ENSG00000122966

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000392521 ENSG00000122966 HEK293_OSMI2_2hA HEK293_TMG_2hB CIT protein_coding protein_coding 10.01647 10.11313 8.131599 0.2373069 0.349105 -0.3142718 3.0555877 2.0277077 2.85237071 0.20598981 0.02594411 0.4902634 0.32149583 0.19990000 0.35193333 0.15203333 5.764458e-04 2.27618e-11 FALSE TRUE
ENST00000544800 ENSG00000122966 HEK293_OSMI2_2hA HEK293_TMG_2hB CIT protein_coding retained_intron 10.01647 10.11313 8.131599 0.2373069 0.349105 -0.3142718 0.6253771 0.3440441 0.78755429 0.17260313 0.36714116 1.1716535 0.06172083 0.03336667 0.09353333 0.06016667 5.104127e-01 2.27618e-11   FALSE
ENST00000677738 ENSG00000122966 HEK293_OSMI2_2hA HEK293_TMG_2hB CIT protein_coding retained_intron 10.01647 10.11313 8.131599 0.2373069 0.349105 -0.3142718 0.9045226 1.4859659 0.38264943 0.23635909 0.04128256 -1.9297636 0.08077500 0.14643333 0.04706667 -0.09936667 6.986506e-04 2.27618e-11 FALSE TRUE
ENST00000677742 ENSG00000122966 HEK293_OSMI2_2hA HEK293_TMG_2hB CIT protein_coding processed_transcript 10.01647 10.11313 8.131599 0.2373069 0.349105 -0.3142718 0.9351461 0.9107946 0.76969805 0.08820033 0.21952316 -0.2399639 0.08964583 0.09033333 0.09423333 0.00390000 1.000000e+00 2.27618e-11 FALSE TRUE
ENST00000678708 ENSG00000122966 HEK293_OSMI2_2hA HEK293_TMG_2hB CIT protein_coding retained_intron 10.01647 10.11313 8.131599 0.2373069 0.349105 -0.3142718 1.2452622 2.9518093 0.09936694 0.44726444 0.02917348 -4.7592302 0.11623333 0.29426667 0.01253333 -0.28173333 2.276180e-11 2.27618e-11 TRUE FALSE
MSTRG.8137.4 ENSG00000122966 HEK293_OSMI2_2hA HEK293_TMG_2hB CIT protein_coding   10.01647 10.11313 8.131599 0.2373069 0.349105 -0.3142718 1.6573477 1.3155568 1.86223129 0.35168365 0.16501302 0.4981601 0.17032917 0.12866667 0.22950000 0.10083333 2.228950e-01 2.27618e-11 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000122966 E001 0.5514428 0.0196554398 8.454731e-02 1.666691e-01 12 119685791 119685792 2 - 0.000 0.306 11.719
ENSG00000122966 E002 1.2167234 0.0109994459 5.040520e-02 1.098888e-01 12 119685793 119685802 10 - 0.118 0.483 2.714
ENSG00000122966 E003 7.1093151 0.0024374291 2.104338e-03 7.547102e-03 12 119685803 119685813 11 - 0.646 1.063 1.624
ENSG00000122966 E004 388.8147177 0.0087641361 1.851380e-15 6.759267e-14 12 119685814 119687034 1221 - 2.331 2.738 1.357
ENSG00000122966 E005 202.7418500 0.0048440471 1.967665e-07 1.887530e-06 12 119687035 119687759 725 - 2.154 2.411 0.858
ENSG00000122966 E006 71.1663270 0.0011162692 5.828332e-07 5.092049e-06 12 119687760 119687948 189 - 1.695 1.962 0.901
ENSG00000122966 E007 48.0298878 0.0005382296 1.855942e-01 3.082371e-01 12 119687949 119688064 116 - 1.624 1.733 0.372
ENSG00000122966 E008 53.1947137 0.0004409150 2.817939e-01 4.217126e-01 12 119688065 119688210 146 - 1.681 1.775 0.318
ENSG00000122966 E009 30.2264899 0.0006575954 3.000109e-01 4.416311e-01 12 119688211 119688255 45 - 1.434 1.540 0.367
ENSG00000122966 E010 59.8394234 0.0050718235 1.469888e-02 3.981211e-02 12 119690151 119690381 231 - 1.675 1.858 0.618
ENSG00000122966 E011 24.7983763 0.0154619228 7.375807e-02 1.495392e-01 12 119690382 119690400 19 - 1.287 1.494 0.717
ENSG00000122966 E012 33.7727318 0.0343235796 2.740144e-02 6.680806e-02 12 119690401 119690451 51 - 1.369 1.651 0.968
ENSG00000122966 E013 12.7469410 0.0589165502 5.449055e-02 1.171067e-01 12 119690452 119690454 3 - 0.943 1.267 1.171
ENSG00000122966 E014 1.0202834 0.2150139912 1.818988e-01 3.036005e-01 12 119690455 119690481 27 - 0.118 0.431 2.450
ENSG00000122966 E015 2.2047309 0.0086031504 9.866960e-01 9.957576e-01 12 119690482 119691065 584 - 0.502 0.529 0.128
ENSG00000122966 E016 58.3089496 0.0151838984 9.331042e-02 1.802949e-01 12 119697659 119697838 180 - 1.678 1.843 0.559
ENSG00000122966 E017 0.8062000 0.0965982923 6.839696e-01 7.870358e-01 12 119697839 119697975 137 - 0.210 0.305 0.711
ENSG00000122966 E018 44.2110523 0.0005086275 3.104974e-01 4.529073e-01 12 119697976 119698054 79 - 1.601 1.696 0.324
ENSG00000122966 E019 2.5452239 0.0124091045 6.428877e-01 7.555629e-01 12 119698055 119698185 131 - 0.502 0.608 0.489
ENSG00000122966 E020 44.6591652 0.0005033204 4.748590e-01 6.136593e-01 12 119700745 119700825 81 - 1.611 1.690 0.270
ENSG00000122966 E021 59.0091825 0.0004363621 1.643869e-01 2.808929e-01 12 119701624 119701752 129 - 1.714 1.820 0.359
ENSG00000122966 E022 26.8553582 0.0018831320 3.159823e-01 4.587541e-01 12 119701850 119701851 2 - 1.381 1.491 0.380
ENSG00000122966 E023 52.1335648 0.0005391676 1.877897e-01 3.109535e-01 12 119701852 119701958 107 - 1.661 1.768 0.361
ENSG00000122966 E024 50.3233235 0.0004922398 1.767935e-02 4.644517e-02 12 119704363 119704455 93 - 1.614 1.775 0.545
ENSG00000122966 E025 57.9778669 0.0004330666 1.798136e-02 4.709236e-02 12 119708179 119708318 140 - 1.678 1.831 0.516
ENSG00000122966 E026 2.6322985 0.0057124480 5.844095e-03 1.820216e-02 12 119708516 119710250 1735 - 0.729 0.306 -2.093
ENSG00000122966 E027 33.7902569 0.0006196735 2.330225e-01 3.660160e-01 12 119710251 119710294 44 - 1.472 1.585 0.388
ENSG00000122966 E028 43.4126607 0.0005191321 2.723048e-01 4.111693e-01 12 119710295 119710386 92 - 1.649 1.632 -0.056
ENSG00000122966 E029 39.4001260 0.0005540057 3.575702e-02 8.311628e-02 12 119710540 119710620 81 - 1.637 1.561 -0.257
ENSG00000122966 E030 10.5038296 0.0253358661 5.683808e-03 1.777618e-02 12 119710621 119711048 428 - 1.186 0.877 -1.132
ENSG00000122966 E031 10.7909476 0.0109392757 1.393482e-01 2.471547e-01 12 119711049 119711093 45 - 1.119 0.996 -0.447
ENSG00000122966 E032 5.4366321 0.0030362495 1.671636e-01 2.845084e-01 12 119711094 119711134 41 - 0.877 0.734 -0.562
ENSG00000122966 E033 30.9382794 0.0007514513 1.071337e-10 1.881365e-09 12 119711135 119712177 1043 - 1.661 1.287 -1.286
ENSG00000122966 E034 37.3132626 0.0007463962 5.630620e-01 6.905887e-01 12 119712178 119712249 72 - 1.573 1.581 0.029
ENSG00000122966 E035 36.1827373 0.0030408374 9.855104e-01 9.949496e-01 12 119712250 119712309 60 - 1.539 1.582 0.148
ENSG00000122966 E036 29.7674850 0.0007138508 2.493578e-01 3.851649e-01 12 119712310 119712347 38 - 1.498 1.466 -0.109
ENSG00000122966 E037 2.2090740 0.0072210492 2.898173e-02 6.997032e-02 12 119712348 119712590 243 - 0.646 0.306 -1.744
ENSG00000122966 E038 40.6828918 0.0209640278 8.907166e-01 9.342189e-01 12 119712591 119712695 105 - 1.580 1.642 0.209
ENSG00000122966 E039 1.6607623 0.0084374069 5.234677e-01 6.571600e-01 12 119713019 119713202 184 - 0.457 0.373 -0.454
ENSG00000122966 E040 19.8269942 0.0009403650 4.429252e-01 5.844757e-01 12 119713203 119713212 10 - 1.258 1.358 0.349
ENSG00000122966 E041 32.7609657 0.0036217003 3.641677e-01 5.085394e-01 12 119713213 119713294 82 - 1.467 1.570 0.353
ENSG00000122966 E042 44.1232316 0.0009348062 8.510924e-01 9.076713e-01 12 119713468 119713633 166 - 1.634 1.666 0.109
ENSG00000122966 E043 18.7527643 0.0010504436 7.483347e-01 8.356110e-01 12 119713634 119713648 15 - 1.280 1.295 0.054
ENSG00000122966 E044 0.7061804 0.0873947395 9.995999e-01 1.000000e+00 12 119713649 119713818 170 - 0.210 0.227 0.138
ENSG00000122966 E045 18.8025967 0.0011446043 4.919373e-01 6.291674e-01 12 119714197 119714208 12 - 1.294 1.280 -0.048
ENSG00000122966 E046 36.1392083 0.0026956006 9.148342e-01 9.500656e-01 12 119714209 119714334 126 - 1.543 1.578 0.121
ENSG00000122966 E047 35.8189611 0.0039553067 5.752461e-01 7.008949e-01 12 119718245 119718409 165 - 1.519 1.597 0.267
ENSG00000122966 E048 30.2855412 0.0010482829 5.305122e-01 6.631123e-01 12 119718699 119718804 106 - 1.494 1.496 0.006
ENSG00000122966 E049 18.6787425 0.0121088576 6.434804e-01 7.560211e-01 12 119718805 119718816 12 - 1.293 1.289 -0.016
ENSG00000122966 E050 16.9137059 0.0029739119 8.230739e-01 8.884837e-01 12 119718817 119718861 45 - 1.235 1.256 0.076
ENSG00000122966 E051 1.0414780 0.1787712906 3.232561e-01 4.665663e-01 12 119718862 119720477 1616 - 0.408 0.222 -1.222
ENSG00000122966 E052 28.9495542 0.0108109156 2.226447e-01 3.535482e-01 12 119720478 119720523 46 - 1.494 1.440 -0.184
ENSG00000122966 E053 30.6462184 0.0006703808 9.865983e-04 3.912913e-03 12 119720524 119720585 62 - 1.573 1.407 -0.570
ENSG00000122966 E054 43.5080284 0.0005185925 1.388549e-03 5.269139e-03 12 119721309 119721449 141 - 1.708 1.581 -0.433
ENSG00000122966 E055 0.1472490 0.0432567924 4.849034e-01   12 119721450 119723327 1878 - 0.118 0.000 -13.598
ENSG00000122966 E056 0.5169874 0.0206589907 5.714072e-01 6.976938e-01 12 119726572 119728501 1930 - 0.118 0.226 1.130
ENSG00000122966 E057 38.9782069 0.0018541102 9.241212e-03 2.688951e-02 12 119728502 119728606 105 - 1.658 1.548 -0.373
ENSG00000122966 E058 38.5699648 0.0009796949 2.826069e-04 1.308863e-03 12 119730495 119730630 136 - 1.678 1.514 -0.561
ENSG00000122966 E059 51.8315100 0.0008744347 7.393894e-05 3.990175e-04 12 119734164 119734357 194 - 1.794 1.639 -0.526
ENSG00000122966 E060 0.4355181 0.6305763502 2.780628e-01 4.176861e-01 12 119734358 119734406 49 - 0.285 0.000 -13.724
ENSG00000122966 E061 52.5177483 0.0004457741 8.013808e-06 5.440963e-05 12 119735160 119735357 198 - 1.807 1.632 -0.593
ENSG00000122966 E062 0.2924217 0.0271297639 1.978398e-01   12 119740711 119742410 1700 - 0.210 0.000 -14.729
ENSG00000122966 E063 27.0814751 0.0007012196 9.938332e-03 2.860770e-02 12 119742411 119742464 54 - 1.507 1.377 -0.448
ENSG00000122966 E064 0.0000000       12 119742465 119742731 267 -      
ENSG00000122966 E065 0.0000000       12 119742732 119742864 133 -      
ENSG00000122966 E066 47.1597638 0.0045407185 4.359646e-03 1.414708e-02 12 119752050 119752247 198 - 1.741 1.616 -0.427
ENSG00000122966 E067 45.3411314 0.0090968409 8.434961e-03 2.487319e-02 12 119757371 119757512 142 - 1.729 1.595 -0.457
ENSG00000122966 E068 30.0137240 0.0139374878 3.474639e-03 1.165206e-02 12 119757513 119757545 33 - 1.583 1.384 -0.684
ENSG00000122966 E069 37.6511284 0.0123669774 1.183076e-04 6.061015e-04 12 119758591 119758700 110 - 1.700 1.447 -0.864
ENSG00000122966 E070 35.8306905 0.0006030554 9.593629e-05 5.029845e-04 12 119760939 119761055 117 - 1.652 1.466 -0.635
ENSG00000122966 E071 32.7402207 0.0100027945 1.884637e-02 4.899667e-02 12 119767087 119767182 96 - 1.590 1.453 -0.469
ENSG00000122966 E072 0.3030308 0.4074867145 2.962649e-01   12 119769110 119769545 436 - 0.211 0.000 -13.400
ENSG00000122966 E073 0.5870335 0.1369277603 5.362998e-02 1.156011e-01 12 119769546 119770117 572 - 0.351 0.000 -14.982
ENSG00000122966 E074 0.1451727 0.0433013383 4.850270e-01   12 119770118 119770784 667 - 0.118 0.000 -13.598
ENSG00000122966 E075 34.8143629 0.0218392212 6.926819e-02 1.421493e-01 12 119770785 119770910 126 - 1.610 1.487 -0.422
ENSG00000122966 E076 0.0000000       12 119770911 119772534 1624 -      
ENSG00000122966 E077 0.0000000       12 119772535 119772769 235 -      
ENSG00000122966 E078 32.0511403 0.0117327914 1.568849e-02 4.203812e-02 12 119772770 119772910 141 - 1.583 1.434 -0.511
ENSG00000122966 E079 0.1451727 0.0433013383 4.850270e-01   12 119775775 119775785 11 - 0.118 0.000 -13.598
ENSG00000122966 E080 16.4611543 0.0011640058 2.214681e-01 3.521640e-01 12 119775786 119775839 54 - 1.265 1.204 -0.218
ENSG00000122966 E081 0.0000000       12 119775840 119776357 518 -      
ENSG00000122966 E082 24.7476301 0.0013069574 6.394733e-03 1.964970e-02 12 119776358 119776408 51 - 1.481 1.331 -0.518
ENSG00000122966 E083 0.1482932 0.0423292382 4.912373e-01   12 119776409 119776671 263 - 0.000 0.127 12.931
ENSG00000122966 E084 37.8991393 0.0005809980 3.794286e-06 2.775673e-05 12 119776672 119776842 171 - 1.692 1.471 -0.754
ENSG00000122966 E085 0.0000000       12 119776843 119777104 262 -      
ENSG00000122966 E086 0.0000000       12 119782156 119782517 362 -      
ENSG00000122966 E087 29.2698591 0.0067726390 1.513373e-02 4.078756e-02 12 119782518 119782637 120 - 1.547 1.407 -0.480
ENSG00000122966 E088 4.2579555 0.0038033615 2.888599e-02 6.977297e-02 12 119782638 119783907 1270 - 0.502 0.853 1.492
ENSG00000122966 E089 30.8748361 0.0026459918 3.751693e-03 1.244416e-02 12 119783908 119784011 104 - 1.569 1.419 -0.516
ENSG00000122966 E090 24.0674408 0.0008002805 1.574338e-04 7.802990e-04 12 119784012 119784051 40 - 1.498 1.272 -0.784
ENSG00000122966 E091 0.4448795 0.6032790650 2.746360e-01 4.138150e-01 12 119784189 119784959 771 - 0.000 0.291 13.156
ENSG00000122966 E092 35.1951827 0.0005680167 3.303708e-05 1.944927e-04 12 119784960 119785065 106 - 1.649 1.446 -0.695
ENSG00000122966 E093 35.3533903 0.0077934516 3.118162e-03 1.061351e-02 12 119803206 119803389 184 - 1.636 1.468 -0.574
ENSG00000122966 E094 0.0000000       12 119803390 119803500 111 -      
ENSG00000122966 E095 0.0000000       12 119804097 119804162 66 -      
ENSG00000122966 E096 0.0000000       12 119804163 119804522 360 -      
ENSG00000122966 E097 32.8014088 0.0038501599 6.976970e-04 2.890812e-03 12 119822820 119822973 154 - 1.614 1.430 -0.631
ENSG00000122966 E098 32.8712256 0.0027940985 1.429594e-04 7.163172e-04 12 119825165 119825368 204 - 1.624 1.418 -0.704
ENSG00000122966 E099 26.6434788 0.0007387068 2.778446e-02 6.758795e-02 12 119832771 119832864 94 - 1.494 1.389 -0.362
ENSG00000122966 E100 30.5317288 0.0040745383 1.576839e-02 4.221163e-02 12 119834086 119834228 143 - 1.562 1.439 -0.420
ENSG00000122966 E101 29.0018187 0.0011075063 4.009869e-03 1.317067e-02 12 119850174 119850275 102 - 1.551 1.406 -0.496
ENSG00000122966 E102 43.0435244 0.0005068667 1.743340e-06 1.374066e-05 12 119857523 119857698 176 - 1.741 1.527 -0.728
ENSG00000122966 E103 42.1178836 0.0006438007 8.485563e-03 2.500025e-02 12 119869060 119869201 142 - 1.678 1.577 -0.343
ENSG00000122966 E104 26.3115090 0.0099903052 3.277746e-01 4.712448e-01 12 119876073 119876181 109 - 1.448 1.410 -0.131
ENSG00000122966 E105 10.7800589 0.0534198088 3.806541e-01 5.249334e-01 12 119877249 119877320 72 - 1.097 1.021 -0.275