ENSG00000123066

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000281928 ENSG00000123066 HEK293_OSMI2_2hA HEK293_TMG_2hB MED13L protein_coding protein_coding 9.904254 6.825777 9.861113 0.4001017 0.1863821 0.5301074 2.9921363 2.0805604 3.5340858 0.30757575 0.09598272 0.7615238 0.31474167 0.3044667 0.35826667 0.05380000 6.005705e-01 2.465622e-37 FALSE TRUE
ENST00000647567 ENSG00000123066 HEK293_OSMI2_2hA HEK293_TMG_2hB MED13L protein_coding protein_coding 9.904254 6.825777 9.861113 0.4001017 0.1863821 0.5301074 0.9672548 0.0000000 1.2575567 0.00000000 0.04802439 6.9859065 0.07692083 0.0000000 0.12776667 0.12776667 6.339526e-17 2.465622e-37 FALSE TRUE
ENST00000648737 ENSG00000123066 HEK293_OSMI2_2hA HEK293_TMG_2hB MED13L protein_coding retained_intron 9.904254 6.825777 9.861113 0.4001017 0.1863821 0.5301074 1.8182401 0.0000000 3.1793046 0.00000000 0.07630579 8.3170981 0.15618333 0.0000000 0.32253333 0.32253333 2.465622e-37 2.465622e-37 FALSE TRUE
ENST00000648762 ENSG00000123066 HEK293_OSMI2_2hA HEK293_TMG_2hB MED13L protein_coding retained_intron 9.904254 6.825777 9.861113 0.4001017 0.1863821 0.5301074 0.8127932 3.0157921 0.0000000 0.44859762 0.00000000 -8.2411690 0.11578333 0.4419667 0.00000000 -0.44196667 5.286974e-22 2.465622e-37 FALSE TRUE
ENST00000649607 ENSG00000123066 HEK293_OSMI2_2hA HEK293_TMG_2hB MED13L protein_coding protein_coding 9.904254 6.825777 9.861113 0.4001017 0.1863821 0.5301074 1.0970632 0.9849259 0.5717267 0.02894014 0.05501153 -0.7742475 0.11832917 0.1452667 0.05823333 -0.08703333 4.300557e-04 2.465622e-37 FALSE TRUE
ENST00000649937 ENSG00000123066 HEK293_OSMI2_2hA HEK293_TMG_2hB MED13L protein_coding retained_intron 9.904254 6.825777 9.861113 0.4001017 0.1863821 0.5301074 0.7479964 0.0000000 0.0000000 0.00000000 0.00000000 0.0000000 0.07594167 0.0000000 0.00000000 0.00000000   2.465622e-37   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000123066 E001 0.6234634 0.0195518132 1.645796e-01 2.811326e-01 12 115957905 115958132 228 - 0.101 0.345 2.214
ENSG00000123066 E002 4.2341849 0.0041519836 5.014400e-02 1.094188e-01 12 115958576 115958599 24 - 0.558 0.850 1.218
ENSG00000123066 E003 47.8093865 0.0019667469 4.587847e-31 8.293453e-29 12 115958600 115958770 171 - 1.249 1.943 2.373
ENSG00000123066 E004 119.4702905 0.0026483443 3.421570e-66 4.409566e-63 12 115958771 115959260 490 - 1.578 2.348 2.589
ENSG00000123066 E005 52.3657879 0.0158618152 2.337959e-09 3.237241e-08 12 115959261 115959342 82 - 1.442 1.935 1.674
ENSG00000123066 E006 40.3306900 0.0158719951 6.508313e-09 8.311293e-08 12 115959343 115959363 21 - 1.325 1.826 1.714
ENSG00000123066 E007 40.7672311 0.0117207981 3.772456e-13 9.890401e-12 12 115959364 115959377 14 - 1.267 1.851 1.999
ENSG00000123066 E008 100.3507609 0.0074581970 9.978857e-19 5.516383e-17 12 115959378 115959605 228 - 1.707 2.214 1.705
ENSG00000123066 E009 32.0018506 0.0081160405 3.357357e-13 8.858513e-12 12 115959606 115959615 10 - 1.172 1.753 2.004
ENSG00000123066 E010 80.7961483 0.0004525462 2.038852e-31 3.757339e-29 12 115959616 115959862 247 - 1.618 2.115 1.674
ENSG00000123066 E011 129.4183985 0.0007285972 1.302586e-18 7.070801e-17 12 115959863 115960346 484 - 1.945 2.254 1.036
ENSG00000123066 E012 202.0787986 0.0011505819 1.998175e-06 1.554549e-05 12 115960347 115961189 843 - 2.226 2.382 0.519
ENSG00000123066 E013 84.7052529 0.0009151545 3.517247e-01 4.959545e-01 12 115961190 115961398 209 - 1.903 1.959 0.188
ENSG00000123066 E014 59.0597882 0.0004425831 8.554402e-01 9.106044e-01 12 115963407 115963519 113 - 1.761 1.788 0.090
ENSG00000123066 E015 0.4783925 0.0213129115 8.158341e-01 8.834343e-01 12 115963520 115963549 30 - 0.183 0.148 -0.368
ENSG00000123066 E016 69.7235434 0.0004028373 6.266876e-03 1.931132e-02 12 115966082 115966243 162 - 1.782 1.916 0.450
ENSG00000123066 E017 0.5244761 0.2971573151 8.774975e-01 9.252941e-01 12 115966244 115967158 915 - 0.183 0.150 -0.345
ENSG00000123066 E018 62.5486739 0.0021118668 5.549211e-02 1.188291e-01 12 115968940 115969097 158 - 1.747 1.859 0.377
ENSG00000123066 E019 67.3029877 0.0004694501 3.242409e-01 4.676086e-01 12 115970594 115970759 166 - 1.801 1.862 0.205
ENSG00000123066 E020 27.4521013 0.0047295542 4.684946e-01 6.079061e-01 12 115970760 115970770 11 - 1.416 1.486 0.240
ENSG00000123066 E021 56.5614509 0.0011431292 8.957406e-01 9.373933e-01 12 115972078 115972236 159 - 1.743 1.768 0.083
ENSG00000123066 E022 1.9605589 0.0391351682 3.054884e-01 4.476028e-01 12 115972237 115974181 1945 - 0.526 0.347 -0.945
ENSG00000123066 E023 62.5650802 0.0071862610 3.291979e-01 4.727047e-01 12 115975171 115975313 143 - 1.813 1.776 -0.125
ENSG00000123066 E024 1.5949851 0.0387016496 5.304756e-01 6.630870e-01 12 115975314 115975349 36 - 0.452 0.346 -0.590
ENSG00000123066 E025 1.7025820 0.0088690453 2.170832e-02 5.507079e-02 12 115975350 115975514 165 - 0.558 0.148 -2.689
ENSG00000123066 E026 72.4902699 0.0003772413 1.084171e-01 2.031986e-01 12 115975515 115975738 224 - 1.881 1.832 -0.166
ENSG00000123066 E027 1.0361675 0.0117513637 1.376506e-01 2.448073e-01 12 115978327 115980480 2154 - 0.410 0.148 -1.954
ENSG00000123066 E028 0.2955422 0.0298153535 7.740449e-01   12 115980481 115980749 269 - 0.101 0.147 0.629
ENSG00000123066 E029 46.7863809 0.0007945621 2.565731e-01 3.935471e-01 12 115980750 115980938 189 - 1.689 1.647 -0.141
ENSG00000123066 E030 3.7049977 0.0046044148 4.594032e-02 1.019272e-01 12 115980939 115981303 365 - 0.776 0.481 -1.294
ENSG00000123066 E031 2.4463528 0.0089095241 2.078064e-01 3.358410e-01 12 115981304 115981564 261 - 0.617 0.418 -0.955
ENSG00000123066 E032 7.8662038 0.0251513302 7.840036e-01 8.614463e-01 12 115981565 115982383 819 - 0.906 0.963 0.214
ENSG00000123066 E033 59.8658541 0.0004374522 7.640599e-01 8.472278e-01 12 115982384 115982595 212 - 1.775 1.779 0.015
ENSG00000123066 E034 23.4841707 0.0007962111 8.896834e-02 1.735513e-01 12 115982596 115982603 8 - 1.425 1.319 -0.368
ENSG00000123066 E035 0.0000000       12 115982604 115983116 513 -      
ENSG00000123066 E036 83.2592177 0.0003817289 2.009523e-03 7.255814e-03 12 115983117 115983519 403 - 1.964 1.859 -0.351
ENSG00000123066 E037 21.4161714 0.0016757518 2.811563e-02 6.824332e-02 12 115983520 115983540 21 - 1.408 1.256 -0.531
ENSG00000123066 E038 57.0635336 0.0003979242 5.443985e-06 3.843719e-05 12 115984180 115984372 193 - 1.837 1.635 -0.684
ENSG00000123066 E039 0.0000000       12 115984373 115985440 1068 -      
ENSG00000123066 E040 62.1670389 0.0003702723 7.198460e-04 2.970035e-03 12 115986266 115986489 224 - 1.850 1.713 -0.463
ENSG00000123066 E041 0.1451727 0.0433302714 6.964355e-01   12 115986490 115987108 619 - 0.101 0.000 -11.269
ENSG00000123066 E042 49.8934514 0.0004886474 6.514341e-02 1.352748e-01 12 115987109 115987288 180 - 1.737 1.662 -0.254
ENSG00000123066 E043 0.1451727 0.0433302714 6.964355e-01   12 115987289 115988579 1291 - 0.101 0.000 -11.269
ENSG00000123066 E044 51.7268349 0.0010405730 4.607883e-03 1.484204e-02 12 115991020 115991180 161 - 1.767 1.639 -0.434
ENSG00000123066 E045 96.9593844 0.0086220232 3.570581e-04 1.607538e-03 12 115991181 115991679 499 - 2.056 1.872 -0.620
ENSG00000123066 E046 23.1774833 0.0199371953 5.596458e-03 1.754538e-02 12 115991680 115991695 16 - 1.477 1.206 -0.941
ENSG00000123066 E047 31.3089459 0.0148776005 8.438708e-04 3.415416e-03 12 115991696 115991769 74 - 1.604 1.323 -0.967
ENSG00000123066 E048 47.5182357 0.0005396976 4.343470e-06 3.133859e-05 12 115991770 115991957 188 - 1.763 1.535 -0.778
ENSG00000123066 E049 0.0000000       12 115995521 115996475 955 -      
ENSG00000123066 E050 46.8343442 0.0004565450 7.114874e-06 4.890931e-05 12 115996476 115996681 206 - 1.757 1.534 -0.758
ENSG00000123066 E051 49.7434835 0.0020928679 1.108114e-04 5.715857e-04 12 115997010 115997227 218 - 1.775 1.579 -0.666
ENSG00000123066 E052 14.0486046 0.0030217274 3.041380e-02 7.277210e-02 12 115997228 115997230 3 - 1.249 1.062 -0.669
ENSG00000123066 E053 0.2214452 0.0392180641 3.337997e-01   12 115997231 116000172 2942 - 0.000 0.148 11.387
ENSG00000123066 E054 28.2525913 0.0007930568 2.345583e-05 1.431215e-04 12 116003003 116003102 100 - 1.566 1.293 -0.943
ENSG00000123066 E055 0.4847352 0.2753172952 8.661809e-01 9.178209e-01 12 116003103 116003497 395 - 0.183 0.148 -0.369
ENSG00000123066 E056 0.0000000       12 116003498 116003539 42 -      
ENSG00000123066 E057 2.2949366 0.0165633308 7.381836e-01 8.281272e-01 12 116003540 116005868 2329 - 0.526 0.481 -0.214
ENSG00000123066 E058 29.9363101 0.0119212193 5.244358e-04 2.250907e-03 12 116005869 116005993 125 - 1.590 1.317 -0.940
ENSG00000123066 E059 0.2987644 0.0272557092 3.297859e-01   12 116005994 116006305 312 - 0.183 0.000 -12.302
ENSG00000123066 E060 30.2511878 0.0506293273 6.244523e-02 1.307623e-01 12 116006306 116006411 106 - 1.566 1.375 -0.657
ENSG00000123066 E061 1.9637957 0.0070609600 8.326257e-03 2.460780e-02 12 116006412 116006806 395 - 0.617 0.148 -2.953
ENSG00000123066 E062 2.0564258 0.0089050013 4.882949e-01 6.258757e-01 12 116006807 116007410 604 - 0.525 0.418 -0.537
ENSG00000123066 E063 23.5927606 0.0842530847 2.268269e-02 5.709991e-02 12 116007411 116007459 49 - 1.496 1.194 -1.052
ENSG00000123066 E064 43.2022458 0.0005169262 7.408074e-08 7.716696e-07 12 116007460 116007636 177 - 1.747 1.462 -0.974
ENSG00000123066 E065 0.4783925 0.0213129115 8.158341e-01 8.834343e-01 12 116007637 116008400 764 - 0.183 0.148 -0.368
ENSG00000123066 E066 99.9966097 0.0003344806 7.380833e-15 2.481854e-13 12 116008401 116009007 607 - 2.100 1.826 -0.920
ENSG00000123066 E067 37.5558690 0.0197300986 6.305870e-05 3.464599e-04 12 116009008 116009132 125 - 1.700 1.355 -1.183
ENSG00000123066 E068 0.2934659 0.0299290916 7.741558e-01   12 116009133 116010972 1840 - 0.101 0.147 0.630
ENSG00000123066 E069 34.1175863 0.0006049569 1.688168e-09 2.397799e-08 12 116012797 116012898 102 - 1.667 1.293 -1.287
ENSG00000123066 E070 15.5071464 0.0012302278 2.337736e-09 3.237168e-08 12 116012899 116012901 3 - 1.380 0.797 -2.127
ENSG00000123066 E071 41.1919958 0.0006744439 2.399460e-12 5.534768e-11 12 116015109 116015274 166 - 1.751 1.344 -1.395
ENSG00000123066 E072 48.7593086 0.0022268388 5.976535e-14 1.753231e-12 12 116019224 116019412 189 - 1.830 1.397 -1.477
ENSG00000123066 E073 48.2845427 0.0004327498 8.143785e-17 3.543444e-15 12 116019778 116019972 195 - 1.834 1.382 -1.541
ENSG00000123066 E074 37.7437445 0.0005632809 1.582186e-11 3.187710e-10 12 116022456 116022601 146 - 1.716 1.311 -1.390
ENSG00000123066 E075 26.2914468 0.0007332012 2.476753e-11 4.839248e-10 12 116096669 116096752 84 - 1.584 1.091 -1.720
ENSG00000123066 E076 0.0000000       12 116096753 116096911 159 -      
ENSG00000123066 E077 1.5112334 0.0284685440 3.398233e-03 1.143308e-02 12 116109620 116110259 640 - 0.101 0.626 3.627
ENSG00000123066 E078 25.4452880 0.0007710742 1.835435e-09 2.589497e-08 12 116111428 116111512 85 - 1.560 1.119 -1.538
ENSG00000123066 E079 0.4460135 0.0275513785 1.648860e-01 2.815502e-01 12 116230433 116230532 100 - 0.251 0.000 -12.864
ENSG00000123066 E080 0.1472490 0.0430090283 6.964587e-01   12 116230533 116230622 90 - 0.101 0.000 -11.270
ENSG00000123066 E081 0.1515154 0.0436012273 6.958617e-01   12 116232059 116232156 98 - 0.101 0.000 -11.268
ENSG00000123066 E082 0.0000000       12 116236821 116236890 70 -      
ENSG00000123066 E083 17.7437127 0.0011934207 5.124465e-06 3.638326e-05 12 116237468 116237498 31 - 1.399 1.014 -1.368
ENSG00000123066 E084 33.0346238 0.0006048418 1.837628e-13 5.038107e-12 12 116237499 116237705 207 - 1.679 1.193 -1.682
ENSG00000123066 E085 0.0000000       12 116276062 116276429 368 -      
ENSG00000123066 E086 0.0000000       12 116276430 116276759 330 -      
ENSG00000123066 E087 16.6855344 0.0011019799 3.474470e-14 1.055847e-12 12 116277060 116277693 634 - 1.442 0.667 -2.871