ENSG00000117139

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000367264 ENSG00000117139 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5B protein_coding protein_coding 12.65626 12.55236 11.70621 1.336276 0.3914321 -0.1006017 1.0357792 0.9815148 0.9226316 0.2822625 0.2408066 -0.08832694 0.08198750 0.07566667 0.0797000 0.004033333 1.000000e+00 2.363373e-14 FALSE TRUE
ENST00000649542 ENSG00000117139 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5B protein_coding processed_transcript 12.65626 12.55236 11.70621 1.336276 0.3914321 -0.1006017 6.2494609 7.5415779 3.7203092 0.4787688 0.3451737 -1.01748290 0.48916250 0.60666667 0.3202000 -0.286466667 1.189078e-04 2.363373e-14 FALSE TRUE
ENST00000650569 ENSG00000117139 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5B protein_coding protein_coding 12.65626 12.55236 11.70621 1.336276 0.3914321 -0.1006017 2.1116065 2.0991854 2.2486686 0.7991031 0.5275106 0.09878667 0.16255417 0.16490000 0.1917667 0.026866667 8.674860e-01 2.363373e-14 FALSE TRUE
MSTRG.2859.19 ENSG00000117139 HEK293_OSMI2_2hA HEK293_TMG_2hB KDM5B protein_coding   12.65626 12.55236 11.70621 1.336276 0.3914321 -0.1006017 0.6255777 0.0000000 1.9918832 0.0000000 0.3517264 7.64521399 0.05086667 0.00000000 0.1725667 0.172566667 2.363373e-14 2.363373e-14 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000117139 E001 0.1482932 0.0416019889 5.860227e-01   1 202724495 202724713 219 - 0.000 0.112 9.810
ENSG00000117139 E002 0.4417591 0.0994191717 7.242775e-01 8.178395e-01 1 202724714 202724886 173 - 0.134 0.199 0.693
ENSG00000117139 E003 17.6046497 0.0015389311 7.671164e-04 3.140324e-03 1 202724887 202726503 1617 - 1.072 1.368 1.047
ENSG00000117139 E004 12.6959005 0.0013619379 1.499556e-01 2.616145e-01 1 202726504 202727403 900 - 1.045 1.188 0.514
ENSG00000117139 E005 1.3683405 0.0098992722 7.658318e-01 8.485021e-01 1 202727404 202727404 1 - 0.387 0.338 -0.291
ENSG00000117139 E006 1.5500449 0.0088765619 9.895060e-01 9.974616e-01 1 202727405 202727411 7 - 0.387 0.393 0.031
ENSG00000117139 E007 1.5468227 0.0089799098 4.945701e-01 6.314945e-01 1 202727412 202727416 5 - 0.318 0.442 0.708
ENSG00000117139 E008 1.8423649 0.0078533979 5.835004e-01 7.076117e-01 1 202727417 202727426 10 - 0.387 0.485 0.515
ENSG00000117139 E009 6.2395437 0.0039254907 3.471984e-01 4.913767e-01 1 202727427 202727434 8 - 0.781 0.906 0.484
ENSG00000117139 E010 14.9470015 0.0190611704 2.516494e-02 6.221922e-02 1 202727435 202727444 10 - 1.031 1.287 0.916
ENSG00000117139 E011 15.4263364 0.0283927504 1.729976e-02 4.560361e-02 1 202727445 202727447 3 - 1.016 1.310 1.051
ENSG00000117139 E012 36.5356161 0.0236114813 4.499331e-05 2.563255e-04 1 202727448 202727493 46 - 1.279 1.697 1.436
ENSG00000117139 E013 78.7538473 0.0203560833 2.825204e-08 3.196527e-07 1 202727494 202727582 89 - 1.552 2.035 1.633
ENSG00000117139 E014 101.2823651 0.0152173134 1.260473e-11 2.581824e-10 1 202727583 202727674 92 - 1.635 2.148 1.727
ENSG00000117139 E015 267.7555450 0.0028815280 2.713232e-26 3.309811e-24 1 202727675 202728203 529 - 2.165 2.540 1.254
ENSG00000117139 E016 98.0154365 0.0003914257 1.237025e-12 2.990312e-11 1 202728204 202728290 87 - 1.806 2.084 0.935
ENSG00000117139 E017 119.5002809 0.0003270284 3.986467e-15 1.391862e-13 1 202728291 202728447 157 - 1.888 2.168 0.936
ENSG00000117139 E018 75.0579448 0.0009870004 6.389643e-08 6.739220e-07 1 202728448 202728480 33 - 1.708 1.956 0.837
ENSG00000117139 E019 138.1616731 0.0010230074 1.919442e-15 6.991587e-14 1 202728481 202728614 134 - 1.949 2.233 0.951
ENSG00000117139 E020 118.1590629 0.0069723436 7.050944e-06 4.852442e-05 1 202728615 202728697 83 - 1.912 2.154 0.811
ENSG00000117139 E021 88.6954318 0.0062161321 1.413387e-04 7.093219e-04 1 202728698 202728737 40 - 1.811 2.019 0.702
ENSG00000117139 E022 236.6187732 0.0025240255 4.351936e-10 6.890031e-09 1 202728738 202729103 366 - 2.231 2.443 0.706
ENSG00000117139 E023 96.0050322 0.0009825316 6.547293e-06 4.539304e-05 1 202729104 202729173 70 - 1.861 2.046 0.621
ENSG00000117139 E024 2.8773995 0.0089276210 6.497684e-01 7.609173e-01 1 202729174 202729474 301 - 0.628 0.562 -0.294
ENSG00000117139 E025 2.6475222 0.0079277091 4.983147e-01 6.347996e-01 1 202729475 202729706 232 - 0.627 0.525 -0.464
ENSG00000117139 E026 144.1770067 0.0003398425 3.933097e-04 1.749134e-03 1 202729707 202729904 198 - 2.086 2.201 0.383
ENSG00000117139 E027 126.3534285 0.0002997260 3.881198e-02 8.883750e-02 1 202729905 202730027 123 - 2.054 2.127 0.242
ENSG00000117139 E028 0.1451727 0.0430885114 4.052448e-01   1 202730028 202730908 881 - 0.134 0.000 -13.839
ENSG00000117139 E029 130.2526261 0.0002625094 1.622896e-01 2.780993e-01 1 202730909 202731063 155 - 2.080 2.130 0.167
ENSG00000117139 E030 1.2115291 0.0108647759 8.481159e-02 1.671031e-01 1 202731064 202731827 764 - 0.500 0.201 -1.878
ENSG00000117139 E031 100.2757072 0.0003265208 5.824411e-02 1.236161e-01 1 202731828 202731939 112 - 1.952 2.026 0.249
ENSG00000117139 E032 5.0842214 0.0135824390 2.679773e-01 4.063643e-01 1 202731940 202733400 1461 - 0.874 0.731 -0.564
ENSG00000117139 E033 206.0600273 0.0002204239 5.825754e-02 1.236385e-01 1 202733401 202733886 486 - 2.277 2.331 0.179
ENSG00000117139 E034 1.1436611 0.2006390838 2.859976e-01 4.263599e-01 1 202733887 202734315 429 - 0.447 0.203 -1.593
ENSG00000117139 E035 0.6224193 0.0172671820 8.294755e-01 8.929264e-01 1 202735172 202735428 257 - 0.236 0.201 -0.293
ENSG00000117139 E036 82.2122941 0.0003165240 6.647365e-01 7.725152e-01 1 202735429 202735504 76 - 1.920 1.908 -0.038
ENSG00000117139 E037 83.2518055 0.0003176094 8.844874e-01 9.301690e-01 1 202735505 202735587 83 - 1.918 1.918 0.000
ENSG00000117139 E038 122.8752874 0.0002526501 1.507991e-01 2.627586e-01 1 202736213 202736392 180 - 2.110 2.070 -0.135
ENSG00000117139 E039 92.8555408 0.0030611488 1.205833e-01 2.208017e-01 1 202740674 202740812 139 - 2.003 1.936 -0.224
ENSG00000117139 E040 100.1120365 0.0075730872 6.149909e-01 7.333628e-01 1 202741367 202741545 179 - 2.012 1.984 -0.093
ENSG00000117139 E041 93.0797810 0.0003333485 8.199094e-01 8.863264e-01 1 202741546 202741722 177 - 1.957 1.971 0.047
ENSG00000117139 E042 69.2738618 0.0004164572 1.212015e-01 2.216526e-01 1 202742391 202742505 115 - 1.874 1.814 -0.204
ENSG00000117139 E043 78.0514055 0.0018877813 6.348618e-02 1.325056e-01 1 202742655 202742805 151 - 1.933 1.854 -0.265
ENSG00000117139 E044 0.2214452 0.0499883573 5.825243e-01   1 202742806 202743304 499 - 0.000 0.112 12.448
ENSG00000117139 E045 0.1817044 0.0390218105 5.849167e-01   1 202745555 202745857 303 - 0.000 0.112 12.532
ENSG00000117139 E046 92.8165022 0.0158408532 1.372936e-01 2.443090e-01 1 202745858 202745976 119 - 2.020 1.917 -0.348
ENSG00000117139 E047 47.6013426 0.0028673137 5.884991e-04 2.491494e-03 1 202745977 202745982 6 - 1.779 1.591 -0.637
ENSG00000117139 E048 112.7322066 0.0074928160 5.927411e-03 1.841718e-02 1 202746142 202746323 182 - 2.126 1.982 -0.483
ENSG00000117139 E049 0.9264823 0.0774262357 6.781826e-02 1.397445e-01 1 202746324 202747565 1242 - 0.447 0.112 -2.614
ENSG00000117139 E050 0.4375944 0.0247798732 5.746878e-02 1.222960e-01 1 202748397 202748944 548 - 0.318 0.000 -15.579
ENSG00000117139 E051 90.9934015 0.0030370684 1.338457e-03 5.104615e-03 1 202748945 202749139 195 - 2.032 1.893 -0.465
ENSG00000117139 E052 75.0437507 0.0007212332 1.561186e-07 1.527854e-06 1 202750659 202750778 120 - 1.987 1.775 -0.716
ENSG00000117139 E053 64.1617725 0.0003892823 1.918064e-09 2.695834e-08 1 202752905 202753030 126 - 1.942 1.684 -0.868
ENSG00000117139 E054 37.7130742 0.0006127302 3.728134e-03 1.237791e-02 1 202753031 202753067 37 - 1.666 1.508 -0.541
ENSG00000117139 E055 0.3268771 0.0286366954 8.755723e-01   1 202754997 202755270 274 - 0.134 0.112 -0.291
ENSG00000117139 E056 83.7881800 0.0003658254 6.185846e-06 4.314129e-05 1 202755271 202755452 182 - 2.014 1.846 -0.566
ENSG00000117139 E057 92.7053012 0.0025441512 3.916888e-05 2.262808e-04 1 202756358 202756516 159 - 2.060 1.888 -0.576
ENSG00000117139 E058 0.0000000       1 202758269 202758390 122 -      
ENSG00000117139 E059 58.7290007 0.0083485246 1.134855e-07 1.141384e-06 1 202758391 202758439 49 - 1.936 1.605 -1.119
ENSG00000117139 E060 59.7506498 0.0098315843 2.101821e-06 1.627232e-05 1 202758440 202758510 71 - 1.932 1.621 -1.053
ENSG00000117139 E061 0.0000000       1 202758511 202758876 366 -      
ENSG00000117139 E062 0.0000000       1 202758877 202759324 448 -      
ENSG00000117139 E063 67.9145967 0.0073847757 7.154869e-06 4.915392e-05 1 202760415 202760529 115 - 1.966 1.706 -0.876
ENSG00000117139 E064 39.1547940 0.0006068697 3.156796e-07 2.907650e-06 1 202760530 202760573 44 - 1.740 1.461 -0.951
ENSG00000117139 E065 56.2688572 0.0007608494 8.224493e-11 1.472411e-09 1 202762699 202762808 110 - 1.906 1.603 -1.025
ENSG00000117139 E066 0.1451727 0.0430885114 4.052448e-01   1 202762809 202762945 137 - 0.134 0.000 -13.839
ENSG00000117139 E067 33.4756374 0.0009368257 2.747248e-06 2.074612e-05 1 202764049 202764073 25 - 1.673 1.395 -0.952
ENSG00000117139 E068 48.8274802 0.0005690521 1.994005e-09 2.792212e-08 1 202764074 202764145 72 - 1.842 1.545 -1.004
ENSG00000117139 E069 4.8017178 0.0831547861 8.575871e-03 2.522863e-02 1 202764146 202766396 2251 - 0.967 0.491 -1.983
ENSG00000117139 E070 4.7607649 0.0035270505 6.975414e-01 7.976456e-01 1 202766397 202766504 108 - 0.781 0.733 -0.193
ENSG00000117139 E071 1.5531680 0.0097085436 1.096414e-01 2.050380e-01 1 202766505 202766925 421 - 0.547 0.275 -1.515
ENSG00000117139 E072 50.6923822 0.0005578893 1.202127e-07 1.202996e-06 1 202766926 202767030 105 - 1.844 1.590 -0.859
ENSG00000117139 E073 36.5538592 0.0078987272 1.023044e-03 4.038269e-03 1 202767031 202767051 21 - 1.692 1.471 -0.756
ENSG00000117139 E074 32.8040387 0.0296633009 2.705981e-02 6.611412e-02 1 202767052 202767060 9 - 1.638 1.431 -0.710
ENSG00000117139 E075 0.5138669 0.0206597628 4.533429e-01 5.940765e-01 1 202767061 202767209 149 - 0.236 0.112 -1.290
ENSG00000117139 E076 1.7985731 0.0501468631 5.561568e-01 6.848775e-01 1 202770097 202770925 829 - 0.500 0.393 -0.551
ENSG00000117139 E077 2.7990612 0.0068354939 4.476788e-01 5.890499e-01 1 202770926 202772694 1769 - 0.500 0.627 0.581
ENSG00000117139 E078 0.9556391 0.0121989077 7.914741e-01 8.666088e-01 1 202772695 202773053 359 - 0.318 0.275 -0.293
ENSG00000117139 E079 0.3634088 0.2689536342 3.334023e-01   1 202773054 202773117 64 - 0.000 0.202 12.625
ENSG00000117139 E080 55.1110798 0.0143462658 2.562628e-05 1.549527e-04 1 202773118 202773188 71 - 1.898 1.599 -1.014
ENSG00000117139 E081 41.5590505 0.0035017064 1.301799e-05 8.417992e-05 1 202773189 202773216 28 - 1.757 1.503 -0.865
ENSG00000117139 E082 58.7694071 0.0048087313 5.540243e-08 5.911475e-07 1 202773217 202773284 68 - 1.921 1.622 -1.011
ENSG00000117139 E083 34.5694223 0.0033367406 7.244668e-10 1.103546e-08 1 202773285 202773288 4 - 1.732 1.335 -1.359
ENSG00000117139 E084 37.1264143 0.0053132468 1.366419e-08 1.642330e-07 1 202774613 202774629 17 - 1.754 1.380 -1.279
ENSG00000117139 E085 61.1023143 0.0239843052 6.220277e-07 5.400609e-06 1 202774630 202774735 106 - 1.986 1.565 -1.422
ENSG00000117139 E086 0.0000000       1 202776105 202776220 116 -      
ENSG00000117139 E087 40.5907369 0.0294733967 2.450717e-05 1.489942e-04 1 202777017 202777094 78 - 1.806 1.405 -1.367
ENSG00000117139 E088 0.1482932 0.0416019889 5.860227e-01   1 202777095 202777581 487 - 0.000 0.112 12.507
ENSG00000117139 E089 0.3697384 0.0257020516 2.623296e-01 4.001117e-01 1 202806490 202806976 487 - 0.000 0.201 13.633
ENSG00000117139 E090 0.1472490 0.0435352228 4.047055e-01   1 202806977 202807348 372 - 0.134 0.000 -13.835
ENSG00000117139 E091 0.0000000       1 202807963 202808101 139 -      
ENSG00000117139 E092 21.0718742 0.0180742341 2.976726e-04 1.370230e-03 1 202808102 202808116 15 - 1.509 1.163 -1.208
ENSG00000117139 E093 46.6574553 0.0183319604 1.390626e-07 1.374999e-06 1 202808117 202808487 371 - 1.874 1.445 -1.457