ENSG00000123607

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000243344 ENSG00000123607 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC21B protein_coding protein_coding 4.400125 0.9330476 6.973958 0.1779935 0.08607692 2.888643 1.22306649 0.57597273 1.47497069 0.07710432 0.07289941 1.341529 0.39145000 0.6355333 0.211833333 -0.42370000 7.037679e-08 2.655341e-14 FALSE TRUE
ENST00000392695 ENSG00000123607 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC21B protein_coding nonsense_mediated_decay 4.400125 0.9330476 6.973958 0.1779935 0.08607692 2.888643 0.04875073 0.14625325 0.06236773 0.07343487 0.06236773 -1.110468 0.03318750 0.1317000 0.008866667 -0.12283333 1.576357e-01 2.655341e-14 TRUE TRUE
ENST00000681502 ENSG00000123607 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC21B protein_coding nonsense_mediated_decay 4.400125 0.9330476 6.973958 0.1779935 0.08607692 2.888643 0.18603044 0.06594464 0.30054158 0.01527786 0.01313781 2.031766 0.05795833 0.0712000 0.043166667 -0.02803333 5.305597e-01 2.655341e-14 TRUE TRUE
MSTRG.19436.26 ENSG00000123607 HEK293_OSMI2_2hA HEK293_TMG_2hB TTC21B protein_coding   4.400125 0.9330476 6.973958 0.1779935 0.08607692 2.888643 2.08455286 0.00000000 3.53487328 0.00000000 0.20397477 8.469590 0.29638333 0.0000000 0.506433333 0.50643333 2.655341e-14 2.655341e-14 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000123607 E001 0.0000000       2 165857475 165857477 3 -      
ENSG00000123607 E002 0.0000000       2 165857478 165857487 10 -      
ENSG00000123607 E003 0.1472490 0.0429684963 8.194090e-01   2 165857488 165857492 5 - 0.051 0.000 -8.316
ENSG00000123607 E004 0.1472490 0.0429684963 8.194090e-01   2 165857493 165857495 3 - 0.051 0.000 -9.334
ENSG00000123607 E005 0.1472490 0.0429684963 8.194090e-01   2 165857496 165857521 26 - 0.051 0.000 -9.334
ENSG00000123607 E006 1.3264983 0.0134136322 3.641474e-01 5.085258e-01 2 165857522 165857554 33 - 0.241 0.433 1.204
ENSG00000123607 E007 1.9564062 0.0075059068 2.653219e-01 4.033644e-01 2 165857555 165857614 60 - 0.325 0.552 1.203
ENSG00000123607 E008 3.0592692 0.0383680640 3.603256e-01 5.046497e-01 2 165858215 165858372 158 - 0.456 0.648 0.892
ENSG00000123607 E009 1.5769891 0.2299421310 5.296032e-01 6.623616e-01 2 165858373 165858404 32 - 0.298 0.438 0.815
ENSG00000123607 E010 1.1458512 0.0114492342 2.794549e-01 4.192084e-01 2 165858405 165861952 3548 - 0.209 0.433 1.465
ENSG00000123607 E011 0.9169173 0.0703905506 2.132015e-01 3.423175e-01 2 165862944 165863065 122 - 0.175 0.432 1.782
ENSG00000123607 E012 0.5159433 0.2200174121 3.532121e-01 4.974388e-01 2 165864984 165865077 94 - 0.096 0.271 1.809
ENSG00000123607 E013 0.0000000       2 165867381 165867392 12 -      
ENSG00000123607 E014 4.3401885 0.0070271467 2.547874e-02 6.286626e-02 2 165867393 165868545 1153 - 0.526 0.894 1.539
ENSG00000123607 E015 4.2962725 0.0038237581 7.172569e-01 8.127021e-01 2 165868546 165869906 1361 - 0.613 0.552 -0.273
ENSG00000123607 E016 5.0325296 0.0033226014 7.156336e-01 8.115083e-01 2 165869907 165870796 890 - 0.650 0.722 0.300
ENSG00000123607 E017 7.6421278 0.0046756023 8.400438e-01 9.001090e-01 2 165870797 165871020 224 - 0.810 0.787 -0.089
ENSG00000123607 E018 23.7977112 0.0008181454 5.926476e-02 1.253815e-01 2 165871021 165873361 2341 - 1.278 1.083 -0.693
ENSG00000123607 E019 13.4064066 0.0012702081 1.528457e-01 2.655171e-01 2 165873362 165873911 550 - 0.991 1.167 0.636
ENSG00000123607 E020 13.9652095 0.1498731126 8.500405e-02 1.674119e-01 2 165873912 165874220 309 - 0.952 1.363 1.473
ENSG00000123607 E021 17.4288019 0.0568914982 9.012143e-03 2.630857e-02 2 165874221 165874509 289 - 1.048 1.431 1.353
ENSG00000123607 E022 23.3402949 0.0022595426 2.638667e-04 1.232343e-03 2 165874510 165874678 169 - 1.176 1.502 1.136
ENSG00000123607 E023 33.4578765 0.0006592090 1.556627e-05 9.896584e-05 2 165874679 165874832 154 - 1.329 1.649 1.101
ENSG00000123607 E024 1.1134972 0.1074896814 6.949192e-02 1.425173e-01 2 165874833 165876164 1332 - 0.175 0.551 2.363
ENSG00000123607 E025 25.6966997 0.0284423982 1.287884e-01 2.324693e-01 2 165876165 165876232 68 - 1.257 1.436 0.621
ENSG00000123607 E026 4.1500676 0.0039923959 7.798903e-01 8.585102e-01 2 165876233 165878742 2510 - 0.585 0.645 0.262
ENSG00000123607 E027 0.2966881 0.0270821776 1.000000e+00   2 165878743 165878785 43 - 0.096 0.000 -10.295
ENSG00000123607 E028 0.2924217 0.0290785164 1.000000e+00   2 165878786 165878872 87 - 0.096 0.000 -10.296
ENSG00000123607 E029 3.4216498 0.0070932340 9.889463e-01 9.971150e-01 2 165878873 165879967 1095 - 0.541 0.552 0.048
ENSG00000123607 E030 1.7863577 0.0087325637 1.379996e-01 2.452911e-01 2 165879968 165880678 711 - 0.396 0.000 -12.716
ENSG00000123607 E031 27.8062597 0.0063732973 6.282067e-02 1.314104e-01 2 165880679 165880799 121 - 1.289 1.465 0.609
ENSG00000123607 E032 0.0000000       2 165883790 165883793 4 -      
ENSG00000123607 E033 39.1824264 0.0006543573 1.900686e-02 4.934891e-02 2 165883794 165884015 222 - 1.428 1.606 0.609
ENSG00000123607 E034 14.3121497 0.0051418292 2.405212e-01 3.747699e-01 2 165884016 165884018 3 - 1.018 1.167 0.540
ENSG00000123607 E035 0.2987644 0.0271747253 1.000000e+00   2 165884019 165884586 568 - 0.096 0.000 -10.295
ENSG00000123607 E036 40.5386226 0.0097782397 6.480646e-02 1.347254e-01 2 165888279 165888474 196 - 1.440 1.609 0.580
ENSG00000123607 E037 36.5468255 0.0006646066 6.701404e-03 2.044974e-02 2 165890479 165890640 162 - 1.388 1.596 0.717
ENSG00000123607 E038 0.1515154 0.0427842573 8.192760e-01   2 165890641 165890641 1 - 0.051 0.000 -9.335
ENSG00000123607 E039 25.6411790 0.0099375280 6.057155e-01 7.260570e-01 2 165890838 165890945 108 - 1.269 1.335 0.231
ENSG00000123607 E040 11.2098141 0.0124890317 3.952271e-01 5.390443e-01 2 165890946 165890948 3 - 0.926 1.053 0.471
ENSG00000123607 E041 14.5889799 0.0011945839 4.026474e-01 5.464169e-01 2 165890949 165890988 40 - 1.033 1.141 0.390
ENSG00000123607 E042 6.9302791 0.0024750813 1.696177e-01 2.877032e-01 2 165890989 165892047 1059 - 0.727 0.939 0.828
ENSG00000123607 E043 2.8978647 0.0096183653 2.872658e-01 4.277523e-01 2 165892048 165892300 253 - 0.437 0.646 0.980
ENSG00000123607 E044 6.3759797 0.0065308236 4.602030e-01 6.002584e-01 2 165892301 165893040 740 - 0.717 0.844 0.507
ENSG00000123607 E045 16.5405972 0.0011705540 7.765311e-01 8.560934e-01 2 165893041 165894824 1784 - 1.098 1.141 0.154
ENSG00000123607 E046 0.5954526 0.0183731672 8.049551e-01 8.758871e-01 2 165898627 165898685 59 - 0.175 0.000 -11.246
ENSG00000123607 E047 13.8500113 0.0108003881 2.362037e-01 3.697791e-01 2 165898686 165898694 9 - 1.053 0.895 -0.587
ENSG00000123607 E048 20.1307921 0.0009954369 1.642004e-01 2.806351e-01 2 165898695 165898767 73 - 1.201 1.052 -0.536
ENSG00000123607 E049 22.6713337 0.0008767709 5.850502e-01 7.088423e-01 2 165899770 165899880 111 - 1.236 1.191 -0.159
ENSG00000123607 E050 0.2903454 0.3051729731 1.000000e+00   2 165899881 165899911 31 - 0.096 0.000 -10.429
ENSG00000123607 E051 26.4378316 0.0007587956 5.749867e-01 7.007211e-01 2 165901722 165901910 189 - 1.300 1.258 -0.149
ENSG00000123607 E052 0.0000000       2 165901911 165902477 567 -      
ENSG00000123607 E053 19.7412263 0.0010065251 9.424462e-01 9.678629e-01 2 165907678 165907784 107 - 1.173 1.191 0.067
ENSG00000123607 E054 0.0000000       2 165910857 165911326 470 -      
ENSG00000123607 E055 26.9031138 0.0007359861 5.177721e-01 6.521092e-01 2 165911327 165911465 139 - 1.308 1.258 -0.177
ENSG00000123607 E056 26.8794229 0.0126281259 3.317074e-01 4.753466e-01 2 165912514 165912624 111 - 1.314 1.216 -0.344
ENSG00000123607 E057 18.6693609 0.0017080688 8.261223e-01 8.905818e-01 2 165913574 165913646 73 - 1.154 1.141 -0.048
ENSG00000123607 E058 36.2596287 0.0006064686 1.068232e-01 2.008608e-01 2 165915201 165915439 239 - 1.443 1.315 -0.445
ENSG00000123607 E059 35.4227357 0.0011955802 8.665138e-02 1.700401e-01 2 165917257 165917481 225 - 1.438 1.297 -0.489
ENSG00000123607 E060 25.8513312 0.0098280524 2.044694e-02 5.243040e-02 2 165919276 165919433 158 - 1.318 1.052 -0.947
ENSG00000123607 E061 0.5943067 0.0257826662 4.941571e-01 6.311372e-01 2 165923779 165924548 770 - 0.137 0.268 1.199
ENSG00000123607 E062 20.7604949 0.0100601182 8.910755e-02 1.737692e-01 2 165924549 165924678 130 - 1.220 1.018 -0.726
ENSG00000123607 E063 0.0000000       2 165928717 165929134 418 -      
ENSG00000123607 E064 27.3883651 0.0007728746 1.407320e-01 2.490147e-01 2 165929135 165929335 201 - 1.326 1.191 -0.475
ENSG00000123607 E065 21.8073017 0.0046513642 4.849267e-02 1.064961e-01 2 165929650 165929747 98 - 1.243 1.018 -0.808
ENSG00000123607 E066 33.4633994 0.0006702374 1.197932e-02 3.348216e-02 2 165930172 165930364 193 - 1.420 1.191 -0.799
ENSG00000123607 E067 0.1515154 0.0427842573 8.192760e-01   2 165930365 165930517 153 - 0.051 0.000 -9.335
ENSG00000123607 E068 1.0371996 0.0190521361 3.646303e-01 5.089789e-01 2 165931112 165931740 629 - 0.271 0.000 -12.006
ENSG00000123607 E069 0.2944980 0.3461309664 1.000000e+00   2 165931741 165931757 17 - 0.096 0.000 -10.440
ENSG00000123607 E070 21.9552536 0.0008093336 7.377311e-02 1.495585e-01 2 165931758 165931856 99 - 1.243 1.051 -0.684
ENSG00000123607 E071 20.9773892 0.0009170369 1.082264e-01 2.029173e-01 2 165932973 165933057 85 - 1.224 1.051 -0.618
ENSG00000123607 E072 0.9117205 0.0494431734 7.894900e-01 8.652766e-01 2 165933058 165933366 309 - 0.209 0.268 0.466
ENSG00000123607 E073 5.8249749 0.0601895815 9.486619e-01 9.718229e-01 2 165933367 165936920 3554 - 0.706 0.724 0.073
ENSG00000123607 E074 0.8964071 0.1711571457 5.249066e-01 6.583294e-01 2 165936921 165936991 71 - 0.242 0.000 -11.890
ENSG00000123607 E075 0.6696487 0.0216382354 4.946998e-01 6.316429e-01 2 165936992 165937067 76 - 0.137 0.269 1.203
ENSG00000123607 E076 0.8825757 0.0147271757 7.890279e-01 8.649402e-01 2 165937068 165937671 604 - 0.209 0.268 0.463
ENSG00000123607 E077 26.3467537 0.0018772143 4.572132e-03 1.474268e-02 2 165941027 165941184 158 - 1.326 1.017 -1.102
ENSG00000123607 E078 26.3143877 0.0008224451 1.645868e-03 6.107759e-03 2 165943219 165943341 123 - 1.329 0.980 -1.249
ENSG00000123607 E079 29.4805329 0.0006672600 4.000010e-06 2.910211e-05 2 165945524 165945690 167 - 1.392 0.844 -1.984
ENSG00000123607 E080 0.0000000       2 165946620 165946668 49 -      
ENSG00000123607 E081 0.1515154 0.0427842573 8.192760e-01   2 165949111 165949393 283 - 0.051 0.000 -9.335
ENSG00000123607 E082 23.3050360 0.0007954035 1.980212e-02 5.106656e-02 2 165949394 165949504 111 - 1.272 1.017 -0.914
ENSG00000123607 E083 21.8734274 0.0009813528 1.394875e-01 2.473214e-01 2 165949595 165949724 130 - 1.236 1.083 -0.547
ENSG00000123607 E084 11.2836636 0.0199542345 4.260269e-02 9.582245e-02 2 165953685 165953851 167 - 0.991 0.646 -1.358