ENSG00000114867

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000346169 ENSG00000114867 HEK293_OSMI2_2hA HEK293_TMG_2hB EIF4G1 protein_coding protein_coding 308.1723 478.2402 220.3582 9.530203 1.57035 -1.11785 50.901493 56.105008 30.88968 6.591167 4.228384 -0.860794805 0.17791667 0.117233333 0.14040000 0.02316667 7.363991e-01 2.982643e-56 FALSE TRUE
ENST00000350481 ENSG00000114867 HEK293_OSMI2_2hA HEK293_TMG_2hB EIF4G1 protein_coding protein_coding 308.1723 478.2402 220.3582 9.530203 1.57035 -1.11785 21.064529 35.908008 27.67232 5.708540 1.297119 -0.375742291 0.06575417 0.075000000 0.12556667 0.05056667 5.709346e-02 2.982643e-56 FALSE TRUE
ENST00000392537 ENSG00000114867 HEK293_OSMI2_2hA HEK293_TMG_2hB EIF4G1 protein_coding protein_coding 308.1723 478.2402 220.3582 9.530203 1.57035 -1.11785 20.696996 23.674890 23.72156 4.180740 1.726413 0.002840131 0.07227500 0.049500000 0.10776667 0.05826667 6.486445e-03 2.982643e-56 FALSE TRUE
ENST00000411531 ENSG00000114867 HEK293_OSMI2_2hA HEK293_TMG_2hB EIF4G1 protein_coding protein_coding 308.1723 478.2402 220.3582 9.530203 1.57035 -1.11785 21.047101 4.709335 37.76228 2.359655 3.158581 3.000672420 0.08967500 0.009766667 0.17120000 0.16143333 1.011962e-01 2.982643e-56 FALSE TRUE
ENST00000441154 ENSG00000114867 HEK293_OSMI2_2hA HEK293_TMG_2hB EIF4G1 protein_coding protein_coding 308.1723 478.2402 220.3582 9.530203 1.57035 -1.11785 76.955515 127.635289 29.13133 9.480411 1.681673 -2.131001820 0.23926250 0.266466667 0.13220000 -0.13426667 7.484403e-08 2.982643e-56 FALSE TRUE
ENST00000475721 ENSG00000114867 HEK293_OSMI2_2hA HEK293_TMG_2hB EIF4G1 protein_coding retained_intron 308.1723 478.2402 220.3582 9.530203 1.57035 -1.11785 56.191984 167.621592 0.00000 20.590444 0.000000 -14.033006449 0.12885417 0.350766667 0.00000000 -0.35076667 2.982643e-56 2.982643e-56 FALSE TRUE
MSTRG.24192.5 ENSG00000114867 HEK293_OSMI2_2hA HEK293_TMG_2hB EIF4G1 protein_coding   308.1723 478.2402 220.3582 9.530203 1.57035 -1.11785 6.794505 3.026928 14.69065 3.026928 4.200482 2.275195382 0.02622500 0.006433333 0.06666667 0.06023333 5.290367e-02 2.982643e-56 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000114867 E001 0.0000000       3 184314493 184314494 2 +      
ENSG00000114867 E002 0.1472490 4.289553e-02 2.657669e-01   3 184314495 184314501 7 + 0.161 0.000 -10.990
ENSG00000114867 E003 1.3974999 9.779590e-03 5.595952e-02 1.196286e-01 3 184314502 184314527 26 + 0.567 0.233 -1.925
ENSG00000114867 E004 4.9160673 1.960520e-02 1.208490e-01 2.211582e-01 3 184314528 184314540 13 + 0.888 0.658 -0.922
ENSG00000114867 E005 7.6225871 2.008824e-02 1.233722e-02 3.434151e-02 3 184314541 184314541 1 + 1.102 0.776 -1.231
ENSG00000114867 E006 13.2942267 3.564324e-02 2.362703e-02 5.904171e-02 3 184314542 184314549 8 + 1.297 1.004 -1.050
ENSG00000114867 E007 14.1788893 3.874314e-02 4.491534e-02 1.000444e-01 3 184314550 184314550 1 + 1.307 1.044 -0.938
ENSG00000114867 E008 16.0371633 2.755981e-02 1.673600e-02 4.435627e-02 3 184314551 184314551 1 + 1.370 1.086 -1.003
ENSG00000114867 E009 23.9081623 3.340601e-02 1.623247e-02 4.323707e-02 3 184314552 184314561 10 + 1.534 1.254 -0.971
ENSG00000114867 E010 25.3507016 3.118043e-02 6.284602e-03 1.935933e-02 3 184314562 184314566 5 + 1.572 1.265 -1.060
ENSG00000114867 E011 25.4979506 2.637705e-02 3.239639e-03 1.097120e-02 3 184314567 184314567 1 + 1.577 1.265 -1.079
ENSG00000114867 E012 26.2750058 2.211245e-02 2.194993e-03 7.826301e-03 3 184314568 184314568 1 + 1.587 1.281 -1.060
ENSG00000114867 E013 141.5425329 2.003838e-02 3.298955e-05 1.942612e-04 3 184314569 184314605 37 + 2.307 1.998 -1.034
ENSG00000114867 E014 155.5468361 2.050205e-02 1.067437e-04 5.530800e-04 3 184314606 184314607 2 + 2.336 2.048 -0.964
ENSG00000114867 E015 159.1043682 1.716661e-02 2.368085e-05 1.444155e-04 3 184314608 184314612 5 + 2.349 2.056 -0.981
ENSG00000114867 E016 189.0709476 1.713255e-02 1.512019e-05 9.643722e-05 3 184314613 184314618 6 + 2.425 2.129 -0.988
ENSG00000114867 E017 323.0274649 1.704536e-02 3.906273e-05 2.257227e-04 3 184314619 184314653 35 + 2.642 2.373 -0.898
ENSG00000114867 E018 346.9752168 1.527551e-02 2.876770e-05 1.719028e-04 3 184314654 184314674 21 + 2.668 2.408 -0.869
ENSG00000114867 E019 8.6940054 4.488260e-02 9.189267e-01 9.527890e-01 3 184315164 184315165 2 + 0.958 0.939 -0.072
ENSG00000114867 E020 63.6256977 1.860574e-02 7.144615e-04 2.950530e-03 3 184315166 184315407 242 + 1.938 1.670 -0.905
ENSG00000114867 E021 56.5668580 2.700806e-03 2.535084e-09 3.487250e-08 3 184315408 184315488 81 + 1.915 1.593 -1.087
ENSG00000114867 E022 346.0453348 1.178739e-02 1.190039e-05 7.771432e-05 3 184315489 184315545 57 + 2.658 2.413 -0.816
ENSG00000114867 E023 12.1306642 8.878646e-03 5.486256e-06 3.869094e-05 3 184315546 184315762 217 + 1.353 0.882 -1.702
ENSG00000114867 E024 349.9392553 6.743042e-03 2.356978e-04 1.115468e-03 3 184315763 184315856 94 + 2.615 2.451 -0.548
ENSG00000114867 E025 2.1120743 4.363223e-02 4.606695e-03 1.483923e-02 3 184315857 184316071 215 + 0.739 0.234 -2.653
ENSG00000114867 E026 28.8714827 7.157110e-04 4.425178e-02 9.884996e-02 3 184316072 184316131 60 + 1.528 1.387 -0.485
ENSG00000114867 E027 132.0982632 3.837991e-03 4.029235e-05 2.320494e-04 3 184316132 184316135 4 + 2.202 2.019 -0.615
ENSG00000114867 E028 275.6427407 5.543685e-03 1.390283e-04 6.993573e-04 3 184316136 184316191 56 + 2.512 2.347 -0.548
ENSG00000114867 E029 286.1272323 5.044025e-03 5.659817e-05 3.146138e-04 3 184316192 184316218 27 + 2.529 2.363 -0.556
ENSG00000114867 E030 3.0101658 2.118201e-01 3.892104e-03 1.284187e-02 3 184316713 184316733 21 + 0.911 0.240 -3.276
ENSG00000114867 E031 683.8484291 5.998939e-03 1.758842e-08 2.072488e-07 3 184317321 184317431 111 + 2.944 2.716 -0.760
ENSG00000114867 E032 738.2563847 3.199782e-03 1.286434e-14 4.167426e-13 3 184317432 184317497 66 + 2.983 2.744 -0.798
ENSG00000114867 E033 674.7502431 1.605938e-03 1.520850e-24 1.593587e-22 3 184317717 184317746 30 + 2.950 2.700 -0.832
ENSG00000114867 E034 559.1687567 2.468118e-03 3.476120e-18 1.790485e-16 3 184317747 184317749 3 + 2.870 2.617 -0.843
ENSG00000114867 E035 904.6103168 5.456474e-03 1.689745e-11 3.389993e-10 3 184317750 184317816 67 + 3.081 2.825 -0.855
ENSG00000114867 E036 3.6056184 6.847252e-02 2.528359e-05 1.531151e-04 3 184319199 184319243 45 + 0.998 0.235 -3.639
ENSG00000114867 E037 2.9958210 2.348574e-02 1.291485e-03 4.947285e-03 3 184319625 184319688 64 + 0.862 0.339 -2.409
ENSG00000114867 E038 980.9181710 6.285365e-03 1.280340e-10 2.219790e-09 3 184319689 184319756 68 + 3.118 2.859 -0.864
ENSG00000114867 E039 901.0714231 4.409111e-03 9.979558e-13 2.450865e-11 3 184319757 184319801 45 + 3.075 2.826 -0.825
ENSG00000114867 E040 3.5106434 3.744340e-02 3.997085e-02 9.097813e-02 3 184319802 184320296 495 + 0.835 0.495 -1.459
ENSG00000114867 E041 1.2295251 1.949223e-01 2.222849e-01 3.531398e-01 3 184320297 184320297 1 + 0.512 0.230 -1.692
ENSG00000114867 E042 0.6028395 5.012001e-01 2.969442e-01 4.382298e-01 3 184320298 184320312 15 + 0.372 0.090 -2.558
ENSG00000114867 E043 0.6028395 5.012001e-01 2.969442e-01 4.382298e-01 3 184320313 184320338 26 + 0.372 0.090 -2.558
ENSG00000114867 E044 0.6028395 5.012001e-01 2.969442e-01 4.382298e-01 3 184320339 184320445 107 + 0.372 0.090 -2.558
ENSG00000114867 E045 0.0000000       3 184320446 184320460 15 +      
ENSG00000114867 E046 0.1472490 4.289553e-02 2.657669e-01   3 184320461 184320484 24 + 0.161 0.000 -11.164
ENSG00000114867 E047 0.1472490 4.289553e-02 2.657669e-01   3 184320485 184320501 17 + 0.161 0.000 -11.164
ENSG00000114867 E048 0.1472490 4.289553e-02 2.657669e-01   3 184320502 184320537 36 + 0.161 0.000 -11.164
ENSG00000114867 E049 1.6585973 8.133366e-03 7.391312e-01 8.288369e-01 3 184320538 184320629 92 + 0.446 0.383 -0.340
ENSG00000114867 E050 1289.8136133 3.433489e-03 5.271896e-13 1.352214e-11 3 184320630 184320722 93 + 3.214 2.994 -0.732
ENSG00000114867 E051 21.2576131 8.545883e-04 1.694162e-08 2.001833e-07 3 184320843 184320926 84 + 1.556 1.131 -1.482
ENSG00000114867 E052 1040.3541027 2.945930e-03 2.533760e-09 3.485935e-08 3 184320927 184320993 67 + 3.093 2.920 -0.577
ENSG00000114867 E053 2.2444823 6.451638e-03 3.612673e-01 5.056669e-01 3 184321254 184321281 28 + 0.370 0.527 0.812
ENSG00000114867 E054 5704.6579182 2.901269e-03 6.439540e-13 1.631169e-11 3 184321282 184322103 822 + 3.839 3.655 -0.611
ENSG00000114867 E055 1798.8319443 2.116151e-03 8.160238e-12 1.723448e-10 3 184322362 184322450 89 + 3.326 3.161 -0.550
ENSG00000114867 E056 2833.2014542 1.542685e-03 5.303537e-11 9.802334e-10 3 184322544 184322730 187 + 3.504 3.370 -0.443
ENSG00000114867 E057 2247.7635105 1.102387e-03 4.369664e-10 6.916943e-09 3 184322821 184322954 134 + 3.390 3.277 -0.379
ENSG00000114867 E058 2243.5044972 1.677166e-03 8.369933e-05 4.455099e-04 3 184323083 184323218 136 + 3.372 3.286 -0.285
ENSG00000114867 E059 1010.7973938 4.137513e-03 6.177891e-02 1.296163e-01 3 184323219 184323241 23 + 3.012 2.947 -0.218
ENSG00000114867 E060 275.8548396 2.290135e-03 2.380447e-01 3.718687e-01 3 184323405 184323407 3 + 2.433 2.390 -0.146
ENSG00000114867 E061 2217.8858984 2.914644e-03 9.186446e-02 1.780240e-01 3 184323408 184323593 186 + 3.342 3.294 -0.159
ENSG00000114867 E062 2689.5987611 1.141662e-03 1.257580e-03 4.835003e-03 3 184323780 184323977 198 + 3.433 3.373 -0.196
ENSG00000114867 E063 2964.8119500 7.661382e-04 4.326638e-08 4.726276e-07 3 184324201 184324347 147 + 3.491 3.407 -0.280
ENSG00000114867 E064 3593.0851572 1.289000e-03 6.943473e-02 1.424201e-01 3 184324878 184325103 226 + 3.543 3.507 -0.117
ENSG00000114867 E065 1328.0784752 1.490383e-03 1.652637e-01 2.820173e-01 3 184325104 184325114 11 + 3.109 3.075 -0.112
ENSG00000114867 E066 1545.9416622 9.751916e-04 2.757545e-01 4.151271e-01 3 184325269 184325298 30 + 3.168 3.144 -0.078
ENSG00000114867 E067 1844.4448977 6.950083e-04 8.770350e-01 9.250278e-01 3 184325299 184325373 75 + 3.229 3.227 -0.004
ENSG00000114867 E068 5.4150857 1.087581e-01 3.041281e-01 4.461402e-01 3 184325374 184325479 106 + 0.914 0.686 -0.904
ENSG00000114867 E069 2966.0535389 4.427655e-05 1.243661e-01 2.262102e-01 3 184325480 184325639 160 + 3.429 3.434 0.017
ENSG00000114867 E070 2521.8643508 2.287153e-04 3.105811e-02 7.402629e-02 3 184325851 184325951 101 + 3.352 3.369 0.058
ENSG00000114867 E071 1.5404825 9.218265e-03 2.602497e-02 6.399732e-02 3 184325952 184325957 6 + 0.617 0.233 -2.147
ENSG00000114867 E072 3002.9422096 3.893453e-04 8.578515e-03 2.523523e-02 3 184326527 184326629 103 + 3.421 3.448 0.089
ENSG00000114867 E073 2764.6260777 8.829509e-04 7.416733e-05 4.001019e-04 3 184326881 184326983 103 + 3.361 3.422 0.203
ENSG00000114867 E074 2442.7253635 3.924028e-04 2.295663e-05 1.403422e-04 3 184327216 184327285 70 + 3.316 3.364 0.159
ENSG00000114867 E075 3227.4680770 1.363141e-04 7.552707e-22 5.902796e-20 3 184327286 184327448 163 + 3.414 3.493 0.262
ENSG00000114867 E076 2425.2184055 4.736828e-04 1.870779e-26 2.310388e-24 3 184327586 184327704 119 + 3.248 3.385 0.456
ENSG00000114867 E077 5.6335482 1.651234e-02 6.639939e-02 1.373931e-01 3 184327705 184327829 125 + 0.958 0.700 -1.009
ENSG00000114867 E078 2085.4362307 6.163175e-04 1.417984e-21 1.079792e-19 3 184327830 184327948 119 + 3.181 3.320 0.459
ENSG00000114867 E079 1363.9711967 1.223323e-03 7.259448e-10 1.104909e-08 3 184327949 184328002 54 + 3.011 3.132 0.402
ENSG00000114867 E080 9.1009214 7.331865e-03 4.563660e-10 7.198272e-09 3 184328117 184328615 499 + 1.326 0.610 -2.715
ENSG00000114867 E081 6.1999511 5.962553e-03 6.302677e-01 7.454572e-01 3 184328616 184328630 15 + 0.862 0.793 -0.270
ENSG00000114867 E082 1593.6476070 1.439382e-03 1.124790e-07 1.132063e-06 3 184328631 184328668 38 + 3.087 3.196 0.360
ENSG00000114867 E083 2524.8327120 1.359756e-03 1.437409e-06 1.154077e-05 3 184328669 184328756 88 + 3.300 3.391 0.303
ENSG00000114867 E084 20.0112020 1.531810e-03 1.634798e-02 4.349216e-02 3 184328757 184328908 152 + 1.409 1.214 -0.683
ENSG00000114867 E085 2818.9851481 1.120240e-03 5.770957e-06 4.050724e-05 3 184328909 184328990 82 + 3.358 3.435 0.258
ENSG00000114867 E086 24.4879041 7.790610e-04 9.218585e-01 9.546908e-01 3 184328991 184329135 145 + 1.370 1.370 0.001
ENSG00000114867 E087 2335.7507705 7.853938e-04 1.014818e-11 2.110597e-10 3 184331266 184331313 48 + 3.256 3.360 0.348
ENSG00000114867 E088 2128.2794774 1.671254e-03 5.715681e-14 1.681657e-12 3 184331314 184331364 51 + 3.173 3.334 0.536
ENSG00000114867 E089 21.9036676 1.453802e-02 2.157031e-06 1.665416e-05 3 184331365 184331471 107 + 1.578 1.133 -1.550
ENSG00000114867 E090 3373.9282583 2.644329e-03 6.531560e-17 2.876300e-15 3 184331472 184331606 135 + 3.332 3.546 0.713
ENSG00000114867 E091 13.2823397 5.346201e-03 2.065627e-01 3.344188e-01 3 184331697 184331727 31 + 1.198 1.067 -0.472
ENSG00000114867 E092 2849.8311608 2.790376e-03 2.800281e-17 1.289824e-15 3 184331728 184331809 82 + 3.250 3.475 0.749
ENSG00000114867 E093 22.3458192 1.495693e-03 1.561111e-22 1.321483e-20 3 184331810 184331945 136 + 1.698 0.956 -2.605
ENSG00000114867 E094 3606.6138246 3.189468e-03 4.732642e-15 1.632826e-13 3 184331946 184332086 141 + 3.357 3.576 0.727
ENSG00000114867 E095 16.2517381 2.947629e-02 1.790071e-03 6.567579e-03 3 184332087 184332105 19 + 1.410 1.047 -1.284
ENSG00000114867 E096 5543.9393278 3.691648e-03 8.969993e-18 4.438073e-16 3 184334727 184335358 632 + 3.519 3.769 0.833