ENSG00000117114

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000464551 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding processed_transcript 10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 0.1737005 0.7446134 0.0000000 0.3775189 0.0000000 -6.2376658 0.04401667 0.19333333 0.00000000 -0.19333333 5.126707e-02 5.76765e-24 FALSE TRUE
ENST00000468283 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding processed_transcript 10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 0.5409253 0.0000000 0.8447634 0.0000000 0.8447634 6.4174533 0.03595833 0.00000000 0.05680000 0.05680000 1.000000e+00 5.76765e-24 FALSE FALSE
MSTRG.1489.34 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding   10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 2.5903957 1.1177990 0.0000000 0.1250765 0.0000000 -6.8173662 0.22389583 0.31080000 0.00000000 -0.31080000 5.767650e-24 5.76765e-24 FALSE TRUE
MSTRG.1489.35 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding   10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 0.4841795 0.0000000 0.8639520 0.0000000 0.8639520 6.4494821 0.03753333 0.00000000 0.06903333 0.06903333 1.000000e+00 5.76765e-24 FALSE TRUE
MSTRG.1489.37 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding   10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 1.7274542 0.1006228 3.7887007 0.1006228 0.5482032 5.1017852 0.13007917 0.02623333 0.28520000 0.25896667 2.120010e-02 5.76765e-24 FALSE TRUE
MSTRG.1489.46 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding   10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 0.7990389 0.0000000 1.5386738 0.0000000 0.5041175 7.2748895 0.07120000 0.00000000 0.11936667 0.11936667 1.000961e-04 5.76765e-24 FALSE TRUE
MSTRG.1489.47 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding   10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 0.4477227 0.0000000 2.7648979 0.0000000 0.1205973 8.1162909 0.03403750 0.00000000 0.20856667 0.20856667 1.173712e-17 5.76765e-24 FALSE TRUE
MSTRG.1489.49 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding   10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 0.9469817 0.4029987 1.3380541 0.2244288 0.8746218 1.7066692 0.08167917 0.11813333 0.09430000 -0.02383333 9.774452e-01 5.76765e-24 FALSE TRUE
MSTRG.1489.52 ENSG00000117114 HEK293_OSMI2_2hA HEK293_TMG_2hB ADGRL2 protein_coding   10.91132 3.637479 13.30487 0.2131299 0.7822991 1.868067 1.2385565 0.8306618 0.7115408 0.0866469 0.7115408 -0.2204446 0.13274583 0.23296667 0.05680000 -0.17616667 1.111409e-01 5.76765e-24 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000117114 E001 0.0000000       1 81306147 81306149 3 +      
ENSG00000117114 E002 0.0000000       1 81306150 81306159 10 +      
ENSG00000117114 E003 0.0000000       1 81306160 81306165 6 +      
ENSG00000117114 E004 0.0000000       1 81306166 81306191 26 +      
ENSG00000117114 E005 0.0000000       1 81306192 81306198 7 +      
ENSG00000117114 E006 0.0000000       1 81306199 81306509 311 +      
ENSG00000117114 E007 0.0000000       1 81326717 81326775 59 +      
ENSG00000117114 E008 0.0000000       1 81414171 81414274 104 +      
ENSG00000117114 E009 0.0000000       1 81414275 81414351 77 +      
ENSG00000117114 E010 0.0000000       1 81414352 81414384 33 +      
ENSG00000117114 E011 0.0000000       1 81445021 81445035 15 +      
ENSG00000117114 E012 0.1472490 0.0428512778 1.000000e+00   1 81445036 81445089 54 + 0.061 0.000 -9.203
ENSG00000117114 E013 0.1472490 0.0428512778 1.000000e+00   1 81466893 81466945 53 + 0.061 0.000 -10.976
ENSG00000117114 E014 0.2966881 0.0290785164 1.000000e+00   1 81484283 81484722 440 + 0.115 0.000 -12.046
ENSG00000117114 E015 0.0000000       1 81579300 81579380 81 +      
ENSG00000117114 E016 0.0000000       1 81580876 81580980 105 +      
ENSG00000117114 E017 0.0000000       1 81699747 81699769 23 +      
ENSG00000117114 E018 0.0000000       1 81699770 81699808 39 +      
ENSG00000117114 E019 0.0000000       1 81726107 81727814 1708 +      
ENSG00000117114 E020 0.0000000       1 81735090 81735330 241 +      
ENSG00000117114 E021 0.0000000       1 81761811 81761852 42 +      
ENSG00000117114 E022 0.0000000       1 81761853 81762544 692 +      
ENSG00000117114 E023 0.0000000       1 81800376 81800377 2 +      
ENSG00000117114 E024 0.8868276 0.0165209480 3.263818e-01 4.698229e-01 1 81800378 81800396 19 + 0.162 0.381 1.636
ENSG00000117114 E025 0.8868276 0.0165209480 3.263818e-01 4.698229e-01 1 81800397 81800406 10 + 0.162 0.381 1.636
ENSG00000117114 E026 1.0320003 0.0182626778 4.707421e-01 6.099618e-01 1 81800407 81800429 23 + 0.205 0.382 1.222
ENSG00000117114 E027 1.4822801 0.0097788350 9.026267e-01 9.419979e-01 1 81800430 81800479 50 + 0.313 0.381 0.412
ENSG00000117114 E028 1.2910239 0.0102137736 7.630593e-01 8.465245e-01 1 81800480 81800512 33 + 0.280 0.381 0.634
ENSG00000117114 E029 0.8010032 0.1397772141 3.660776e-01 5.104201e-01 1 81800651 81800704 54 + 0.162 0.382 1.640
ENSG00000117114 E030 0.0000000       1 81800705 81800727 23 +      
ENSG00000117114 E031 0.1451727 0.0427310856 1.000000e+00   1 81800728 81800761 34 + 0.061 0.000 -10.977
ENSG00000117114 E032 0.1451727 0.0427310856 1.000000e+00   1 81800928 81800933 6 + 0.061 0.000 -10.977
ENSG00000117114 E033 0.1451727 0.0427310856 1.000000e+00   1 81800934 81800943 10 + 0.061 0.000 -10.977
ENSG00000117114 E034 0.4418608 0.0274525997 5.817847e-01 7.062768e-01 1 81800944 81800951 8 + 0.162 0.000 -12.613
ENSG00000117114 E035 1.7757486 0.0076534703 3.685053e-02 8.518568e-02 1 81800952 81800966 15 + 0.449 0.000 -14.539
ENSG00000117114 E036 3.1054837 0.0049333788 3.656825e-03 1.217402e-02 1 81800967 81800986 20 + 0.620 0.000 -15.185
ENSG00000117114 E037 3.5494208 0.0043690463 1.734150e-03 6.390383e-03 1 81800987 81800997 11 + 0.665 0.000 -15.330
ENSG00000117114 E038 5.0953025 0.0039772505 1.669749e-02 4.426781e-02 1 81800998 81801068 71 + 0.766 0.381 -1.782
ENSG00000117114 E039 0.1451727 0.0427310856 1.000000e+00   1 81801233 81801286 54 + 0.061 0.000 -10.977
ENSG00000117114 E040 11.4374178 0.0015978184 5.297461e-02 1.144375e-01 1 81801642 81801655 14 + 1.040 0.864 -0.656
ENSG00000117114 E041 6.4561450 0.0026073295 2.882981e-03 9.919580e-03 1 81801914 81801925 12 + 0.856 0.381 -2.139
ENSG00000117114 E042 6.7894785 0.0025043582 9.818705e-03 2.831627e-02 1 81801926 81801950 25 + 0.866 0.492 -1.589
ENSG00000117114 E043 8.7749198 0.0020618691 1.156788e-04 5.940473e-04 1 81801951 81802013 63 + 0.982 0.381 -2.615
ENSG00000117114 E044 8.0522655 0.0020992483 3.098766e-05 1.837645e-04 1 81802014 81802088 75 + 0.954 0.231 -3.510
ENSG00000117114 E045 3.9306867 0.0085488475 1.446437e-02 3.927801e-02 1 81802089 81802098 10 + 0.679 0.231 -2.426
ENSG00000117114 E046 17.4441909 0.0094517703 4.875767e-05 2.754845e-04 1 81802099 81802229 131 + 1.242 0.773 -1.740
ENSG00000117114 E047 0.1482932 0.0413957451 1.125801e-01   1 81802711 81802736 26 + 0.000 0.230 12.889
ENSG00000117114 E048 0.0000000       1 81811843 81811923 81 +      
ENSG00000117114 E049 52.8447910 0.0004786569 3.565061e-09 4.770041e-08 1 81836885 81837057 173 + 1.690 1.357 -1.141
ENSG00000117114 E050 79.3940063 0.0040269949 1.413051e-08 1.694770e-07 1 81907017 81907230 214 + 1.859 1.575 -0.961
ENSG00000117114 E051 0.9597906 0.1739394449 6.023632e-03 1.867446e-02 1 81920596 81920642 47 + 0.061 0.647 4.509
ENSG00000117114 E052 53.3033270 0.0148216414 1.453736e-06 1.166332e-05 1 81936728 81936837 110 + 1.700 1.317 -1.314
ENSG00000117114 E053 0.1472490 0.0428512778 1.000000e+00   1 81941193 81942033 841 + 0.061 0.000 -10.976
ENSG00000117114 E054 0.4460135 0.0269541324 5.819219e-01 7.063894e-01 1 81942034 81942045 12 + 0.162 0.000 -12.617
ENSG00000117114 E055 205.0891325 0.0001791789 5.685313e-20 3.595012e-18 1 81942969 81943769 801 + 2.260 2.038 -0.744
ENSG00000117114 E056 88.5519964 0.0003515124 2.829406e-06 2.129863e-05 1 81950189 81950386 198 + 1.887 1.735 -0.511
ENSG00000117114 E057 60.5248279 0.0048157253 2.083089e-03 7.481232e-03 1 81950387 81950482 96 + 1.720 1.591 -0.439
ENSG00000117114 E058 66.3761960 0.0028914775 2.394573e-04 1.131001e-03 1 81951018 81951121 104 + 1.763 1.613 -0.506
ENSG00000117114 E059 93.9718417 0.0002898632 5.428042e-05 3.031443e-04 1 81951957 81952142 186 + 1.907 1.798 -0.367
ENSG00000117114 E060 0.2924217 0.0290785164 1.000000e+00   1 81952143 81952857 715 + 0.115 0.000 -12.046
ENSG00000117114 E061 3.1143526 0.1419624890 6.041351e-01 7.247681e-01 1 81952987 81953025 39 + 0.569 0.488 -0.380
ENSG00000117114 E062 0.5964967 0.0201419062 8.269178e-01 8.911351e-01 1 81953026 81953445 420 + 0.162 0.231 0.631
ENSG00000117114 E063 0.1472490 0.0428512778 1.000000e+00   1 81955767 81955876 110 + 0.061 0.000 -10.976
ENSG00000117114 E064 102.1928956 0.0003732763 4.419783e-03 1.431846e-02 1 81955877 81956060 184 + 1.930 1.885 -0.151
ENSG00000117114 E065 1.2682218 0.0126209208 7.646158e-01 8.476357e-01 1 81963744 81965853 2110 + 0.280 0.381 0.632
ENSG00000117114 E066 0.9578041 0.0121989077 8.205347e-01 8.868139e-01 1 81965854 81966057 204 + 0.244 0.231 -0.103
ENSG00000117114 E067 74.3919991 0.0023089737 5.004850e-01 6.367294e-01 1 81966058 81966183 126 + 1.778 1.821 0.146
ENSG00000117114 E068 0.7500885 0.1000730417 1.000000e+00 1.000000e+00 1 81966184 81966403 220 + 0.205 0.230 0.206
ENSG00000117114 E069 98.6183953 0.0011134459 5.386432e-01 6.700527e-01 1 81966404 81966609 206 + 1.896 1.948 0.176
ENSG00000117114 E070 0.1472490 0.0428512778 1.000000e+00   1 81967264 81968025 762 + 0.061 0.000 -10.976
ENSG00000117114 E071 83.4101802 0.0003479224 6.375588e-01 7.514265e-01 1 81968026 81968199 174 + 1.820 1.878 0.195
ENSG00000117114 E072 87.3903626 0.0010328577 5.454772e-02 1.171976e-01 1 81969178 81969387 210 + 1.857 1.844 -0.044
ENSG00000117114 E073 92.0192316 0.0013714304 2.283992e-01 3.605074e-01 1 81970314 81970534 221 + 1.847 1.981 0.451
ENSG00000117114 E074 52.2998602 0.0004178970 4.311374e-01 5.737315e-01 1 81971852 81971918 67 + 1.606 1.730 0.419
ENSG00000117114 E075 38.1956155 0.0005511616 1.035127e-01 1.958510e-01 1 81979869 81979888 20 + 1.459 1.642 0.625
ENSG00000117114 E076 57.4717143 0.0024399345 1.985003e-02 5.117062e-02 1 81979889 81979960 72 + 1.621 1.831 0.713
ENSG00000117114 E077 0.0000000       1 81980795 81980839 45 +      
ENSG00000117114 E078 0.0000000       1 81980840 81981123 284 +      
ENSG00000117114 E079 0.0000000       1 81981124 81981150 27 +      
ENSG00000117114 E080 0.0000000       1 81981151 81981531 381 +      
ENSG00000117114 E081 0.0000000       1 81981532 81981807 276 +      
ENSG00000117114 E082 87.0949716 0.0004177429 5.138300e-01 6.486024e-01 1 81981808 81981976 169 + 1.826 1.934 0.366
ENSG00000117114 E083 1.1876829 0.0108169100 5.556498e-01 6.844890e-01 1 81981977 81984316 2340 + 0.313 0.231 -0.591
ENSG00000117114 E084 0.4375944 0.0269015646 5.821042e-01 7.065201e-01 1 81984317 81984582 266 + 0.162 0.000 -12.617
ENSG00000117114 E085 87.9645180 0.0019224928 3.093538e-01 4.516407e-01 1 81984583 81984711 129 + 1.827 1.955 0.431
ENSG00000117114 E086 67.9969313 0.0004235527 1.783920e-02 4.679308e-02 1 81985259 81985355 97 + 1.703 1.897 0.654
ENSG00000117114 E087 0.2966881 0.0290785164 1.000000e+00   1 81985356 81985410 55 + 0.115 0.000 -12.046
ENSG00000117114 E088 1.7058267 0.0775237530 5.745480e-02 1.222691e-01 1 81986901 81987029 129 + 0.244 0.657 2.226
ENSG00000117114 E089 1.0373134 0.0122059665 1.490517e-01 2.603868e-01 1 81987030 81987259 230 + 0.313 0.000 -13.848
ENSG00000117114 E090 6.1194965 0.0550653780 9.481341e-01 9.714345e-01 1 81987260 81987288 29 + 0.754 0.824 0.279
ENSG00000117114 E091 28.4392485 0.0007021722 4.588370e-01 5.991005e-01 1 81987289 81987341 53 + 1.376 1.396 0.067
ENSG00000117114 E092 0.4460135 0.0269541324 5.819219e-01 7.063894e-01 1 81987342 81987868 527 + 0.162 0.000 -12.617
ENSG00000117114 E093 0.4460135 0.0269541324 5.819219e-01 7.063894e-01 1 81987869 81987886 18 + 0.162 0.000 -12.617
ENSG00000117114 E094 3.1021477 0.0051148667 3.909932e-02 8.937318e-02 1 81987887 81988391 505 + 0.604 0.231 -2.105
ENSG00000117114 E095 1.1749974 0.0148305715 5.573565e-01 6.857859e-01 1 81988392 81988426 35 + 0.313 0.231 -0.591
ENSG00000117114 E096 4.4217767 0.0153634503 3.647243e-01 5.090577e-01 1 81988427 81989656 1230 + 0.679 0.580 -0.428
ENSG00000117114 E097 1.2608349 0.0105134368 5.566992e-01 6.852827e-01 1 81989657 81989695 39 + 0.313 0.231 -0.589
ENSG00000117114 E098 0.7427016 0.0155030840 2.784516e-01 4.181278e-01 1 81989696 81989709 14 + 0.244 0.000 -13.390
ENSG00000117114 E099 4.0133165 0.0111440181 1.212319e-02 3.383125e-02 1 81989710 81990390 681 + 0.692 0.231 -2.484
ENSG00000117114 E100 526.6165039 0.0079108404 1.256915e-18 6.846430e-17 1 81990391 81993932 3542 + 2.514 2.911 1.321