ENSG00000116641

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000340370 ENSG00000116641 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK7 protein_coding protein_coding 19.93789 12.99317 31.27128 1.527817 0.7760905 1.266437 2.593703 0.9300733 4.057982 0.1612195 0.2633245 2.1134679 0.11503750 0.07466667 0.13010000 0.05543333 0.147176924 0.001650743 FALSE TRUE
ENST00000454575 ENSG00000116641 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK7 protein_coding protein_coding 19.93789 12.99317 31.27128 1.527817 0.7760905 1.266437 1.250395 0.2488609 2.474399 0.1270791 0.1837874 3.2626483 0.05532917 0.02166667 0.07903333 0.05736667 0.192080431 0.001650743 FALSE TRUE
ENST00000635123 ENSG00000116641 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK7 protein_coding protein_coding 19.93789 12.99317 31.27128 1.527817 0.7760905 1.266437 6.324599 0.4259148 13.522747 0.2133501 0.2067725 4.9562648 0.24475417 0.03153333 0.43330000 0.40176667 0.005065819 0.001650743 FALSE TRUE
ENST00000636635 ENSG00000116641 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK7 protein_coding processed_transcript 19.93789 12.99317 31.27128 1.527817 0.7760905 1.266437 4.433403 7.2422025 5.398369 1.6245108 1.5820271 -0.4232256 0.28031667 0.54483333 0.17030000 -0.37453333 0.001650743 0.001650743   FALSE
ENST00000637255 ENSG00000116641 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK7 protein_coding protein_coding 19.93789 12.99317 31.27128 1.527817 0.7760905 1.266437 3.625627 3.4928158 3.909636 0.1816367 0.4692546 0.1622047 0.20977083 0.27473333 0.12590000 -0.14883333 0.003596880 0.001650743 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000116641 E001 0.0000000       1 62452272 62452299 28 -      
ENSG00000116641 E002 0.0000000       1 62453516 62453580 65 -      
ENSG00000116641 E003 0.1451727 0.0431000983 1.000000e+00   1 62453581 62454297 717 - 0.060 0.000 -10.571
ENSG00000116641 E004 0.0000000       1 62454298 62454725 428 -      
ENSG00000116641 E005 0.0000000       1 62454726 62454829 104 -      
ENSG00000116641 E006 0.0000000       1 62454830 62454897 68 -      
ENSG00000116641 E007 0.4438354 0.1407836606 8.083322e-02 1.608471e-01 1 62454898 62455009 112 - 0.060 0.380 3.233
ENSG00000116641 E008 0.5921286 0.3940182523 7.232905e-02 1.472186e-01 1 62455010 62455012 3 - 0.060 0.481 3.769
ENSG00000116641 E009 0.5921286 0.3940182523 7.232905e-02 1.472186e-01 1 62455013 62455032 20 - 0.060 0.481 3.769
ENSG00000116641 E010 136.0354981 0.0047083363 3.642942e-24 3.674890e-22 1 62455033 62455413 381 - 1.901 2.369 1.567
ENSG00000116641 E011 89.3261643 0.0015521166 6.100827e-20 3.840947e-18 1 62455414 62455454 41 - 1.743 2.151 1.372
ENSG00000116641 E012 57.5634387 0.0030650730 3.196148e-11 6.127263e-10 1 62455455 62455456 2 - 1.567 1.946 1.283
ENSG00000116641 E013 142.1381097 0.0023934158 7.475874e-25 8.093039e-23 1 62457538 62457705 168 - 1.944 2.352 1.367
ENSG00000116641 E014 1.1908008 0.1729301599 8.009300e-03 2.380100e-02 1 62457706 62459199 1494 - 0.114 0.657 3.567
ENSG00000116641 E015 0.0000000       1 62460934 62460970 37 -      
ENSG00000116641 E016 65.6161263 0.0014851090 1.246243e-11 2.554610e-10 1 62473982 62474009 28 - 1.634 1.983 1.180
ENSG00000116641 E017 86.2404896 0.0004114568 3.544735e-15 1.247056e-13 1 62474010 62474088 79 - 1.751 2.093 1.150
ENSG00000116641 E018 40.0892218 0.0005083750 1.197799e-04 6.129478e-04 1 62475208 62475211 4 - 1.456 1.706 0.853
ENSG00000116641 E019 119.6258653 0.0003707424 4.938114e-14 1.466548e-12 1 62475212 62475351 140 - 1.916 2.201 0.955
ENSG00000116641 E020 0.1482932 0.0417793916 8.688583e-02   1 62475352 62475706 355 - 0.000 0.233 14.735
ENSG00000116641 E021 176.3959839 0.0002788734 1.476812e-10 2.532841e-09 1 62475707 62475943 237 - 2.105 2.313 0.694
ENSG00000116641 E022 64.0424241 0.0007342146 1.264640e-03 4.858990e-03 1 62476067 62476070 4 - 1.677 1.854 0.599
ENSG00000116641 E023 104.7824403 0.0003521306 5.660148e-05 3.146230e-04 1 62476071 62476144 74 - 1.890 2.062 0.580
ENSG00000116641 E024 71.1785907 0.0003398542 1.611442e-06 1.279373e-05 1 62476145 62476156 12 - 1.706 1.943 0.801
ENSG00000116641 E025 0.9545949 0.0172926141 3.602116e-01 5.045352e-01 1 62476157 62476189 33 - 0.203 0.384 1.255
ENSG00000116641 E026 0.5901540 0.0209898823 6.998614e-01 7.994661e-01 1 62477007 62477043 37 - 0.160 0.233 0.668
ENSG00000116641 E027 0.2966881 0.0269582290 1.000000e+00   1 62477059 62477121 63 - 0.113 0.000 -11.505
ENSG00000116641 E028 100.0607963 0.0003127334 3.302217e-05 1.944231e-04 1 62477700 62477752 53 - 1.868 2.049 0.606
ENSG00000116641 E029 112.6562956 0.0003315792 1.144693e-03 4.453040e-03 1 62477753 62477825 73 - 1.930 2.068 0.464
ENSG00000116641 E030 63.1284645 0.0003850034 2.561783e-01 3.931485e-01 1 62477826 62477834 9 - 1.698 1.768 0.237
ENSG00000116641 E031 0.6664265 0.0165462274 1.414145e-01 2.499724e-01 1 62477835 62478700 866 - 0.113 0.384 2.255
ENSG00000116641 E032 0.0000000       1 62478701 62478741 41 -      
ENSG00000116641 E033 0.0000000       1 62478742 62479004 263 -      
ENSG00000116641 E034 0.3030308 0.3836655095 1.000000e+00   1 62481399 62481468 70 - 0.114 0.000 -11.513
ENSG00000116641 E035 0.3030308 0.3836655095 1.000000e+00   1 62481469 62481470 2 - 0.114 0.000 -11.513
ENSG00000116641 E036 0.3030308 0.3836655095 1.000000e+00   1 62481471 62481479 9 - 0.114 0.000 -11.513
ENSG00000116641 E037 0.2987644 0.0274106030 1.000000e+00   1 62481480 62481532 53 - 0.113 0.000 -11.505
ENSG00000116641 E038 1.0382438 0.0122715420 8.242734e-01 8.892883e-01 1 62481533 62482860 1328 - 0.277 0.233 -0.332
ENSG00000116641 E039 2.5312613 0.4698213584 7.299373e-01 8.220093e-01 1 62482861 62485527 2667 - 0.511 0.374 -0.720
ENSG00000116641 E040 0.1515154 0.0431049966 1.000000e+00   1 62485528 62485653 126 - 0.060 0.000 -10.506
ENSG00000116641 E041 2.5487528 0.0062160183 1.548386e-01 2.681988e-01 1 62485659 62487397 1739 - 0.529 0.233 -1.745
ENSG00000116641 E042 3.8882953 0.0126064975 2.117242e-03 7.587778e-03 1 62487398 62487412 15 - 0.468 0.946 2.015
ENSG00000116641 E043 0.1515154 0.0431049966 1.000000e+00   1 62487413 62487452 40 - 0.060 0.000 -10.506
ENSG00000116641 E044 2.6207590 0.0057598173 5.102264e-01 6.454642e-01 1 62487453 62488933 1481 - 0.510 0.384 -0.652
ENSG00000116641 E045 127.2945117 0.0002705231 1.132757e-03 4.413857e-03 1 62488934 62489065 132 - 1.985 2.115 0.438
ENSG00000116641 E046 0.1472490 0.0438435586 1.000000e+00   1 62492306 62492703 398 - 0.060 0.000 -10.505
ENSG00000116641 E047 88.5699938 0.0003368657 3.513773e-04 1.585655e-03 1 62492704 62492847 144 - 1.820 1.987 0.559
ENSG00000116641 E048 120.8205755 0.0002897663 8.482015e-03 2.499109e-02 1 62494275 62494467 193 - 1.967 2.078 0.371
ENSG00000116641 E049 4.4126627 0.0743976338 7.282506e-01 8.207551e-01 1 62494468 62495298 831 - 0.646 0.720 0.311
ENSG00000116641 E050 87.5205116 0.0017706051 3.684568e-02 8.517759e-02 1 62495581 62495681 101 - 1.829 1.940 0.373
ENSG00000116641 E051 0.1515154 0.0431049966 1.000000e+00   1 62495847 62495904 58 - 0.060 0.000 -10.506
ENSG00000116641 E052 107.8475178 0.0013537837 1.415265e-02 3.857188e-02 1 62496339 62496497 159 - 1.916 2.032 0.389
ENSG00000116641 E053 109.0395105 0.0002628691 3.653309e-01 5.096565e-01 1 62504630 62504782 153 - 1.937 1.983 0.156
ENSG00000116641 E054 89.9271560 0.0002857380 6.716064e-02 1.386327e-01 1 62505682 62505790 109 - 1.845 1.936 0.306
ENSG00000116641 E055 53.2999004 0.0005020400 1.243281e-01 2.261659e-01 1 62505791 62505816 26 - 1.620 1.718 0.332
ENSG00000116641 E056 103.3292147 0.0033353041 2.527683e-01 3.891860e-01 1 62507962 62508058 97 - 1.935 1.883 -0.177
ENSG00000116641 E057 111.5792050 0.0010560659 2.390049e-01 3.729655e-01 1 62510577 62510673 97 - 1.967 1.921 -0.152
ENSG00000116641 E058 0.8751888 0.1488895655 3.317768e-01 4.754112e-01 1 62510674 62511365 692 - 0.277 0.000 -13.086
ENSG00000116641 E059 10.8424592 0.0015948179 1.283464e-01 2.318482e-01 1 62513444 62513470 27 - 1.023 0.825 -0.746
ENSG00000116641 E060 112.2283326 0.0003684085 8.418483e-01 9.013887e-01 1 62513471 62513606 136 - 1.957 1.974 0.057
ENSG00000116641 E061 127.7732744 0.0003424092 5.886791e-02 1.246936e-01 1 62513716 62513898 183 - 2.027 1.957 -0.233
ENSG00000116641 E062 0.0000000       1 62516801 62516841 41 -      
ENSG00000116641 E063 123.2355464 0.0017196953 1.072194e-03 4.208466e-03 1 62528151 62528305 155 - 2.023 1.876 -0.495
ENSG00000116641 E064 134.1322475 0.0008095674 2.880268e-03 9.911867e-03 1 62529277 62529446 170 - 2.055 1.937 -0.399
ENSG00000116641 E065 120.6597269 0.0002427264 6.456680e-07 5.585382e-06 1 62535493 62535632 140 - 2.025 1.808 -0.731
ENSG00000116641 E066 111.5953295 0.0002753887 2.413220e-06 1.844200e-05 1 62537891 62538061 171 - 1.992 1.778 -0.719
ENSG00000116641 E067 83.6434410 0.0002974684 1.111676e-04 5.731183e-04 1 62539545 62539658 114 - 1.867 1.667 -0.673
ENSG00000116641 E068 70.1206410 0.0003569944 2.688018e-02 6.574532e-02 1 62539752 62539843 92 - 1.777 1.661 -0.394
ENSG00000116641 E069 50.8120729 0.0004429390 2.179811e-01 3.479862e-01 1 62539844 62539892 49 - 1.634 1.563 -0.241
ENSG00000116641 E070 44.7498488 0.0004627146 2.957466e-02 7.112357e-02 1 62542608 62542636 29 - 1.593 1.447 -0.498
ENSG00000116641 E071 52.9786612 0.0033219632 2.127817e-03 7.620920e-03 1 62542637 62542703 67 - 1.674 1.459 -0.735
ENSG00000116641 E072 0.0000000       1 62543286 62543321 36 -      
ENSG00000116641 E073 0.0000000       1 62543639 62543655 17 -      
ENSG00000116641 E074 65.4012714 0.0004417176 1.236665e-02 3.441383e-02 1 62543656 62543745 90 - 1.750 1.611 -0.473
ENSG00000116641 E075 11.1212480 0.0015791456 6.018610e-01 7.229269e-01 1 62544947 62545039 93 - 1.004 0.946 -0.216
ENSG00000116641 E076 99.1290925 0.0003157121 7.850119e-04 3.205893e-03 1 62552732 62552901 170 - 1.933 1.778 -0.520
ENSG00000116641 E077 0.0000000       1 62555291 62555328 38 -      
ENSG00000116641 E078 101.5586111 0.0006226081 3.109918e-08 3.487420e-07 1 62555825 62555989 165 - 1.960 1.681 -0.942
ENSG00000116641 E079 47.3304647 0.0004555167 1.489182e-08 1.777925e-07 1 62558989 62558997 9 - 1.651 1.202 -1.553
ENSG00000116641 E080 109.1329557 0.0002724217 2.969646e-15 1.057501e-13 1 62558998 62559220 223 - 2.004 1.595 -1.381
ENSG00000116641 E081 61.7162740 0.0016054476 2.943210e-07 2.728699e-06 1 62561617 62561703 87 - 1.754 1.401 -1.204
ENSG00000116641 E082 71.2413595 0.0003492053 2.574451e-09 3.536781e-08 1 62577262 62577363 102 - 1.818 1.447 -1.262
ENSG00000116641 E083 73.1475660 0.0003362424 4.982409e-08 5.373462e-07 1 62578828 62578966 139 - 1.825 1.499 -1.107
ENSG00000116641 E084 51.6915527 0.0017819793 1.441598e-04 7.216257e-04 1 62583184 62583254 71 - 1.670 1.401 -0.920
ENSG00000116641 E085 3.4258130 0.0045735899 2.677841e-01 4.061263e-01 1 62584105 62584402 298 - 0.529 0.721 0.839
ENSG00000116641 E086 11.5184921 0.0029967989 3.095508e-02 7.382852e-02 1 62584403 62584878 476 - 0.956 1.202 0.890
ENSG00000116641 E087 75.3369496 0.0003545345 6.236805e-05 3.430931e-04 1 62586507 62586624 118 - 1.824 1.603 -0.749
ENSG00000116641 E088 0.0000000       1 62597523 62597541 19 -      
ENSG00000116641 E089 86.2176751 0.0006422257 2.691078e-06 2.035847e-05 1 62618706 62618868 163 - 1.885 1.633 -0.851
ENSG00000116641 E090 70.1553135 0.0003827700 1.993353e-07 1.910257e-06 1 62619900 62619989 90 - 1.805 1.489 -1.074
ENSG00000116641 E091 35.6121708 0.0005662936 1.378949e-04 6.943381e-04 1 62619990 62619993 4 - 1.521 1.202 -1.108
ENSG00000116641 E092 1.1739638 0.0114205430 1.238404e-01 2.254366e-01 1 62625098 62625258 161 - 0.203 0.496 1.841
ENSG00000116641 E093 94.0518303 0.0002885268 7.827560e-06 5.328642e-05 1 62625259 62625401 143 - 1.920 1.699 -0.746
ENSG00000116641 E094 0.2944980 0.4169215236 1.000000e+00   1 62627559 62629673 2115 - 0.113 0.000 -11.504
ENSG00000116641 E095 94.9243692 0.0025082392 7.381750e-08 7.691400e-07 1 62631240 62631405 166 - 1.935 1.626 -1.046
ENSG00000116641 E096 62.7122122 0.0009209249 1.436618e-10 2.469270e-09 1 62633498 62633578 81 - 1.773 1.320 -1.549
ENSG00000116641 E097 0.0000000       1 62633900 62633935 36 -      
ENSG00000116641 E098 0.0000000       1 62634377 62634772 396 -      
ENSG00000116641 E099 72.8723568 0.0032225294 2.458948e-06 1.876043e-05 1 62634773 62634922 150 - 1.823 1.518 -1.037
ENSG00000116641 E100 0.3268771 0.0293948104 2.618291e-01   1 62634923 62635691 769 - 0.060 0.233 2.255
ENSG00000116641 E101 48.5170148 0.0004729647 4.827062e-08 5.222572e-07 1 62636537 62636603 67 - 1.660 1.239 -1.451
ENSG00000116641 E102 0.1515154 0.0431049966 1.000000e+00   1 62638311 62638379 69 - 0.060 0.000 -10.506
ENSG00000116641 E103 70.7373361 0.0004046354 1.367025e-09 1.975430e-08 1 62647691 62647776 86 - 1.817 1.436 -1.298
ENSG00000116641 E104 117.4667886 0.0002657653 5.113023e-12 1.117301e-10 1 62648106 62648318 213 - 2.028 1.699 -1.107
ENSG00000116641 E105 74.2558296 0.0080988205 5.041978e-06 3.585539e-05 1 62648415 62648544 130 - 1.832 1.491 -1.158
ENSG00000116641 E106 69.8949274 0.0068827142 3.631326e-07 3.302500e-06 1 62653725 62653793 69 - 1.811 1.426 -1.315
ENSG00000116641 E107 99.4064670 0.0159072608 2.731386e-08 3.099634e-07 1 62653984 62654159 176 - 1.970 1.501 -1.588
ENSG00000116641 E108 56.7173982 0.0004172110 3.629265e-12 8.118471e-11 1 62663025 62663130 106 - 1.734 1.202 -1.833
ENSG00000116641 E109 28.4509939 0.0133635129 2.252119e-29 3.573343e-27 1 62687591 62687656 66 - 0.942 1.918 3.401
ENSG00000116641 E110 51.7552174 0.0039429815 2.924727e-03 1.004388e-02 1 62688227 62688386 160 - 1.578 1.774 0.667