ENSG00000115414

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000354785 ENSG00000115414 HEK293_OSMI2_2hA HEK293_TMG_2hB FN1 protein_coding protein_coding 8.462945 11.62538 8.141397 0.6214897 0.6989478 -0.5133988 1.4097826 0.3632513 2.2231944 0.3632513 0.04862109 2.5808897 0.19281667 0.03353333 0.27596667 0.24243333 4.656431e-02 9.893436e-21 FALSE TRUE
ENST00000443816 ENSG00000115414 HEK293_OSMI2_2hA HEK293_TMG_2hB FN1 protein_coding protein_coding 8.462945 11.62538 8.141397 0.6214897 0.6989478 -0.5133988 0.3513854 0.0000000 0.7767844 0.0000000 0.04230676 6.2978964 0.04915417 0.00000000 0.09606667 0.09606667 4.403605e-17 9.893436e-21 FALSE TRUE
ENST00000446046 ENSG00000115414 HEK293_OSMI2_2hA HEK293_TMG_2hB FN1 protein_coding protein_coding 8.462945 11.62538 8.141397 0.6214897 0.6989478 -0.5133988 2.3894982 2.7077310 3.1665865 0.2406520 0.19526791 0.2250747 0.28691250 0.23443333 0.39770000 0.16326667 8.854613e-02 9.893436e-21 FALSE TRUE
ENST00000456923 ENSG00000115414 HEK293_OSMI2_2hA HEK293_TMG_2hB FN1 protein_coding protein_coding 8.462945 11.62538 8.141397 0.6214897 0.6989478 -0.5133988 2.2303439 4.1433405 0.8387592 0.2851624 0.11081655 -2.2908450 0.24269167 0.35643333 0.10226667 -0.25416667 3.649329e-14 9.893436e-21 FALSE TRUE
ENST00000461974 ENSG00000115414 HEK293_OSMI2_2hA HEK293_TMG_2hB FN1 protein_coding retained_intron 8.462945 11.62538 8.141397 0.6214897 0.6989478 -0.5133988 0.5448772 0.4063051 0.5684573 0.4063051 0.56845725 0.4745690 0.06126667 0.03163333 0.05983333 0.02820000 9.950217e-01 9.893436e-21   FALSE
ENST00000494446 ENSG00000115414 HEK293_OSMI2_2hA HEK293_TMG_2hB FN1 protein_coding retained_intron 8.462945 11.62538 8.141397 0.6214897 0.6989478 -0.5133988 0.6828144 2.8119083 0.0000000 0.3775687 0.00000000 -8.1405273 0.06288333 0.24163333 0.00000000 -0.24163333 9.893436e-21 9.893436e-21 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000115414 E001 0.1817044 0.0396240622 5.013725e-01   2 215360440 215360453 14 - 0.000 0.121 11.442
ENSG00000115414 E002 0.1817044 0.0396240622 5.013725e-01   2 215360454 215360457 4 - 0.000 0.121 11.468
ENSG00000115414 E003 2.1399954 0.0086148502 5.784278e-02 1.229346e-01 2 215360458 215360861 404 - 0.299 0.624 1.694
ENSG00000115414 E004 1.6219638 0.0083938587 2.261826e-01 3.578291e-01 2 215360862 215360864 3 - 0.299 0.511 1.180
ENSG00000115414 E005 1.4736707 0.0092593455 3.451280e-01 4.892068e-01 2 215360865 215360865 1 - 0.299 0.466 0.958
ENSG00000115414 E006 83.5302222 0.0111912611 4.595274e-12 1.010517e-10 2 215360866 215361146 281 - 1.609 2.078 1.584
ENSG00000115414 E007 127.8136487 0.0203014766 1.642052e-08 1.944991e-07 2 215361147 215361340 194 - 1.817 2.251 1.456
ENSG00000115414 E008 163.7719673 0.0038269815 1.082057e-16 4.631550e-15 2 215361341 215361626 286 - 1.990 2.336 1.157
ENSG00000115414 E009 93.0136792 0.0008534369 7.452322e-18 3.714339e-16 2 215361969 215362079 111 - 1.744 2.095 1.181
ENSG00000115414 E010 0.2998086 0.0299029816 9.795639e-01   2 215362080 215363640 1561 - 0.124 0.121 -0.043
ENSG00000115414 E011 0.0000000       2 215364370 215364666 297 -      
ENSG00000115414 E012 0.0000000       2 215364667 215364878 212 -      
ENSG00000115414 E013 96.3852575 0.0023115418 2.839352e-11 5.491646e-10 2 215364879 215364985 107 - 1.800 2.093 0.986
ENSG00000115414 E014 116.6608838 0.0013080027 4.303697e-13 1.119795e-11 2 215365505 215365630 126 - 1.890 2.166 0.925
ENSG00000115414 E015 0.0000000       2 215365631 215365753 123 -      
ENSG00000115414 E016 0.2214452 0.0406046591 5.001295e-01   2 215367679 215367862 184 - 0.000 0.121 11.472
ENSG00000115414 E017 123.7843643 0.0003699347 3.715376e-10 5.956897e-09 2 215367863 215368027 165 - 1.961 2.171 0.705
ENSG00000115414 E018 74.9256461 0.0041467738 8.053806e-04 3.277841e-03 2 215370294 215370342 49 - 1.772 1.946 0.587
ENSG00000115414 E019 64.0176094 0.0029523386 7.343725e-04 3.023135e-03 2 215370343 215370379 37 - 1.706 1.882 0.594
ENSG00000115414 E020 56.1610490 0.0004482398 1.791759e-03 6.573262e-03 2 215370380 215370432 53 - 1.665 1.816 0.512
ENSG00000115414 E021 0.1515154 0.0430329225 4.745163e-01   2 215370433 215370520 88 - 0.124 0.000 -11.824
ENSG00000115414 E022 0.0000000       2 215371864 215371908 45 -      
ENSG00000115414 E023 83.1947858 0.0003118902 5.046011e-04 2.177368e-03 2 215371909 215372015 107 - 1.839 1.978 0.468
ENSG00000115414 E024 20.9023796 0.0011090047 2.347663e-02 5.873637e-02 2 215372016 215372108 93 - 1.235 1.410 0.611
ENSG00000115414 E025 93.8403675 0.0032733523 8.544229e-02 1.681185e-01 2 215372109 215372300 192 - 1.927 2.008 0.271
ENSG00000115414 E026 50.2782323 0.0005820667 5.795621e-03 1.807614e-02 2 215372301 215372375 75 - 1.622 1.764 0.481
ENSG00000115414 E027 0.0000000       2 215372376 215372482 107 -      
ENSG00000115414 E028 61.3594272 0.0004414951 1.889127e-01 3.123899e-01 2 215373322 215373411 90 - 1.754 1.816 0.210
ENSG00000115414 E029 75.6575180 0.0009829298 2.617881e-02 6.431299e-02 2 215375214 215375393 180 - 1.824 1.922 0.329
ENSG00000115414 E030 30.5403751 0.0015600903 4.971759e-02 1.086598e-01 2 215375629 215375632 4 - 1.422 1.552 0.447
ENSG00000115414 E031 58.8674992 0.0005484826 1.611446e-02 4.298802e-02 2 215375633 215375718 86 - 1.703 1.819 0.390
ENSG00000115414 E032 0.1451727 0.0439118528 4.744392e-01   2 215375719 215375725 7 - 0.124 0.000 -11.823
ENSG00000115414 E033 99.2202123 0.0003323070 8.524921e-02 1.678100e-01 2 215376498 215376674 177 - 1.960 2.024 0.216
ENSG00000115414 E034 67.6415011 0.0003934262 9.643880e-01 9.815689e-01 2 215378175 215378262 88 - 1.830 1.835 0.016
ENSG00000115414 E035 58.1379314 0.0019583263 6.354140e-01 7.497207e-01 2 215379130 215379204 75 - 1.779 1.757 -0.072
ENSG00000115414 E036 57.1859946 0.0009091348 4.127848e-01 5.563600e-01 2 215379205 215379317 113 - 1.781 1.745 -0.123
ENSG00000115414 E037 0.2955422 0.0298235172 9.798308e-01   2 215379318 215380810 1493 - 0.124 0.121 -0.043
ENSG00000115414 E038 80.9763475 0.0004239166 1.781722e-01 2.988603e-01 2 215380811 215381080 270 - 1.939 1.889 -0.168
ENSG00000115414 E039 0.5117906 0.2751753851 6.320196e-01 7.469567e-01 2 215381081 215382002 922 - 0.220 0.123 -1.009
ENSG00000115414 E040 0.4375944 0.0297276699 8.012741e-02 1.597447e-01 2 215382003 215382048 46 - 0.299 0.000 -13.408
ENSG00000115414 E041 0.2924217 0.0273223271 1.914273e-01   2 215382049 215382158 110 - 0.220 0.000 -12.823
ENSG00000115414 E042 0.0000000       2 215382159 215382211 53 -      
ENSG00000115414 E043 53.1581730 0.0005091080 1.071992e-01 2.013921e-01 2 215382212 215382325 114 - 1.769 1.694 -0.253
ENSG00000115414 E044 58.2785115 0.0007218733 6.784028e-01 7.828846e-01 2 215383328 215383483 156 - 1.776 1.760 -0.056
ENSG00000115414 E045 53.9730674 0.0004605562 8.926183e-01 9.353902e-01 2 215384020 215384184 165 - 1.728 1.737 0.031
ENSG00000115414 E046 6.3389014 0.0027205469 9.472532e-02 1.824612e-01 2 215384185 215384859 675 - 0.966 0.764 -0.778
ENSG00000115414 E047 46.9841869 0.0062881766 1.173038e-01 2.160999e-01 2 215384860 215384976 117 - 1.723 1.627 -0.325
ENSG00000115414 E048 76.2825464 0.0003312904 3.987834e-02 9.080873e-02 2 215386689 215386958 270 - 1.927 1.847 -0.268
ENSG00000115414 E049 41.0564307 0.0033241395 4.123200e-01 5.558878e-01 2 215388212 215388301 90 - 1.646 1.600 -0.154
ENSG00000115414 E050 53.8449719 0.0042875823 2.517479e-01 3.880120e-01 2 215391632 215391814 183 - 1.769 1.708 -0.205
ENSG00000115414 E051 0.7029582 0.0172671820 3.287688e-01 4.722583e-01 2 215391815 215392930 1116 - 0.124 0.293 1.545
ENSG00000115414 E052 29.2076887 0.0228201398 7.934864e-01 8.679450e-01 2 215392931 215393203 273 - 1.488 1.470 -0.060
ENSG00000115414 E053 0.0000000       2 215393204 215393721 518 -      
ENSG00000115414 E054 54.3215618 0.0016934010 2.468478e-03 8.669500e-03 2 215394528 215394719 192 - 1.813 1.663 -0.509
ENSG00000115414 E055 36.6248363 0.0107712923 1.067720e-03 4.193250e-03 2 215397137 215397223 87 - 1.686 1.440 -0.840
ENSG00000115414 E056 48.8770679 0.0011252415 8.775163e-08 9.005083e-07 2 215397680 215397848 169 - 1.824 1.548 -0.935
ENSG00000115414 E057 37.1784873 0.0281046991 5.158965e-02 1.119800e-01 2 215399257 215399351 95 - 1.665 1.485 -0.616
ENSG00000115414 E058 62.9416062 0.0105229441 3.509656e-03 1.175409e-02 2 215404389 215404655 267 - 1.892 1.706 -0.627
ENSG00000115414 E059 55.1095697 0.0004416795 4.135964e-05 2.375894e-04 2 215406238 215406510 273 - 1.841 1.650 -0.646
ENSG00000115414 E060 47.7947554 0.0007661289 1.666905e-05 1.052458e-04 2 215407127 215407321 195 - 1.790 1.571 -0.743
ENSG00000115414 E061 36.6264561 0.0281674230 2.033633e-01 3.304108e-01 2 215408108 215408197 90 - 1.635 1.509 -0.431
ENSG00000115414 E062 22.6186751 0.0216409169 1.601723e-01 2.753504e-01 2 215408298 215408318 21 - 1.438 1.298 -0.486
ENSG00000115414 E063 40.0252519 0.0121875019 1.130460e-04 5.818519e-04 2 215408319 215408426 108 - 1.744 1.451 -0.999
ENSG00000115414 E064 47.3329222 0.0008878130 5.242776e-09 6.815537e-08 2 215409563 215409739 177 - 1.820 1.516 -1.032
ENSG00000115414 E065 0.0000000       2 215409740 215409933 194 -      
ENSG00000115414 E066 46.7370685 0.0070426910 1.466634e-05 9.378569e-05 2 215409934 215410114 181 - 1.804 1.526 -0.944
ENSG00000115414 E067 0.0000000       2 215414661 215414836 176 -      
ENSG00000115414 E068 36.5778751 0.0056785877 2.448122e-05 1.488795e-04 2 215414837 215414958 122 - 1.703 1.422 -0.962
ENSG00000115414 E069 20.0211940 0.0295618358 4.302462e-02 9.658934e-02 2 215419242 215419288 47 - 1.422 1.211 -0.737
ENSG00000115414 E070 29.8774670 0.0736727728 9.123980e-03 2.659370e-02 2 215419289 215419385 97 - 1.648 1.295 -1.215
ENSG00000115414 E071 35.8890258 0.0217944583 2.400331e-04 1.133467e-03 2 215420673 215420801 129 - 1.717 1.384 -1.138
ENSG00000115414 E072 0.1451727 0.0439118528 4.744392e-01   2 215420802 215421270 469 - 0.124 0.000 -11.823
ENSG00000115414 E073 42.5552619 0.0189390415 8.894973e-06 5.984750e-05 2 215422091 215422243 153 - 1.802 1.430 -1.268
ENSG00000115414 E074 47.1054110 0.0648715881 4.234808e-03 1.379896e-02 2 215423350 215423526 177 - 1.837 1.494 -1.166
ENSG00000115414 E075 46.6460530 0.0196754849 2.657351e-04 1.240106e-03 2 215424146 215424325 180 - 1.816 1.516 -1.017
ENSG00000115414 E076 42.6716842 0.0005431149 5.547580e-08 5.918637e-07 2 215425094 215425285 192 - 1.771 1.480 -0.992
ENSG00000115414 E077 35.4785502 0.0005704381 1.544192e-07 1.512473e-06 2 215428180 215428338 159 - 1.700 1.394 -1.050
ENSG00000115414 E078 35.5256867 0.0006166056 1.277198e-11 2.613820e-10 2 215430715 215430852 138 - 1.736 1.333 -1.380
ENSG00000115414 E079 33.8396040 0.0005868271 1.781904e-13 4.893830e-12 2 215431833 215431964 132 - 1.731 1.278 -1.555
ENSG00000115414 E080 32.6699818 0.0006281391 6.494810e-15 2.201507e-13 2 215433324 215433461 138 - 1.725 1.232 -1.700
ENSG00000115414 E081 28.0998393 0.0007051898 2.979573e-12 6.765806e-11 2 215434696 215434824 129 - 1.659 1.189 -1.625
ENSG00000115414 E082 31.1084431 0.0201161487 2.701220e-06 2.042867e-05 2 215435655 215436073 419 - 1.691 1.257 -1.495