ENSG00000124356 E022 19.0090549 0.0259743007 9.809103e-02 1.876090e-01 2 73829031 73829032 2 + 1.368 1.188 -0.629
ENSG00000124356 E023 19.8508431 0.0236093231 1.310765e-01 2.356474e-01 2 73829033 73829036 4 + 1.377 1.221 -0.548
ENSG00000124356 E024 27.4902566 0.0020152557 7.708549e-02 1.548207e-01 2 73829037 73829070 34 + 1.496 1.389 -0.367
ENSG00000124356 E025 13.8535493 0.0012505574 3.146401e-01 4.573732e-01 2 73829071 73829098 28 + 1.122 1.229 0.380
ENSG00000124356 E026 22.6467773 0.0013087153 2.733230e-01 4.123351e-01 2 73829099 73829245 147 + 1.332 1.429 0.337
ENSG00000124356 E027 19.0247863 0.0018201486 1.489204e-01 2.602175e-01 2 73829246 73829404 159 + 1.236 1.367 0.459
ENSG00000124356 E028 46.7506383 0.0008307291 1.656879e-03 6.143879e-03 2 73829405 73829510 106 + 1.736 1.585 -0.514
ENSG00000124356 E029 11.7803381 0.0031545860 6.612403e-01 7.697318e-01 2 73829511 73830844 1334 + 1.113 1.085 -0.101
ENSG00000124356 E030 75.1060285 0.0004367431 9.222886e-04 3.692975e-03 2 73830845 73830856 12 + 1.930 1.808 -0.409
ENSG00000124356 E031 190.6875132 0.0031644333 3.426298e-04 1.550687e-03 2 73830857 73831050 194 + 2.330 2.211 -0.398
ENSG00000124356 E032 96.2594739 0.0003296459 2.113117e-04 1.012248e-03 2 73831051 73831059 9 + 2.036 1.917 -0.400
ENSG00000124356 E033 0.0000000       2 73843217 73843401 185 +      
ENSG00000124356 E034 0.0000000       2 73843402 73843439 38 +      
ENSG00000124356 E035 0.4417471 0.6398210588 4.045260e-01 5.482395e-01 2 73843440 73844060 621 + 0.254 0.000 -12.251
ENSG00000124356 E036 1.0370979 0.2908026689 6.045785e-01 7.250556e-01 2 73844061 73844633 573 + 0.367 0.249 -0.782
ENSG00000124356 E037 0.6674587 0.0284862973 5.166704e-01 6.512159e-01 2 73844634 73844812 179 + 0.255 0.146 -1.000
ENSG00000124356 E038 163.0187048 0.0027313462 1.489826e-03 5.603397e-03 2 73844813 73844888 76 + 2.257 2.152 -0.350
ENSG00000124356 E039 5.0607916 0.0602167416 5.764982e-01 7.019132e-01 2 73844889 73845036 148 + 0.819 0.730 -0.354
ENSG00000124356 E040 0.2987644 0.0274312143 3.227014e-01   2 73845037 73845166 130 + 0.185 0.000 -11.669
ENSG00000124356 E041 89.9104133 0.0097995309 5.398368e-02 1.162389e-01 2 73845167 73845175 9 + 2.001 1.892 -0.367
ENSG00000124356 E042 124.6663194 0.0051353993 3.333630e-02 7.845489e-02 2 73845176 73845262 87 + 2.135 2.048 -0.292
ENSG00000124356 E043 0.4375944 0.0252710478 1.594796e-01 2.744260e-01 2 73845263 73845621 359 + 0.255 0.000 -12.253
ENSG00000124356 E044 49.1635508 0.0005139384 4.580231e-02 1.016734e-01 2 73847387 73847389 3 + 1.738 1.655 -0.282
ENSG00000124356 E045 218.4655553 0.0035588114 9.955677e-01 1.000000e+00 2 73847390 73847572 183 + 2.333 2.350 0.057
ENSG00000124356 E046 172.4549321 0.0003640113 1.151066e-01 2.129952e-01 2 73847573 73847662 90 + 2.211 2.273 0.206
ENSG00000124356 E047 183.3670543 0.0007794898 4.139337e-01 5.573493e-01 2 73847663 73847753 91 + 2.247 2.289 0.138
ENSG00000124356 E048 15.7971463 0.0151719985 2.495658e-03 8.750760e-03 2 73847754 73849329 1576 + 1.337 1.037 -1.069
ENSG00000124356 E049 1.4038295 0.0096506305 6.369333e-01 7.508765e-01 2 73849330 73849362 33 + 0.414 0.341 -0.418
ENSG00000124356 E050 199.6318238 0.0007318852 9.809792e-01 9.921181e-01 2 73849363 73849487 125 + 2.293 2.310 0.054
ENSG00000124356 E051 1.0632465 0.1146382882 2.519021e-01 3.882086e-01 2 73849488 73849578 91 + 0.185 0.417 1.598
ENSG00000124356 E052 213.2013545 0.0002111209 5.443846e-01 6.748689e-01 2 73850376 73850513 138 + 2.316 2.348 0.110
ENSG00000124356 E053 0.1515154 0.0439452194 6.876520e-01   2 73852725 73852820 96 + 0.102 0.000 -10.669
ENSG00000124356 E054 92.1079382 0.0003027608 5.948436e-11 1.089016e-09 2 73853035 73855621 2587 + 2.058 1.824 -0.786
ENSG00000124356 E055 22.8742978 0.0023078536 2.835795e-01 4.237219e-01 2 73855622 73856110 489 + 1.406 1.344 -0.215
ENSG00000124356 E056 5.9731107 0.0038110025 3.628698e-01 5.072766e-01 2 73858192 73859253 1062 + 0.782 0.912 0.504
ENSG00000124356 E057 221.2337111 0.0010977267 8.052922e-02 1.603787e-01 2 73859254 73859366 113 + 2.316 2.381 0.217
ENSG00000124356 E058 225.1409982 0.0011299880 3.977328e-03 1.307898e-02 2 73860052 73860151 100 + 2.308 2.405 0.324
ENSG00000124356 E059 3.6375904 0.1873841932 4.896018e-01 6.270057e-01 2 73860534 73860589 56 + 0.592 0.753 0.680
ENSG00000124356 E060 1.2262909 0.0454488011 3.644563e-01 5.088148e-01 2 73861545 73861661 117 + 0.414 0.254 -1.007
ENSG00000124356 E061 120.4786889 0.0002502411 3.361945e-03 1.132748e-02 2 73862203 73862210 8 + 2.031 2.143 0.377
ENSG00000124356 E062 205.0918106 0.0005408773 3.492835e-05 2.042492e-04 2 73862211 73862304 94 + 2.252 2.378 0.421
ENSG00000124356 E063 401.3112374 0.0037926446 4.212165e-11 7.916487e-10 2 73862305 73862945 641 + 2.486 2.715 0.765
ENSG00000124356 E064 177.3739623 0.0218757628 6.454157e-02 1.342852e-01 2 73862946 73864637 1692 + 2.297 2.186 -0.368
ENSG00000124356 E065 385.1935013 0.0190338193 1.004225e-01 1.911151e-01 2 73864638 73867174 2537 + 2.518 2.657 0.462
ENSG00000124356 E066 0.5922303 0.0179946855 5.090325e-01 6.443843e-01 2 73869707 73869788 82 + 0.255 0.145 -1.004
ENSG00000124356 E067 2.3959898 0.0059219003 1.826994e-01 3.045693e-01 2 73869789 73870142 354 + 0.622 0.413 -1.004
ENSG00000124356 E068 15.3935306 0.0011673690 7.727003e-01 8.532876e-01 2 73870143 73870352 210 + 1.216 1.208 -0.028
ENSG00000124356 E069 0.3697384 0.0250727403 1.186779e-01 2.180589e-01 2 73871793 73871954 162 + 0.000 0.254 12.559
ENSG00000124356 E070 4.2769496 0.0042340772 7.293373e-01 8.215306e-01 2 73871955 73872417 463 + 0.698 0.762 0.259
ENSG00000124356 E071 14.6101934 0.0011967972 2.895814e-01 4.302771e-01 2 73873352 73873659 308 + 1.139 1.249 0.390