ENSG00000120948

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000240185 ENSG00000120948 HEK293_OSMI2_2hA HEK293_TMG_2hB TARDBP protein_coding protein_coding 150.3556 86.43209 208.1246 7.20527 7.442354 1.267711 25.54055 18.83790 38.03854 2.517734 1.777803 1.0134368 0.1796292 0.2186667 0.1833667 -0.0353000 0.630392297 1.452058e-18 FALSE TRUE
ENST00000315091 ENSG00000120948 HEK293_OSMI2_2hA HEK293_TMG_2hB TARDBP protein_coding protein_coding 150.3556 86.43209 208.1246 7.20527 7.442354 1.267711 38.74961 28.80092 41.57467 5.087884 3.500833 0.5294363 0.2726042 0.3284667 0.1991333 -0.1293333 0.006898379 1.452058e-18 FALSE TRUE
ENST00000639083 ENSG00000120948 HEK293_OSMI2_2hA HEK293_TMG_2hB TARDBP protein_coding protein_coding 150.3556 86.43209 208.1246 7.20527 7.442354 1.267711 54.48159 28.17761 76.90711 1.303743 3.426954 1.4482433 0.3546708 0.3310000 0.3696000 0.0386000 0.680440454 1.452058e-18 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000120948 E001 0.0000000       1 11012331 11012343 13 +      
ENSG00000120948 E002 1.6295437 0.0086230094 5.706291e-02 1.215744e-01 1 11012344 11012380 37 + 0.515 0.166 -2.287
ENSG00000120948 E003 2.3595598 0.0061421274 8.675987e-03 2.547410e-02 1 11012381 11012423 43 + 0.644 0.166 -2.871
ENSG00000120948 E004 2.2123108 0.0071290622 1.279746e-02 3.543881e-02 1 11012424 11012424 1 + 0.621 0.166 -2.772
ENSG00000120948 E005 2.2123108 0.0071290622 1.279746e-02 3.543881e-02 1 11012425 11012428 4 + 0.621 0.166 -2.772
ENSG00000120948 E006 1.6597327 0.0083836914 2.547984e-01 3.915795e-01 1 11012429 11012478 50 + 0.484 0.286 -1.135
ENSG00000120948 E007 1.6597327 0.0083836914 2.547984e-01 3.915795e-01 1 11012479 11012480 2 + 0.484 0.286 -1.135
ENSG00000120948 E008 3.3506839 0.0048069211 9.697015e-01 9.850297e-01 1 11012481 11012593 113 + 0.621 0.630 0.036
ENSG00000120948 E009 1.6856552 0.0113984017 6.492939e-01 7.605969e-01 1 11012594 11012606 13 + 0.450 0.380 -0.379
ENSG00000120948 E010 1.9854638 0.0070205140 8.183136e-01 8.851759e-01 1 11012607 11012621 15 + 0.484 0.457 -0.135
ENSG00000120948 E011 4.4074884 0.0170005248 8.317603e-01 8.945759e-01 1 11012622 11012652 31 + 0.707 0.753 0.188
ENSG00000120948 E012 3.4926474 0.0074229899 7.983935e-01 8.713308e-01 1 11012653 11012653 1 + 0.621 0.675 0.229
ENSG00000120948 E013 8.4212733 0.0104304147 1.424036e-01 2.513200e-01 1 11012654 11012661 8 + 0.880 1.069 0.703
ENSG00000120948 E014 62.9233681 0.0094398677 1.299767e-06 1.053466e-05 1 11012662 11012669 8 + 1.887 1.561 -1.106
ENSG00000120948 E015 312.6569524 0.0122882280 3.965909e-02 9.039421e-02 1 11012670 11012743 74 + 2.519 2.410 -0.364
ENSG00000120948 E016 291.7384371 0.0119076563 4.290311e-02 9.636109e-02 1 11013716 11013727 12 + 2.488 2.382 -0.355
ENSG00000120948 E017 826.5930032 0.0045429415 6.202941e-05 3.414583e-04 1 11013728 11013965 238 + 2.947 2.817 -0.433
ENSG00000120948 E018 7.1662324 0.0028408758 3.016875e-01 4.434934e-01 1 11015524 11015646 123 + 0.853 0.993 0.527
ENSG00000120948 E019 1.4413934 0.0092060113 9.784255e-01 9.906460e-01 1 11016123 11016254 132 + 0.374 0.380 0.036
ENSG00000120948 E020 293.0549925 0.0029257779 3.721747e-05 2.161411e-04 1 11016844 11016858 15 + 2.498 2.368 -0.435
ENSG00000120948 E021 284.3459256 0.0040731390 7.384261e-05 3.985544e-04 1 11016859 11016864 6 + 2.489 2.346 -0.476
ENSG00000120948 E022 321.4413556 0.0028348538 2.027565e-04 9.756570e-04 1 11016865 11016877 13 + 2.533 2.421 -0.373
ENSG00000120948 E023 671.4301893 0.0018423382 2.420524e-09 3.340334e-08 1 11016878 11016965 88 + 2.860 2.721 -0.465
ENSG00000120948 E024 520.1618193 0.0008922158 3.248486e-12 7.330745e-11 1 11016966 11017007 42 + 2.750 2.611 -0.463
ENSG00000120948 E025 0.9016039 0.2274123457 4.612586e-01 6.012389e-01 1 11018374 11018405 32 + 0.331 0.164 -1.312
ENSG00000120948 E026 0.6017953 0.1610186712 1.873624e-01 3.104234e-01 1 11018406 11018466 61 + 0.281 0.000 -9.695
ENSG00000120948 E027 630.1189092 0.0003935177 1.055106e-12 2.578850e-11 1 11018733 11018779 47 + 2.824 2.715 -0.363
ENSG00000120948 E028 739.5177471 0.0003382493 5.151435e-12 1.124803e-10 1 11018780 11018852 73 + 2.889 2.794 -0.316
ENSG00000120948 E029 517.8735629 0.0001326656 2.286584e-11 4.492704e-10 1 11018853 11018873 21 + 2.735 2.639 -0.322
ENSG00000120948 E030 3.6513237 0.0204821180 9.424840e-01 9.678913e-01 1 11018874 11019186 313 + 0.666 0.673 0.029
ENSG00000120948 E031 463.9110913 0.0002617897 1.867784e-09 2.631217e-08 1 11020429 11020432 4 + 2.688 2.592 -0.318
ENSG00000120948 E032 793.2596999 0.0002215932 4.638213e-13 1.201389e-11 1 11020433 11020505 73 + 2.918 2.828 -0.301
ENSG00000120948 E033 785.5066987 0.0023265226 1.475444e-04 7.365245e-04 1 11020506 11020586 81 + 2.912 2.823 -0.298
ENSG00000120948 E034 501.4711424 0.0042956634 3.092761e-03 1.053917e-02 1 11020587 11020599 13 + 2.719 2.623 -0.319
ENSG00000120948 E035 536.6131409 0.0008509484 2.485362e-09 3.425319e-08 1 11022124 11022143 20 + 2.755 2.642 -0.376
ENSG00000120948 E036 610.1533113 0.0009085107 1.769941e-10 2.993571e-09 1 11022144 11022177 34 + 2.813 2.693 -0.398
ENSG00000120948 E037 760.0488716 0.0008310125 1.197024e-09 1.747496e-08 1 11022178 11022241 64 + 2.903 2.800 -0.342
ENSG00000120948 E038 483.2388955 0.0025264205 6.848295e-05 3.727915e-04 1 11022242 11022250 9 + 2.707 2.601 -0.353
ENSG00000120948 E039 481.0835736 0.0008796409 1.978786e-14 6.233712e-13 1 11022251 11022268 18 + 2.721 2.563 -0.527
ENSG00000120948 E040 490.5628883 0.0011995492 3.808722e-12 8.493830e-11 1 11022269 11022307 39 + 2.728 2.575 -0.509
ENSG00000120948 E041 972.3092090 0.0005825212 7.509765e-05 4.047172e-04 1 11022308 11022547 240 + 2.992 2.943 -0.163
ENSG00000120948 E042 749.3666274 0.0004003102 1.232168e-01 2.245643e-01 1 11022548 11022715 168 + 2.845 2.888 0.140
ENSG00000120948 E043 498.2688769 0.0001509997 3.195862e-10 5.178297e-09 1 11022716 11022817 102 + 2.634 2.760 0.417
ENSG00000120948 E044 913.9874173 0.0002364395 3.329178e-11 6.363664e-10 1 11022818 11023029 212 + 2.905 3.014 0.364
ENSG00000120948 E045 424.8659580 0.0002150423 3.462823e-03 1.161902e-02 1 11023030 11023044 15 + 2.588 2.661 0.245
ENSG00000120948 E046 820.3598559 0.0001110927 7.809422e-08 8.097819e-07 1 11023045 11023155 111 + 2.866 2.956 0.301
ENSG00000120948 E047 475.0506356 0.0006941717 1.345142e-04 6.790661e-04 1 11023156 11023160 5 + 2.626 2.723 0.325
ENSG00000120948 E048 568.3646966 0.0003815916 1.388913e-06 1.118208e-05 1 11023161 11023192 32 + 2.701 2.805 0.346
ENSG00000120948 E049 341.8337463 0.0002667036 4.039796e-11 7.609140e-10 1 11023193 11023197 5 + 2.458 2.614 0.519
ENSG00000120948 E050 646.2246472 0.0001134202 1.899778e-11 3.778950e-10 1 11023198 11023262 65 + 2.751 2.870 0.395
ENSG00000120948 E051 802.3338765 0.0001372777 7.409138e-11 1.335400e-09 1 11023263 11023322 60 + 2.849 2.958 0.360
ENSG00000120948 E052 509.7769559 0.0001376756 1.238257e-08 1.501242e-07 1 11023323 11023329 7 + 2.650 2.765 0.381
ENSG00000120948 E053 1903.6211956 0.0023055697 1.222321e-08 1.483536e-07 1 11023330 11023667 338 + 3.203 3.355 0.507
ENSG00000120948 E054 1238.3155597 0.0068462447 8.631736e-09 1.076818e-07 1 11023668 11023866 199 + 2.965 3.223 0.856
ENSG00000120948 E055 626.2342325 0.0072934166 6.323232e-10 9.741541e-09 1 11023867 11023928 62 + 2.649 2.946 0.987
ENSG00000120948 E056 411.0791035 0.0087072413 3.330566e-11 6.365033e-10 1 11023929 11024063 135 + 2.436 2.789 1.176
ENSG00000120948 E057 155.0471011 0.0011693791 1.578303e-03 5.888586e-03 1 11024064 11024301 238 + 2.213 2.124 -0.299
ENSG00000120948 E058 83.0324904 0.0011526357 2.668520e-02 6.533591e-02 1 11024302 11024335 34 + 1.939 1.861 -0.262
ENSG00000120948 E059 264.8952272 0.0063408489 4.989309e-04 2.156093e-03 1 11024336 11024792 457 + 2.458 2.320 -0.460
ENSG00000120948 E060 212.0685897 0.0149795956 7.962773e-01 8.699574e-01 1 11024793 11025109 317 + 2.299 2.340 0.138
ENSG00000120948 E061 184.7302645 0.0209566736 4.331007e-01 5.755525e-01 1 11025110 11025208 99 + 2.219 2.308 0.296
ENSG00000120948 E062 139.5777957 0.0177411976 9.724079e-02 1.862668e-01 1 11025209 11025492 284 + 2.073 2.220 0.490
ENSG00000120948 E063 18.6233032 0.0011070586 1.551835e-08 1.845862e-07 1 11025551 11025739 189 + 1.411 0.876 -1.925
ENSG00000120948 E064 6.2666918 0.0029912741 1.519475e-01 2.643100e-01 1 11029659 11029686 28 + 0.778 0.972 0.745
ENSG00000120948 E065 14.4775833 0.0012044355 1.204172e-01 2.205653e-01 1 11029687 11029757 71 + 1.115 1.272 0.555
ENSG00000120948 E066 14.6939215 0.0011889384 5.273125e-01 6.604078e-01 1 11029758 11029781 24 + 1.152 1.226 0.265
ENSG00000120948 E067 22.0296086 0.0025235591 5.939854e-02 1.256086e-01 1 11029782 11029901 120 + 1.278 1.440 0.565
ENSG00000120948 E068 51.2012556 0.0004633557 1.884764e-06 1.474857e-05 1 11029902 11030178 277 + 1.596 1.850 0.863
ENSG00000120948 E069 51.3885046 0.0051121237 1.048434e-03 4.126965e-03 1 11030179 11030528 350 + 1.618 1.833 0.729