ENSG00000115464

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000398571 ENSG00000115464 HEK293_OSMI2_2hA HEK293_TMG_2hB USP34 protein_coding protein_coding 14.31312 9.40079 17.18484 0.3873062 0.8872831 0.8695882 4.735673 0.7765309 7.725350 0.15907398 0.07959742 3.2978911 0.2840375 0.08430000 0.45233333 0.36803333 5.045230e-10 5.04523e-10 FALSE TRUE
ENST00000411912 ENSG00000115464 HEK293_OSMI2_2hA HEK293_TMG_2hB USP34 protein_coding protein_coding 14.31312 9.40079 17.18484 0.3873062 0.8872831 0.8695882 1.404076 1.1660958 1.638443 0.06048153 0.56081906 0.4870981 0.1065000 0.12490000 0.09856667 -0.02633333 7.464541e-01 5.04523e-10 FALSE TRUE
ENST00000436269 ENSG00000115464 HEK293_OSMI2_2hA HEK293_TMG_2hB USP34 protein_coding protein_coding 14.31312 9.40079 17.18484 0.3873062 0.8872831 0.8695882 4.584177 5.5286833 2.882126 0.62803380 0.77445491 -0.9374128 0.3640042 0.58510000 0.16450000 -0.42060000 1.462669e-06 5.04523e-10 FALSE TRUE
MSTRG.18490.9 ENSG00000115464 HEK293_OSMI2_2hA HEK293_TMG_2hB USP34 protein_coding   14.31312 9.40079 17.18484 0.3873062 0.8872831 0.8695882 1.759887 0.9218844 2.043731 0.03467900 0.59931954 1.1400242 0.1189542 0.09873333 0.11716667 0.01843333 8.949453e-01 5.04523e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000115464 E001 10.2794300 0.0017021268 5.389854e-08 5.769206e-07 2 61187463 61187549 87 - 0.762 1.360 2.198
ENSG00000115464 E002 260.5658753 0.0166147165 1.912419e-18 1.017988e-16 2 61187550 61188385 836 - 2.117 2.718 2.007
ENSG00000115464 E003 75.8696580 0.0067157554 2.664457e-11 5.175570e-10 2 61188386 61188473 88 - 1.675 2.097 1.420
ENSG00000115464 E004 100.2932786 0.0024543356 3.847960e-14 1.160434e-12 2 61188474 61188644 171 - 1.814 2.183 1.237
ENSG00000115464 E005 64.4461925 0.0003610141 5.872553e-10 9.096047e-09 2 61188645 61188709 65 - 1.639 1.970 1.119
ENSG00000115464 E006 3.0655248 0.0051598861 6.572073e-01 7.666183e-01 2 61188710 61188741 32 - 0.530 0.636 0.475
ENSG00000115464 E007 97.5514990 0.0004664928 2.984072e-14 9.152071e-13 2 61188910 61189069 160 - 1.814 2.150 1.127
ENSG00000115464 E008 1.5594976 0.0092510673 4.994972e-01 6.358186e-01 2 61189277 61189453 177 - 0.325 0.476 0.838
ENSG00000115464 E009 2.0712762 0.0517847738 6.569383e-01 7.663863e-01 2 61189454 61189697 244 - 0.440 0.369 -0.388
ENSG00000115464 E010 6.3362389 0.0030111155 5.506063e-01 6.802134e-01 2 61189698 61190270 573 - 0.807 0.752 -0.219
ENSG00000115464 E011 84.8942876 0.0088567880 8.531603e-04 3.448814e-03 2 61190271 61190414 144 - 1.790 2.034 0.821
ENSG00000115464 E012 59.8946014 0.0009911440 1.071425e-03 4.205757e-03 2 61190518 61190626 109 - 1.653 1.862 0.707
ENSG00000115464 E013 38.8460662 0.0005695099 1.772495e-02 4.654170e-02 2 61190627 61190658 32 - 1.470 1.659 0.644
ENSG00000115464 E014 1.0769655 0.0120784636 6.319173e-01 7.468640e-01 2 61190659 61191349 691 - 0.254 0.367 0.738
ENSG00000115464 E015 54.5328916 0.0004163506 1.708739e-04 8.388801e-04 2 61192901 61192980 80 - 1.601 1.838 0.803
ENSG00000115464 E016 0.7363589 0.0155239492 2.735221e-01 4.125748e-01 2 61192981 61193365 385 - 0.254 0.000 -12.267
ENSG00000115464 E017 44.7396201 0.0018903619 2.590107e-04 1.212683e-03 2 61203140 61203206 67 - 1.506 1.765 0.882
ENSG00000115464 E018 42.3925702 0.0086278345 3.587580e-03 1.197548e-02 2 61203207 61203263 57 - 1.487 1.737 0.852
ENSG00000115464 E019 61.5053314 0.0003889557 2.504762e-03 8.777647e-03 2 61204256 61204380 125 - 1.667 1.858 0.648
ENSG00000115464 E020 41.0306776 0.0069014632 1.102589e-01 2.059291e-01 2 61204497 61204526 30 - 1.506 1.659 0.524
ENSG00000115464 E021 51.6585158 0.0019610371 3.165141e-02 7.517131e-02 2 61204527 61204601 75 - 1.601 1.765 0.558
ENSG00000115464 E022 58.7955623 0.0004894455 1.022670e-03 4.036960e-03 2 61206017 61206124 108 - 1.642 1.850 0.704
ENSG00000115464 E023 38.1691872 0.0027053824 3.219993e-04 1.468861e-03 2 61206760 61206787 28 - 1.438 1.712 0.935
ENSG00000115464 E024 51.6168594 0.0004619376 3.545110e-03 1.185439e-02 2 61206788 61206886 99 - 1.590 1.789 0.674
ENSG00000115464 E025 0.5975289 0.0244798575 3.894230e-01 5.335191e-01 2 61206887 61208898 2012 - 0.214 0.000 -11.946
ENSG00000115464 E026 39.7590157 0.0006093149 1.206057e-01 2.208277e-01 2 61208899 61208977 79 - 1.502 1.639 0.468
ENSG00000115464 E027 59.4705844 0.0004263893 6.771942e-02 1.395696e-01 2 61211772 61211929 158 - 1.673 1.807 0.455
ENSG00000115464 E028 66.1394972 0.0003495025 9.886173e-01 9.969424e-01 2 61214060 61214218 159 - 1.740 1.779 0.131
ENSG00000115464 E029 45.5578347 0.0004689983 9.512443e-01 9.735103e-01 2 61214219 61214278 60 - 1.583 1.619 0.121
ENSG00000115464 E030 97.5850387 0.0040281048 1.944355e-01 3.193232e-01 2 61214279 61214599 321 - 1.889 1.995 0.354
ENSG00000115464 E031 33.8289253 0.0103645561 6.341889e-01 7.487407e-01 2 61214600 61214626 27 - 1.449 1.525 0.264
ENSG00000115464 E032 27.5569575 0.0139599432 9.803837e-01 9.917383e-01 2 61214627 61214627 1 - 1.371 1.409 0.133
ENSG00000115464 E033 44.8549348 0.0067604956 6.919458e-01 7.932939e-01 2 61214628 61214694 67 - 1.567 1.633 0.227
ENSG00000115464 E034 1.3275570 0.0370325611 9.256945e-01 9.572340e-01 2 61220193 61220309 117 - 0.325 0.366 0.248
ENSG00000115464 E035 53.1970642 0.0058650597 6.609469e-01 7.695415e-01 2 61220310 61220404 95 - 1.639 1.707 0.230
ENSG00000115464 E036 35.6028475 0.0005833086 3.346207e-01 4.783670e-01 2 61220405 61220457 53 - 1.463 1.567 0.356
ENSG00000115464 E037 39.9368321 0.0005201181 1.194192e-01 2.191149e-01 2 61221502 61221558 57 - 1.502 1.639 0.468
ENSG00000115464 E038 34.4922327 0.0006144755 3.523980e-01 4.966621e-01 2 61221559 61221606 48 - 1.448 1.551 0.352
ENSG00000115464 E039 0.1515154 0.0430575810 1.000000e+00   2 61221607 61221845 239 - 0.064 0.000 -9.946
ENSG00000115464 E040 26.2214612 0.0068650420 9.141769e-01 9.496366e-01 2 61222619 61222631 13 - 1.349 1.396 0.163
ENSG00000115464 E041 29.1399404 0.0036127791 6.954771e-01 7.960658e-01 2 61222632 61222663 32 - 1.402 1.408 0.022
ENSG00000115464 E042 0.2966881 0.0272029818 1.000000e+00   2 61222664 61222975 312 - 0.120 0.000 -10.945
ENSG00000115464 E043 44.6387055 0.0005975288 1.810861e-01 3.025746e-01 2 61223060 61223164 105 - 1.590 1.543 -0.161
ENSG00000115464 E044 1.1029768 0.0116795378 6.658360e-01 7.734352e-01 2 61223165 61223247 83 - 0.291 0.221 -0.523
ENSG00000115464 E045 36.5757112 0.0033989620 4.046200e-02 9.187064e-02 2 61223248 61223296 49 - 1.519 1.398 -0.416
ENSG00000115464 E046 1.6294300 0.0088837222 2.986225e-01 4.400797e-01 2 61223297 61223661 365 - 0.414 0.221 -1.262
ENSG00000115464 E047 4.0064246 0.0111766857 9.648577e-04 3.838098e-03 2 61226788 61227066 279 - 0.464 0.984 2.174
ENSG00000115464 E048 63.6667724 0.0057418038 8.306359e-01 8.937590e-01 2 61227067 61227218 152 - 1.719 1.771 0.175
ENSG00000115464 E049 52.0070601 0.0025528775 7.244252e-01 8.179456e-01 2 61228645 61228719 75 - 1.634 1.695 0.206
ENSG00000115464 E050 73.7449751 0.0003600371 9.521770e-01 9.740544e-01 2 61228827 61228995 169 - 1.788 1.825 0.124
ENSG00000115464 E051 43.4327554 0.0012433832 2.820042e-01 4.219672e-01 2 61229548 61229633 86 - 1.545 1.652 0.364
ENSG00000115464 E052 47.4710746 0.0009514777 3.960825e-01 5.398656e-01 2 61232452 61232532 81 - 1.587 1.677 0.308
ENSG00000115464 E053 37.4229257 0.0005500354 2.785928e-01 4.182644e-01 2 61235845 61235910 66 - 1.517 1.481 -0.124
ENSG00000115464 E054 36.8677125 0.0005695765 7.286718e-01 8.210739e-01 2 61236026 61236073 48 - 1.488 1.551 0.214
ENSG00000115464 E055 0.7490443 0.0710865714 2.914336e-01 4.323004e-01 2 61236074 61236160 87 - 0.255 0.000 -12.269
ENSG00000115464 E056 45.5157028 0.0087711085 9.670380e-01 9.833310e-01 2 61236161 61236236 76 - 1.579 1.626 0.160
ENSG00000115464 E057 0.1472490 0.0432361702 1.000000e+00   2 61236237 61236324 88 - 0.064 0.000 -9.945
ENSG00000115464 E058 37.7376500 0.0006706423 5.007433e-02 1.092945e-01 2 61236325 61236389 65 - 1.531 1.430 -0.347
ENSG00000115464 E059 49.4856133 0.0004587786 2.322586e-03 8.220726e-03 2 61241560 61241655 96 - 1.656 1.499 -0.535
ENSG00000115464 E060 38.9631538 0.0006086096 1.929375e-03 7.006618e-03 2 61241766 61241819 54 - 1.561 1.373 -0.646
ENSG00000115464 E061 38.4020272 0.0005670233 2.254763e-02 5.682031e-02 2 61245210 61245288 79 - 1.543 1.419 -0.426
ENSG00000115464 E062 53.4141970 0.0006916112 3.152809e-03 1.071584e-02 2 61246324 61246477 154 - 1.687 1.543 -0.491
ENSG00000115464 E063 63.8393392 0.0023824848 1.454827e-04 7.276903e-04 2 61248511 61248683 173 - 1.772 1.575 -0.670
ENSG00000115464 E064 43.4458458 0.0039652166 7.885657e-02 1.576857e-01 2 61256384 61256478 95 - 1.589 1.500 -0.304
ENSG00000115464 E065 36.4779865 0.0062913308 1.576385e-01 2.719757e-01 2 61256873 61256950 78 - 1.515 1.440 -0.255
ENSG00000115464 E066 32.1034123 0.0066047322 1.700084e-03 6.283794e-03 2 61257052 61257108 57 - 1.491 1.245 -0.855
ENSG00000115464 E067 45.9201342 0.0146104748 1.626741e-03 6.046324e-03 2 61257204 61257350 147 - 1.641 1.395 -0.844
ENSG00000115464 E068 30.2379923 0.0008583344 6.728373e-02 1.388348e-01 2 61259711 61259776 66 - 1.441 1.335 -0.369
ENSG00000115464 E069 0.1515154 0.0430575810 1.000000e+00   2 61265266 61265396 131 - 0.064 0.000 -9.946
ENSG00000115464 E070 48.6910033 0.0008413709 7.460154e-01 8.338888e-01 2 61265397 61265557 161 - 1.613 1.632 0.067
ENSG00000115464 E071 0.0000000       2 61265558 61265560 3 -      
ENSG00000115464 E072 0.2987644 0.0271054558 1.000000e+00   2 61265585 61265983 399 - 0.120 0.000 -10.946
ENSG00000115464 E073 46.2481768 0.0035666819 2.986492e-01 4.401052e-01 2 61265984 61266167 184 - 1.601 1.568 -0.112
ENSG00000115464 E074 0.9672673 0.0149149608 4.806507e-01 6.188937e-01 2 61277702 61278164 463 - 0.214 0.367 1.061
ENSG00000115464 E075 35.3518355 0.0253683620 4.376168e-01 5.795273e-01 2 61278165 61278285 121 - 1.489 1.456 -0.111
ENSG00000115464 E076 29.5677357 0.0052296119 3.401311e-01 4.840833e-01 2 61278388 61278443 56 - 1.415 1.374 -0.144
ENSG00000115464 E077 38.0316450 0.0015648469 1.246893e-02 3.466281e-02 2 61280244 61280348 105 - 1.543 1.397 -0.503
ENSG00000115464 E078 35.1837849 0.0243908781 7.272946e-02 1.478890e-01 2 61281090 61281242 153 - 1.510 1.354 -0.537
ENSG00000115464 E079 27.7002338 0.0821263359 2.929469e-01 4.339775e-01 2 61283145 61283269 125 - 1.401 1.294 -0.371
ENSG00000115464 E080 19.2719102 0.0227060330 2.182680e-02 5.531655e-02 2 61283409 61283449 41 - 1.275 1.016 -0.927
ENSG00000115464 E081 19.9135626 0.0342333862 4.004899e-03 1.315567e-02 2 61284875 61284957 83 - 1.304 0.924 -1.370
ENSG00000115464 E082 39.2657357 0.0009111445 2.392582e-06 1.830053e-05 2 61288677 61288877 201 - 1.581 1.246 -1.159
ENSG00000115464 E083 24.9240549 0.0389639747 2.308427e-02 5.792224e-02 2 61293464 61293550 87 - 1.385 1.134 -0.884
ENSG00000115464 E084 25.1247899 0.0010299804 4.998854e-06 3.558211e-05 2 61294949 61295032 84 - 1.407 0.984 -1.505
ENSG00000115464 E085 36.8017991 0.0005403498 3.194537e-05 1.888226e-04 2 61295168 61295290 123 - 1.551 1.262 -1.000
ENSG00000115464 E086 36.6339236 0.0005377613 9.000195e-05 4.750000e-04 2 61296800 61296925 126 - 1.545 1.278 -0.926
ENSG00000115464 E087 41.6976196 0.0005822857 1.321756e-03 5.049459e-03 2 61300951 61301160 210 - 1.587 1.397 -0.651
ENSG00000115464 E088 27.6139513 0.0009253800 3.789065e-05 2.196802e-04 2 61301354 61301454 101 - 1.436 1.090 -1.218
ENSG00000115464 E089 38.9480496 0.0006166237 5.793903e-04 2.457764e-03 2 61311540 61311687 148 - 1.565 1.348 -0.746
ENSG00000115464 E090 34.4151245 0.0038872481 2.685080e-02 6.568194e-02 2 61311784 61311910 127 - 1.502 1.361 -0.487
ENSG00000115464 E091 36.6655048 0.0005745683 7.753760e-03 2.316042e-02 2 61314585 61314744 160 - 1.531 1.373 -0.545
ENSG00000115464 E092 29.7718629 0.0007182350 2.595667e-05 1.568003e-04 2 61314875 61314974 100 - 1.470 1.134 -1.175
ENSG00000115464 E093 32.8062563 0.0007181156 4.320636e-06 3.118334e-05 2 61317654 61317767 114 - 1.512 1.155 -1.247
ENSG00000115464 E094 38.8707486 0.0123094309 5.121612e-05 2.878724e-04 2 61319173 61319327 155 - 1.584 1.229 -1.232
ENSG00000115464 E095 28.2149551 0.0078604703 1.655165e-05 1.045987e-04 2 61325375 61325457 83 - 1.456 1.040 -1.466
ENSG00000115464 E096 37.2089468 0.0074799654 4.031683e-06 2.929767e-05 2 61331276 61331371 96 - 1.569 1.175 -1.369
ENSG00000115464 E097 33.0851378 0.0014051933 1.786476e-04 8.720949e-04 2 61333882 61333971 90 - 1.504 1.229 -0.954
ENSG00000115464 E098 41.2644993 0.0005578892 1.113331e-04 5.738620e-04 2 61339351 61339478 128 - 1.592 1.348 -0.840
ENSG00000115464 E099 19.1590920 0.0011025339 6.151419e-02 1.291810e-01 2 61339566 61339574 9 - 1.260 1.113 -0.524
ENSG00000115464 E100 32.7402662 0.0006274239 1.237955e-05 8.050215e-05 2 61339575 61339681 107 - 1.508 1.175 -1.162
ENSG00000115464 E101 37.7881978 0.0005234141 5.538252e-06 3.903148e-05 2 61343815 61344029 215 - 1.566 1.246 -1.109
ENSG00000115464 E102 0.0000000       2 61346257 61346347 91 -      
ENSG00000115464 E103 18.4138851 0.0011494170 8.013884e-03 2.381313e-02 2 61347870 61347910 41 - 1.256 1.013 -0.873
ENSG00000115464 E104 61.1314744 0.0004511286 9.296871e-16 3.523938e-14 2 61347911 61348271 361 - 1.789 1.262 -1.808
ENSG00000115464 E105 28.8604917 0.0030549427 1.272188e-10 2.207071e-09 2 61348272 61348330 59 - 1.484 0.801 -2.471
ENSG00000115464 E106 37.9325324 0.0005261488 7.095886e-10 1.083497e-08 2 61348331 61348480 150 - 1.585 1.090 -1.728
ENSG00000115464 E107 30.4236093 0.0007173531 5.844521e-08 6.206777e-07 2 61348756 61348886 131 - 1.491 1.013 -1.686
ENSG00000115464 E108 19.6978028 0.0009385422 4.090713e-04 1.809332e-03 2 61349250 61349285 36 - 1.297 0.953 -1.237
ENSG00000115464 E109 29.8989032 0.0006302234 1.163707e-06 9.529729e-06 2 61350260 61350389 130 - 1.477 1.066 -1.447
ENSG00000115464 E110 29.6177455 0.0006811786 1.290562e-07 1.283159e-06 2 61350568 61350693 126 - 1.479 1.013 -1.647
ENSG00000115464 E111 28.3593646 0.0006875589 1.506019e-06 1.203894e-05 2 61370321 61370413 93 - 1.458 1.040 -1.475
ENSG00000115464 E112 22.7160545 0.0008314931 1.457641e-06 1.169168e-05 2 61370498 61370579 82 - 1.370 0.884 -1.757
ENSG00000115464 E113 22.1448389 0.0015504724 1.105662e-04 5.704988e-04 2 61378363 61378424 62 - 1.349 0.984 -1.305
ENSG00000115464 E114 30.0561200 0.0007070541 2.269385e-05 1.388926e-04 2 61380169 61380361 193 - 1.472 1.134 -1.183
ENSG00000115464 E115 13.6228888 0.0724340805 2.571406e-02 6.334622e-02 2 61383269 61383336 68 - 1.148 0.804 -1.283
ENSG00000115464 E116 29.0085373 0.0006776372 7.229982e-06 4.961057e-05 2 61394853 61395002 150 - 1.463 1.090 -1.311
ENSG00000115464 E117 21.2503199 0.0055885164 4.768248e-04 2.071383e-03 2 61395183 61395233 51 - 1.330 0.984 -1.240
ENSG00000115464 E118 52.8169586 0.0596500862 4.486510e-04 1.961859e-03 2 61405708 61406128 421 - 1.721 1.292 -1.474
ENSG00000115464 E119 14.6400029 0.0036818374 3.236407e-04 1.475425e-03 2 61420746 61420833 88 - 1.186 0.753 -1.622
ENSG00000115464 E120 8.6547262 0.0102432894 2.097184e-04 1.005378e-03 2 61470650 61471192 543 - 0.996 0.367 -2.744