ENSG00000123384

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000243077 ENSG00000123384 HEK293_OSMI2_2hA HEK293_TMG_2hB LRP1 protein_coding protein_coding 3.278291 4.003074 2.211735 0.2089208 0.1673062 -0.8530208 1.7099120 1.6540198 1.56918379 0.2907484 0.33457258 -0.07549353 0.5523167 0.4081 0.69533333 0.2872333 1.591281e-01 1.944434e-05 FALSE TRUE
ENST00000556356 ENSG00000123384 HEK293_OSMI2_2hA HEK293_TMG_2hB LRP1 protein_coding retained_intron 3.278291 4.003074 2.211735 0.2089208 0.1673062 -0.8530208 0.8856239 1.8441180 0.09923837 0.2965138 0.05374266 -4.08518157 0.2178625 0.4614 0.04343333 -0.4179667 1.944434e-05 1.944434e-05 FALSE TRUE
MSTRG.7491.4 ENSG00000123384 HEK293_OSMI2_2hA HEK293_TMG_2hB LRP1 protein_coding   3.278291 4.003074 2.211735 0.2089208 0.1673062 -0.8530208 0.4435671 0.3173618 0.51137501 0.3173618 0.26713286 0.67143526 0.1592792 0.0835 0.24776667 0.1642667 5.259335e-01 1.944434e-05 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000123384 E001 0.0000000       12 57128483 57128492 10 +      
ENSG00000123384 E002 0.5181333 0.0209265132 3.953837e-01 5.391898e-01 12 57128493 57128715 223 + 0.242 0.109 -1.385
ENSG00000123384 E003 3.3405422 0.0057692767 1.764089e-03 6.485190e-03 12 57128716 57128908 193 + 0.842 0.385 -2.064
ENSG00000123384 E004 5.5872938 0.0029843329 3.021148e-05 1.796445e-04 12 57128909 57129031 123 + 1.043 0.516 -2.141
ENSG00000123384 E005 6.4091088 0.1115492499 1.214970e-02 3.389076e-02 12 57138459 57138581 123 + 1.057 0.631 -1.667
ENSG00000123384 E006 8.2086123 0.0362504634 6.512525e-03 1.995404e-02 12 57141374 57141511 138 + 1.123 0.772 -1.318
ENSG00000123384 E007 9.7583582 0.0022324969 1.001211e-04 5.223949e-04 12 57143679 57143798 120 + 1.211 0.826 -1.421
ENSG00000123384 E008 10.3777536 0.0042556789 4.993961e-03 1.591192e-02 12 57144972 57145100 129 + 1.180 0.910 -0.987
ENSG00000123384 E009 17.2124609 0.0144457215 1.046164e-02 2.988942e-02 12 57145227 57145490 264 + 1.368 1.143 -0.790
ENSG00000123384 E010 1.3232125 0.1195010015 1.125907e-01 2.093410e-01 12 57148981 57149679 699 + 0.137 0.473 2.402
ENSG00000123384 E011 0.9598037 0.0437594586 2.019847e-01 3.286869e-01 12 57149680 57150059 380 + 0.137 0.383 1.926
ENSG00000123384 E012 13.9883040 0.0391685011 1.155002e-02 3.246560e-02 12 57154208 57154370 163 + 1.316 1.022 -1.049
ENSG00000123384 E013 11.7524420 0.0022303102 8.178969e-06 5.543166e-05 12 57154479 57154701 223 + 1.292 0.878 -1.505
ENSG00000123384 E014 0.0000000       12 57154702 57155593 892 +      
ENSG00000123384 E015 10.1120050 0.0681707823 1.021570e-04 5.319626e-04 12 57156094 57156283 190 + 1.284 0.709 -2.144
ENSG00000123384 E016 10.5483529 0.0192256777 8.146400e-07 6.895939e-06 12 57156777 57156920 144 + 1.300 0.725 -2.137
ENSG00000123384 E017 14.2352935 0.0017708565 6.959624e-12 1.488294e-10 12 57158402 57158638 237 + 1.438 0.826 -2.214
ENSG00000123384 E018 11.6262885 0.0014519963 2.658023e-08 3.023807e-07 12 57159825 57160005 181 + 1.332 0.807 -1.920
ENSG00000123384 E019 12.8973392 0.0026349742 1.323463e-08 1.594848e-07 12 57160893 57161115 223 + 1.368 0.844 -1.899
ENSG00000123384 E020 11.6723589 0.0014988000 2.701837e-08 3.069594e-07 12 57162317 57162518 202 + 1.332 0.807 -1.920
ENSG00000123384 E021 7.8575915 0.0022067056 8.149762e-07 6.898476e-06 12 57162858 57162983 126 + 1.191 0.645 -2.087
ENSG00000123384 E022 0.1472490 0.0422929053 3.603421e-01   12 57164428 57165804 1377 + 0.137 0.000 -11.703
ENSG00000123384 E023 7.7438805 0.0022762182 1.479983e-06 1.185131e-05 12 57165805 57165945 141 + 1.180 0.645 -2.050
ENSG00000123384 E024 8.4791145 0.0023208766 1.430270e-03 5.408068e-03 12 57166084 57166209 126 + 1.135 0.807 -1.226
ENSG00000123384 E025 0.0000000       12 57166210 57166412 203 +      
ENSG00000123384 E026 7.4545883 0.0191347351 1.131497e-02 3.191666e-02 12 57166930 57167046 117 + 1.072 0.768 -1.152
ENSG00000123384 E027 3.3601471 0.0046200177 7.073467e-02 1.445590e-01 12 57167444 57167444 1 + 0.766 0.515 -1.087
ENSG00000123384 E028 7.6696021 0.0376709514 8.651423e-02 1.698282e-01 12 57167445 57167524 80 + 1.044 0.828 -0.812
ENSG00000123384 E029 0.0000000       12 57168185 57168235 51 +      
ENSG00000123384 E030 10.4493611 0.1067168834 8.656677e-02 1.699146e-01 12 57169140 57169307 168 + 1.182 0.923 -0.944
ENSG00000123384 E031 8.6936508 0.0210026263 1.197154e-02 3.346325e-02 12 57173168 57173350 183 + 1.124 0.828 -1.101
ENSG00000123384 E032 10.4637741 0.0239289510 2.862639e-04 1.324010e-03 12 57173780 57173980 201 + 1.258 0.827 -1.586
ENSG00000123384 E033 13.5263887 0.0012958282 7.199511e-06 4.943193e-05 12 57175460 57175705 246 + 1.339 0.953 -1.386
ENSG00000123384 E034 11.7752666 0.0126684406 4.038931e-03 1.325096e-02 12 57175909 57176106 198 + 1.240 0.955 -1.029
ENSG00000123384 E035 12.7896762 0.0013956823 4.192790e-04 1.848353e-03 12 57177041 57177245 205 + 1.284 0.980 -1.094
ENSG00000123384 E036 11.7004003 0.0014601200 5.396211e-02 1.161987e-01 12 57177427 57177591 165 + 1.180 1.017 -0.590
ENSG00000123384 E037 16.3940905 0.0030384944 4.291297e-02 9.637982e-02 12 57178359 57178603 245 + 1.309 1.158 -0.530
ENSG00000123384 E038 11.2269444 0.0050628344 1.264475e-03 4.858554e-03 12 57178890 57179021 132 + 1.230 0.925 -1.109
ENSG00000123384 E039 16.8303246 0.0013108556 2.903918e-02 7.008245e-02 12 57179329 57179556 228 + 1.324 1.166 -0.556
ENSG00000123384 E040 13.3428886 0.0013429684 1.241795e-01 2.259454e-01 12 57179782 57179956 175 + 1.211 1.093 -0.422
ENSG00000123384 E041 11.9390751 0.0015554170 6.812122e-02 1.402497e-01 12 57180047 57180141 95 + 1.191 1.040 -0.543
ENSG00000123384 E042 14.1995563 0.0012987634 1.100266e-02 3.116798e-02 12 57180330 57180479 150 + 1.284 1.083 -0.716
ENSG00000123384 E043 13.5973242 0.0126069876 1.637200e-02 4.354687e-02 12 57180667 57180807 141 + 1.276 1.051 -0.802
ENSG00000123384 E044 13.4372839 0.0068030101 3.059850e-01 4.481307e-01 12 57181157 57181291 135 + 1.191 1.113 -0.278
ENSG00000123384 E045 12.9118367 0.0013631558 4.061756e-01 5.498264e-01 12 57183379 57183510 132 + 1.158 1.103 -0.198
ENSG00000123384 E046 17.9633467 0.0035503534 1.605515e-01 2.758646e-01 12 57183775 57183909 135 + 1.316 1.222 -0.330
ENSG00000123384 E047 20.4307040 0.0174263636 7.104498e-03 2.149904e-02 12 57184085 57184214 130 + 1.438 1.205 -0.812
ENSG00000123384 E048 20.8665852 0.0052887173 4.201147e-03 1.370673e-02 12 57184326 57184452 127 + 1.432 1.224 -0.726
ENSG00000123384 E049 18.4566566 0.0010878919 2.514923e-02 6.218766e-02 12 57184839 57184990 152 + 1.361 1.207 -0.541
ENSG00000123384 E050 14.3387162 0.0662771491 2.234674e-02 5.639959e-02 12 57185081 57185205 125 + 1.325 1.036 -1.028
ENSG00000123384 E051 26.5236388 0.0065573104 1.731333e-04 8.488283e-04 12 57185531 57185908 378 + 1.565 1.304 -0.901
ENSG00000123384 E052 12.7425048 0.0400557258 5.271290e-01 6.602818e-01 12 57187267 57187368 102 + 1.158 1.105 -0.193
ENSG00000123384 E053 13.3973758 0.0378942573 7.262043e-01 8.192810e-01 12 57187369 57187456 88 + 1.147 1.138 -0.033
ENSG00000123384 E054 17.3839287 0.0010927698 2.173470e-01 3.471934e-01 12 57190805 57191009 205 + 1.292 1.214 -0.275
ENSG00000123384 E055 15.9738143 0.0114513868 5.566563e-02 1.191226e-01 12 57191320 57191512 193 + 1.308 1.150 -0.561
ENSG00000123384 E056 14.1472688 0.0334035008 1.122393e-01 2.088110e-01 12 57192845 57192970 126 + 1.267 1.101 -0.591
ENSG00000123384 E057 17.3770609 0.0012139447 1.804216e-01 3.017144e-01 12 57193176 57193304 129 + 1.301 1.214 -0.304
ENSG00000123384 E058 18.0136661 0.0410438169 4.499169e-02 1.001815e-01 12 57193566 57193685 120 + 1.382 1.165 -0.760
ENSG00000123384 E059 13.7237124 0.0208923270 1.997622e-01 3.259410e-01 12 57193899 57194012 114 + 1.211 1.099 -0.402
ENSG00000123384 E060 11.9571723 0.0419866213 2.870964e-02 6.942137e-02 12 57194354 57194503 150 + 1.239 0.972 -0.963
ENSG00000123384 E061 19.0062138 0.0078138055 1.790830e-02 4.693859e-02 12 57194577 57194699 123 + 1.388 1.208 -0.632
ENSG00000123384 E062 18.5047971 0.0010179347 5.927141e-01 7.152233e-01 12 57194985 57195101 117 + 1.284 1.264 -0.070
ENSG00000123384 E063 17.9987822 0.0369624587 3.646940e-01 5.090304e-01 12 57195271 57195399 129 + 1.293 1.229 -0.223
ENSG00000123384 E064 17.1451809 0.0011087247 1.083559e-01 2.031079e-01 12 57195658 57195780 123 + 1.301 1.191 -0.385
ENSG00000123384 E065 18.7338447 0.0029056082 5.301491e-01 6.628027e-01 12 57195863 57196003 141 + 1.292 1.265 -0.097
ENSG00000123384 E066 20.9592572 0.0009142081 2.263729e-01 3.580578e-01 12 57196087 57196277 191 + 1.249 1.366 0.408
ENSG00000123384 E067 22.8853883 0.0008608443 9.830520e-01 9.934666e-01 12 57196982 57197165 184 + 1.347 1.371 0.085
ENSG00000123384 E068 21.3770634 0.0009214148 1.042392e-01 1.969475e-01 12 57197299 57197384 86 + 1.388 1.290 -0.341
ENSG00000123384 E069 24.8680533 0.0118962987 2.574984e-02 6.342612e-02 12 57197545 57197664 120 + 1.498 1.331 -0.577
ENSG00000123384 E070 30.0971209 0.0127990114 6.042556e-01 7.248473e-01 12 57198156 57198343 188 + 1.493 1.474 -0.065
ENSG00000123384 E071 34.3487191 0.0191022898 9.425820e-01 9.679604e-01 12 57198465 57198670 206 + 1.518 1.548 0.102
ENSG00000123384 E072 30.8732562 0.0092551570 8.101647e-01 8.795116e-01 12 57199212 57199400 189 + 1.488 1.494 0.022
ENSG00000123384 E073 23.1053005 0.0011450079 3.108450e-01 4.532860e-01 12 57199877 57200025 149 + 1.395 1.344 -0.176
ENSG00000123384 E074 0.5149111 0.0203903340 7.685356e-01 8.504142e-01 12 57200274 57200441 168 + 0.137 0.196 0.614
ENSG00000123384 E075 24.3893297 0.0007891887 1.289482e-01 2.327023e-01 12 57200442 57200535 94 + 1.438 1.355 -0.288
ENSG00000123384 E076 26.6163180 0.0007673914 7.248830e-01 8.182793e-01 12 57200699 57200815 117 + 1.426 1.425 -0.003
ENSG00000123384 E077 22.4329540 0.0009303516 1.921181e-01 3.164089e-01 12 57201034 57201107 74 + 1.276 1.397 0.421
ENSG00000123384 E078 19.0094128 0.0011732221 5.646535e-01 6.919001e-01 12 57201108 57201153 46 + 1.240 1.309 0.242
ENSG00000123384 E079 24.7973304 0.0007630987 7.740244e-01 8.542817e-01 12 57201497 57201619 123 + 1.368 1.411 0.150
ENSG00000123384 E080 27.6534643 0.0013343133 9.479025e-02 1.825640e-01 12 57201780 57201905 126 + 1.347 1.486 0.483
ENSG00000123384 E081 0.0000000       12 57201906 57201947 42 +      
ENSG00000123384 E082 26.8119607 0.0063282823 2.477845e-02 6.141913e-02 12 57202421 57202537 117 + 1.284 1.489 0.712
ENSG00000123384 E083 0.7331471 0.0172671820 7.416327e-02 1.501984e-01 12 57202820 57203180 361 + 0.000 0.330 12.215
ENSG00000123384 E084 16.7227029 0.0012366064 1.312916e-01 2.359422e-01 12 57203181 57203242 62 + 1.123 1.278 0.548
ENSG00000123384 E085 17.8298705 0.0021561184 2.200424e-01 3.504631e-01 12 57203243 57203287 45 + 1.169 1.297 0.451
ENSG00000123384 E086 28.0446456 0.0013350626 2.095522e-02 5.349625e-02 12 57203389 57203521 133 + 1.316 1.502 0.643
ENSG00000123384 E087 0.1472490 0.0422929053 3.603421e-01   12 57203522 57203531 10 + 0.137 0.000 -11.703
ENSG00000123384 E088 0.8126314 0.0153787590 8.609262e-02 1.691434e-01 12 57203618 57204409 792 + 0.396 0.109 -2.385
ENSG00000123384 E089 29.7605002 0.0013242868 1.547263e-02 4.156613e-02 12 57204410 57204529 120 + 1.339 1.529 0.654
ENSG00000123384 E090 31.1725085 0.0094031539 5.904584e-02 1.250034e-01 12 57204627 57204749 123 + 1.368 1.548 0.620
ENSG00000123384 E091 2.0723560 0.2078937135 5.492760e-01 6.790259e-01 12 57204750 57205108 359 + 0.397 0.518 0.620
ENSG00000123384 E092 31.3001552 0.0107195080 3.344988e-01 4.782410e-01 12 57205109 57205249 141 + 1.420 1.527 0.367
ENSG00000123384 E093 30.7659418 0.0073399085 1.236845e-02 3.441784e-02 12 57205351 57205485 135 + 1.332 1.554 0.766
ENSG00000123384 E094 30.4240458 0.0030810290 2.843324e-02 6.888048e-02 12 57205558 57205677 120 + 1.361 1.540 0.617
ENSG00000123384 E095 0.4428904 0.3821802158 4.052656e-01 5.489476e-01 12 57205678 57205785 108 + 0.000 0.203 10.675
ENSG00000123384 E096 55.0131746 0.0004353197 2.715985e-03 9.420788e-03 12 57206473 57206741 269 + 1.615 1.788 0.588
ENSG00000123384 E097 53.2407002 0.0010194320 2.564149e-03 8.954785e-03 12 57208038 57208216 179 + 1.595 1.776 0.616
ENSG00000123384 E098 1.1093169 0.0725678493 6.938603e-01 7.948299e-01 12 57208217 57208710 494 + 0.242 0.333 0.629
ENSG00000123384 E099 40.4701178 0.0005589148 8.706111e-04 3.511415e-03 12 57208711 57208817 107 + 1.455 1.673 0.744
ENSG00000123384 E100 37.9999342 0.0005803641 2.891808e-01 4.298463e-01 12 57209083 57209199 117 + 1.523 1.608 0.290
ENSG00000123384 E101 45.0736614 0.0030067793 9.426427e-02 1.817876e-01 12 57209692 57209868 177 + 1.574 1.696 0.416
ENSG00000123384 E102 40.9342171 0.0225350690 1.214203e-01 2.219567e-01 12 57210029 57210169 141 + 1.499 1.667 0.574
ENSG00000123384 E103 48.0146416 0.0037195297 4.905150e-05 2.769711e-04 12 57210307 57210480 174 + 1.483 1.759 0.939
ENSG00000123384 E104 46.7140010 0.0019446046 2.332788e-06 1.788723e-05 12 57210718 57210879 162 + 1.444 1.750 1.042
ENSG00000123384 E105 53.6342669 0.0029259521 2.821878e-08 3.193366e-07 12 57211176 57211350 175 + 1.483 1.830 1.180
ENSG00000123384 E106 42.8368147 0.0282745556 2.248743e-04 1.069805e-03 12 57211487 57211588 102 + 1.347 1.749 1.377
ENSG00000123384 E107 36.9286165 0.0189853211 1.270625e-05 8.242574e-05 12 57211750 57211814 65 + 1.258 1.692 1.494
ENSG00000123384 E108 35.7104365 0.0189988794 6.376931e-04 2.672057e-03 12 57211927 57212017 91 + 1.317 1.658 1.171
ENSG00000123384 E109 53.9025345 0.0548759154 2.811652e-03 9.709087e-03 12 57212117 57212261 145 + 1.446 1.842 1.348
ENSG00000123384 E110 152.2081585 0.0132706163 2.621941e-13 7.027715e-12 12 57212415 57213361 947 + 1.808 2.307 1.672