ENSG00000119397

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000373845 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding retained_intron 3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.08747758 0.18224001 0.05717542 0.18224001 0.028650248 -1.5169033 0.03495000 0.12830000 0.01560000 -0.11270000 0.966878911 0.003488913 FALSE TRUE
ENST00000373850 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding protein_coding 3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.26553941 0.10343059 0.40996503 0.10343059 0.317110034 1.8884594 0.07315417 0.05300000 0.10403333 0.05103333 0.838491838 0.003488913 FALSE TRUE
ENST00000373855 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding protein_coding 3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.21984637 0.00000000 0.51365767 0.00000000 0.305712021 5.7105521 0.06495417 0.00000000 0.13400000 0.13400000 0.351468683 0.003488913 FALSE TRUE
ENST00000688065 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding protein_coding 3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.04377567 0.00000000 0.30336319 0.00000000 0.066012159 4.9697638 0.01104167 0.00000000 0.07846667 0.07846667 0.003488913 0.003488913 FALSE FALSE
ENST00000689304 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding nonsense_mediated_decay 3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.28211704 0.57352310 0.00000000 0.32166952 0.000000000 -5.8667179 0.14889583 0.38193333 0.00000000 -0.38193333 0.080985949 0.003488913 FALSE TRUE
ENST00000689516 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding retained_intron 3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.17626746 0.06178683 0.21891533 0.02586335 0.009228025 1.6730230 0.05505833 0.03813333 0.05723333 0.01910000 0.752959028 0.003488913 FALSE TRUE
ENST00000689934 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding protein_coding 3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.19145378 0.00000000 0.29452692 0.00000000 0.175075324 4.9284978 0.05203750 0.00000000 0.07143333 0.07143333 0.356758093 0.003488913   FALSE
MSTRG.33317.13 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding   3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.21890030 0.06187223 0.32890708 0.06187223 0.328907083 2.2373835 0.06757083 0.04356667 0.08040000 0.03683333 0.926816196 0.003488913 FALSE TRUE
MSTRG.33317.19 ENSG00000119397 HEK293_OSMI2_2hA HEK293_TMG_2hB CNTRL protein_coding   3.003432 1.47604 3.84339 0.2602422 0.2703923 1.374656 0.65543305 0.29823226 0.58575847 0.12157284 0.397677209 0.9507097 0.22054167 0.22026667 0.14996667 -0.07030000 0.780760701 0.003488913 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000119397 E001 0.7341808 0.1812929983 5.401660e-01 6.713430e-01 9 121074660 121074879 220 + 0.199 0.316 0.882
ENSG00000119397 E002 0.2924217 0.0290785164 6.702550e-01   9 121074880 121074895 16 + 0.142 0.000 -12.351
ENSG00000119397 E003 0.4375944 0.0249626148 3.999142e-01 5.436424e-01 9 121074896 121074954 59 + 0.199 0.000 -12.933
ENSG00000119397 E004 0.2903454 0.3211318497 7.819861e-01   9 121074955 121074958 4 + 0.142 0.000 -12.355
ENSG00000119397 E005 0.4355181 0.5910082119 6.876850e-01 7.899675e-01 9 121074959 121074961 3 + 0.198 0.000 -12.935
ENSG00000119397 E006 0.4355181 0.5910082119 6.876850e-01 7.899675e-01 9 121074962 121074967 6 + 0.198 0.000 -12.935
ENSG00000119397 E007 2.8724963 0.0433656254 2.646971e-02 6.488712e-02 9 121074968 121075000 33 + 0.652 0.190 -2.673
ENSG00000119397 E008 3.0207895 0.0391992780 9.734964e-02 1.864282e-01 9 121075001 121075004 4 + 0.652 0.321 -1.677
ENSG00000119397 E009 4.2772443 0.0036548686 4.305880e-02 9.665692e-02 9 121075005 121075067 63 + 0.767 0.421 -1.567
ENSG00000119397 E010 1.9197753 0.0074670285 9.066160e-02 1.761651e-01 9 121080306 121080307 2 + 0.522 0.189 -2.094
ENSG00000119397 E011 1.9197753 0.0074670285 9.066160e-02 1.761651e-01 9 121080308 121080311 4 + 0.522 0.189 -2.094
ENSG00000119397 E012 3.5679685 0.0070703373 2.843157e-02 6.887988e-02 9 121080312 121080427 116 + 0.722 0.320 -1.968
ENSG00000119397 E013 2.6518903 0.0056683249 4.135497e-01 5.570144e-01 9 121080428 121080478 51 + 0.496 0.631 0.616
ENSG00000119397 E014 7.5255056 0.0028196043 1.020994e-01 1.937013e-01 9 121088296 121088543 248 + 0.952 0.730 -0.866
ENSG00000119397 E015 6.0332106 0.0035959695 1.110802e-02 3.142555e-02 9 121090275 121090405 131 + 0.902 0.503 -1.679
ENSG00000119397 E016 6.1954620 0.0328154594 1.839108e-02 4.799215e-02 9 121094888 121095018 131 + 0.913 0.503 -1.721
ENSG00000119397 E017 7.3863526 0.0442340343 2.159853e-02 5.484736e-02 9 121096422 121096563 142 + 0.971 0.574 -1.605
ENSG00000119397 E018 7.4438244 0.0432358693 5.099155e-02 1.109316e-01 9 121098386 121098572 187 + 0.962 0.634 -1.303
ENSG00000119397 E019 0.0000000       9 121098573 121098850 278 +      
ENSG00000119397 E020 6.9557532 0.0024356758 3.636104e-02 8.427010e-02 9 121107802 121107995 194 + 0.933 0.631 -1.209
ENSG00000119397 E021 0.5996172 0.5727157325 4.594081e-01 5.995694e-01 9 121107996 121108459 464 + 0.143 0.310 1.412
ENSG00000119397 E022 0.1451727 0.0430754996 1.000000e+00   9 121110515 121110536 22 + 0.077 0.000 -11.356
ENSG00000119397 E023 0.1451727 0.0430754996 1.000000e+00   9 121110537 121110571 35 + 0.077 0.000 -11.356
ENSG00000119397 E024 0.4396707 0.0260094439 3.997951e-01 5.435195e-01 9 121110572 121111062 491 + 0.199 0.000 -12.933
ENSG00000119397 E025 0.0000000       9 121111063 121111274 212 +      
ENSG00000119397 E026 0.0000000       9 121111275 121112458 1184 +      
ENSG00000119397 E027 4.3202455 0.0039507852 1.293126e-01 2.332132e-01 9 121112459 121112578 120 + 0.753 0.503 -1.093
ENSG00000119397 E028 0.0000000       9 121112579 121113501 923 +      
ENSG00000119397 E029 5.0850707 0.0260857854 2.120455e-02 5.402356e-02 9 121113502 121113724 223 + 0.834 0.422 -1.826
ENSG00000119397 E030 3.5191286 0.0047081196 3.464557e-02 8.097987e-02 9 121115091 121115200 110 + 0.706 0.321 -1.901
ENSG00000119397 E031 7.2372631 0.0043045146 2.341328e-01 3.672990e-01 9 121118346 121118540 195 + 0.933 0.771 -0.626
ENSG00000119397 E032 0.5911862 0.0184133097 2.543026e-01 3.909603e-01 9 121121793 121121795 3 + 0.250 0.000 -13.345
ENSG00000119397 E033 0.5911862 0.0184133097 2.543026e-01 3.909603e-01 9 121121796 121121808 13 + 0.250 0.000 -13.345
ENSG00000119397 E034 1.9511102 0.0073276994 9.032754e-02 1.756395e-01 9 121121809 121121875 67 + 0.522 0.189 -2.093
ENSG00000119397 E035 3.4301681 0.0045137607 3.777132e-01 5.220292e-01 9 121121876 121121951 76 + 0.653 0.503 -0.678
ENSG00000119397 E036 0.4439371 0.0215870469 3.978189e-01 5.415723e-01 9 121122395 121122426 32 + 0.199 0.000 -12.933
ENSG00000119397 E037 12.5623412 0.0016070754 4.415370e-02 9.867043e-02 9 121123931 121124084 154 + 1.158 0.936 -0.810
ENSG00000119397 E038 14.7817881 0.0367669284 2.716305e-02 6.632844e-02 9 121125716 121125936 221 + 1.238 0.934 -1.101
ENSG00000119397 E039 9.0984715 0.0022872734 5.806672e-03 1.810477e-02 9 121135806 121135982 177 + 1.053 0.683 -1.429
ENSG00000119397 E040 7.8595056 0.0520478701 1.450157e-01 2.548544e-01 9 121138545 121138661 117 + 0.970 0.733 -0.917
ENSG00000119397 E041 4.5226626 0.0092918458 2.639438e-01 4.018722e-01 9 121138662 121138679 18 + 0.753 0.572 -0.769
ENSG00000119397 E042 9.8598199 0.0033706612 4.568411e-02 1.014562e-01 9 121140641 121140786 146 + 1.060 0.810 -0.940
ENSG00000119397 E043 7.1956349 0.0022743123 2.492965e-02 6.172770e-02 9 121141381 121141429 49 + 0.952 0.631 -1.281
ENSG00000119397 E044 12.1802029 0.0014595424 4.522407e-02 1.006031e-01 9 121141430 121141588 159 + 1.134 0.908 -0.830
ENSG00000119397 E045 12.5291175 0.0014846509 1.367062e-02 3.747336e-02 9 121142091 121142270 180 + 1.158 0.878 -1.032
ENSG00000119397 E046 11.9836467 0.0014356507 1.867806e-01 3.096887e-01 9 121143903 121144052 150 + 1.109 0.963 -0.531
ENSG00000119397 E047 6.0058757 0.0028035128 4.217873e-02 9.505191e-02 9 121144053 121144082 30 + 0.881 0.572 -1.273
ENSG00000119397 E048 0.3686942 0.0281797738 4.497505e-01 5.909468e-01 9 121144083 121144242 160 + 0.077 0.189 1.494
ENSG00000119397 E049 9.7077648 0.0017324607 1.009445e-01 1.919119e-01 9 121144843 121144959 117 + 1.045 0.845 -0.749
ENSG00000119397 E050 12.2394495 0.0014177715 1.324895e-01 2.375451e-01 9 121145244 121145385 142 + 1.128 0.963 -0.601
ENSG00000119397 E051 12.3500676 0.0014700789 2.946103e-02 7.089542e-02 9 121146108 121146256 149 + 1.152 0.908 -0.896
ENSG00000119397 E052 3.9243811 0.0081238316 4.136389e-01 5.570911e-01 9 121146257 121148671 2415 + 0.706 0.571 -0.581
ENSG00000119397 E053 14.6291983 0.0012335189 5.585725e-02 1.194436e-01 9 121148672 121148861 190 + 1.208 1.012 -0.706
ENSG00000119397 E054 13.5407402 0.0015679411 3.482739e-01 4.924916e-01 9 121150170 121150305 136 + 1.152 1.056 -0.348
ENSG00000119397 E055 14.8360358 0.0013007557 1.752164e-01 2.949600e-01 9 121150306 121150483 178 + 1.115 1.240 0.445
ENSG00000119397 E056 0.7760110 0.0170371702 5.072937e-01 6.428783e-01 9 121150484 121150654 171 + 0.199 0.320 0.905
ENSG00000119397 E057 0.2987644 0.0274807132 6.682893e-01   9 121152043 121152484 442 + 0.142 0.000 -12.352
ENSG00000119397 E058 11.9625244 0.0015595111 1.083560e-01 2.031079e-01 9 121152485 121152693 209 + 1.022 1.182 0.577
ENSG00000119397 E059 9.0299951 0.0214721818 4.303901e-01 5.730373e-01 9 121154721 121154815 95 + 0.933 1.035 0.375
ENSG00000119397 E060 11.1146378 0.0119729373 8.599615e-01 9.136945e-01 9 121154816 121154913 98 + 1.053 1.035 -0.065
ENSG00000119397 E061 0.0000000       9 121157458 121157469 12 +      
ENSG00000119397 E062 7.6988171 0.0176218880 2.015315e-01 3.280932e-01 9 121157470 121157509 40 + 0.952 0.772 -0.693
ENSG00000119397 E063 11.4389446 0.1067215384 8.733153e-01 9.226037e-01 9 121157510 121157600 91 + 1.045 1.086 0.150
ENSG00000119397 E064 0.0000000       9 121157601 121157739 139 +      
ENSG00000119397 E065 6.9626817 0.0577878627 7.438934e-01 8.323964e-01 9 121157740 121157749 10 + 0.834 0.915 0.312
ENSG00000119397 E066 12.8371473 0.0503954083 3.389462e-01 4.828576e-01 9 121157750 121157880 131 + 1.046 1.205 0.574
ENSG00000119397 E067 0.0000000       9 121157881 121157963 83 +      
ENSG00000119397 E068 0.0000000       9 121157964 121157982 19 +      
ENSG00000119397 E069 12.6690367 0.0015709268 6.133877e-01 7.320658e-01 9 121157983 121158109 127 + 1.081 1.132 0.182
ENSG00000119397 E070 0.9609246 0.0136968632 7.013562e-01 8.005556e-01 9 121158110 121158585 476 + 0.250 0.320 0.492
ENSG00000119397 E071 0.4449813 0.0221494762 7.734766e-01 8.538462e-01 9 121158586 121158854 269 + 0.142 0.189 0.489
ENSG00000119397 E072 14.7002719 0.0032983971 9.808024e-01 9.919870e-01 9 121158855 121159019 165 + 1.164 1.165 0.005
ENSG00000119397 E073 3.6536155 0.0043669399 8.932871e-01 9.358312e-01 9 121160143 121160147 5 + 0.653 0.631 -0.094
ENSG00000119397 E074 14.1643555 0.0013132729 9.723143e-01 9.867257e-01 9 121160148 121160302 155 + 1.146 1.149 0.010
ENSG00000119397 E075 0.2966881 0.0272946053 6.689027e-01   9 121161283 121161505 223 + 0.142 0.000 -12.352
ENSG00000119397 E076 0.3030308 0.4434974648 8.124280e-01   9 121161533 121161625 93 + 0.143 0.000 -12.371
ENSG00000119397 E077 13.5983650 0.0015481442 4.891145e-01 6.266062e-01 9 121161856 121161971 116 + 1.146 1.076 -0.252
ENSG00000119397 E078 0.1451727 0.0430754996 1.000000e+00   9 121161972 121162053 82 + 0.077 0.000 -11.356
ENSG00000119397 E079 20.8085690 0.0011568335 8.269452e-01 8.911494e-01 9 121162054 121162271 218 + 1.310 1.291 -0.065
ENSG00000119397 E080 10.2986312 0.0017900067 8.452196e-01 9.037177e-01 9 121164943 121164995 53 + 1.013 1.034 0.076
ENSG00000119397 E081 13.6903141 0.0012498622 5.539539e-01 6.830127e-01 9 121164996 121165100 105 + 1.109 1.166 0.205
ENSG00000119397 E082 0.0000000       9 121165101 121165109 9 +      
ENSG00000119397 E083 16.4484529 0.0011890559 3.008382e-01 4.426043e-01 9 121166107 121166180 74 + 1.175 1.266 0.322
ENSG00000119397 E084 0.4396707 0.0260094439 3.997951e-01 5.435195e-01 9 121167464 121167488 25 + 0.199 0.000 -12.933
ENSG00000119397 E085 26.2056920 0.0200483592 1.886104e-02 4.902877e-02 9 121167489 121167677 189 + 1.309 1.536 0.782
ENSG00000119397 E086 24.5831800 0.0226948802 1.639923e-03 6.089017e-03 9 121168096 121168290 195 + 1.242 1.558 1.093
ENSG00000119397 E087 11.8193363 0.0031371230 7.061503e-02 1.443659e-01 9 121168291 121168321 31 + 0.997 1.182 0.672
ENSG00000119397 E088 24.4003363 0.0009158206 3.032354e-04 1.392588e-03 9 121169611 121169816 206 + 1.262 1.522 0.900
ENSG00000119397 E089 0.4375944 0.0249626148 3.999142e-01 5.436424e-01 9 121169817 121169925 109 + 0.199 0.000 -12.933
ENSG00000119397 E090 1.0246279 0.1163516821 1.096893e-01 2.051040e-01 9 121170549 121171005 457 + 0.372 0.000 -14.143
ENSG00000119397 E091 1.6253765 0.0246670836 6.541143e-01 7.643909e-01 9 121171006 121171158 153 + 0.407 0.321 -0.503
ENSG00000119397 E092 1.5585526 0.1145870516 7.137211e-01 8.101254e-01 9 121171159 121171203 45 + 0.336 0.427 0.522
ENSG00000119397 E093 0.7416549 0.0577412084 3.307005e-01 4.742995e-01 9 121171204 121171231 28 + 0.142 0.322 1.503
ENSG00000119397 E094 1.3477166 0.5036076398 9.867370e-01 9.957716e-01 9 121171232 121171407 176 + 0.338 0.333 -0.026
ENSG00000119397 E095 13.2066033 0.0014379077 7.689205e-03 2.299733e-02 9 121171408 121171548 141 + 1.013 1.267 0.908
ENSG00000119397 E096 7.0054057 0.0024487526 8.541210e-01 9.097437e-01 9 121171549 121173242 1694 + 0.869 0.846 -0.093
ENSG00000119397 E097 33.5428375 0.0006881288 9.692660e-03 2.800478e-02 9 121173243 121173509 267 + 1.438 1.600 0.555
ENSG00000119397 E098 0.3030308 0.4434974648 8.124280e-01   9 121173510 121173674 165 + 0.143 0.000 -12.371
ENSG00000119397 E099 18.1428977 0.0012123969 3.922271e-02 8.959361e-02 9 121173675 121173737 63 + 1.175 1.348 0.608
ENSG00000119397 E100 4.8164927 0.0083290075 7.191516e-01 8.140651e-01 9 121173738 121175017 1280 + 0.738 0.684 -0.222
ENSG00000119397 E101 26.6377843 0.0073003403 9.893427e-05 5.168432e-04 9 121175018 121175224 207 + 1.280 1.584 1.051
ENSG00000119397 E102 0.8386677 0.2267232723 5.111963e-01 6.462886e-01 9 121175225 121176915 1691 + 0.199 0.324 0.936
ENSG00000119397 E103 26.7656135 0.0027356817 7.548181e-10 1.145359e-08 9 121177163 121177774 612 + 1.228 1.655 1.475