ENSG00000113048

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000261413 ENSG00000113048 HEK293_OSMI2_2hA HEK293_TMG_2hB MRPS27 protein_coding protein_coding 59.79733 67.07211 55.67576 11.0519 1.324852 -0.2686195 13.653306 12.987695 13.261905 3.4485939 1.4781154 0.03011961 0.22768333 0.19116667 0.23766667 0.04650000 6.498691e-01 1.04962e-49 FALSE TRUE
ENST00000457646 ENSG00000113048 HEK293_OSMI2_2hA HEK293_TMG_2hB MRPS27 protein_coding protein_coding 59.79733 67.07211 55.67576 11.0519 1.324852 -0.2686195 3.516228 3.434987 4.862994 0.9188707 1.1672898 0.50030980 0.05762083 0.04916667 0.08710000 0.03793333 3.912935e-01 1.04962e-49 FALSE TRUE
ENST00000694998 ENSG00000113048 HEK293_OSMI2_2hA HEK293_TMG_2hB MRPS27 protein_coding nonsense_mediated_decay 59.79733 67.07211 55.67576 11.0519 1.324852 -0.2686195 1.394242 3.602906 0.000000 0.5910555 0.0000000 -8.49701578 0.02349583 0.05453333 0.00000000 -0.05453333 2.691055e-30 1.04962e-49 FALSE TRUE
ENST00000695298 ENSG00000113048 HEK293_OSMI2_2hA HEK293_TMG_2hB MRPS27 protein_coding protein_coding 59.79733 67.07211 55.67576 11.0519 1.324852 -0.2686195 33.558101 44.398451 28.825741 7.6005511 0.2721285 -0.62297615 0.55800000 0.66400000 0.51816667 -0.14583333 1.124242e-02 1.04962e-49 FALSE TRUE
MSTRG.26365.28 ENSG00000113048 HEK293_OSMI2_2hA HEK293_TMG_2hB MRPS27 protein_coding   59.79733 67.07211 55.67576 11.0519 1.324852 -0.2686195 3.269149 0.000000 4.245427 0.0000000 0.1913076 8.73316002 0.05580417 0.00000000 0.07626667 0.07626667 1.049620e-49 1.04962e-49 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000113048 E001 0.9996463 0.0129784279 7.020276e-01 8.009389e-01 5 72205040 72206632 1593 - 0.324 0.270 -0.362
ENSG00000113048 E002 0.2955422 0.0284398753 8.185523e-01   5 72206633 72207021 389 - 0.136 0.109 -0.365
ENSG00000113048 E003 2.1617915 0.1282774357 1.103145e-01 2.060126e-01 5 72214953 72215026 74 - 0.240 0.614 2.077
ENSG00000113048 E004 19.9501808 0.0035997382 3.492102e-04 1.577040e-03 5 72215027 72216084 1058 - 1.082 1.419 1.188
ENSG00000113048 E005 2.3434708 0.0935706020 3.787550e-01 5.230562e-01 5 72216085 72216137 53 - 0.393 0.587 0.958
ENSG00000113048 E006 1.5478668 0.0091320969 2.147256e-01 3.441121e-01 5 72216138 72216174 37 - 0.240 0.478 1.445
ENSG00000113048 E007 75.7918900 0.0009380468 8.905349e-03 2.604541e-02 5 72216175 72218041 1867 - 1.789 1.931 0.478
ENSG00000113048 E008 47.8816415 0.0009407024 2.984980e-04 1.373495e-03 5 72218042 72219365 1324 - 1.773 1.614 -0.538
ENSG00000113048 E009 4.0804950 0.0123642684 3.536705e-01 4.979289e-01 5 72219366 72219402 37 - 0.763 0.648 -0.477
ENSG00000113048 E010 3.0496276 0.0056734245 3.643840e-01 5.087514e-01 5 72219403 72219408 6 - 0.671 0.554 -0.514
ENSG00000113048 E011 5.1596481 0.0032409388 7.387903e-01 8.285821e-01 5 72219409 72219421 13 - 0.790 0.769 -0.082
ENSG00000113048 E012 15.7869804 0.0014684038 5.382797e-01 6.697193e-01 5 72219422 72219525 104 - 1.166 1.247 0.286
ENSG00000113048 E013 13.1789004 0.0013492036 6.500342e-01 7.611390e-01 5 72219526 72219527 2 - 1.107 1.178 0.251
ENSG00000113048 E014 18.9646330 0.0053282565 1.257540e-03 4.835003e-03 5 72219528 72219528 1 - 1.082 1.402 1.131
ENSG00000113048 E015 70.8681481 0.0077373293 7.069026e-05 3.834409e-04 5 72219529 72219545 17 - 1.670 1.939 0.910
ENSG00000113048 E016 1048.6328805 0.0037637088 8.630828e-13 2.142126e-11 5 72219546 72219939 394 - 2.854 3.091 0.786
ENSG00000113048 E017 736.7723138 0.0024844502 6.774519e-07 5.833693e-06 5 72219940 72220048 109 - 2.760 2.916 0.519
ENSG00000113048 E018 895.7137498 0.0022729726 1.045706e-04 5.431428e-04 5 72220049 72220327 279 - 2.869 2.989 0.396
ENSG00000113048 E019 636.2304425 0.0009318787 1.717123e-07 1.667198e-06 5 72220328 72220550 223 - 2.717 2.847 0.431
ENSG00000113048 E020 877.5955660 0.0002157535 1.342734e-02 3.691010e-02 5 72220551 72220852 302 - 2.904 2.966 0.205
ENSG00000113048 E021 452.4550025 0.0020833152 9.826671e-01 9.932313e-01 5 72220853 72220938 86 - 2.638 2.659 0.071
ENSG00000113048 E022 580.5609558 0.0014142476 4.742182e-01 6.130631e-01 5 72220939 72221088 150 - 2.755 2.761 0.020
ENSG00000113048 E023 374.6789865 0.0001880376 3.670167e-04 1.646640e-03 5 72221089 72221148 60 - 2.595 2.555 -0.131
ENSG00000113048 E024 0.7352249 0.3853058527 9.704552e-01 9.855152e-01 5 72222449 72222527 79 - 0.239 0.260 0.158
ENSG00000113048 E025 522.0906809 0.0001169965 3.475497e-07 3.173606e-06 5 72223683 72223802 120 - 2.747 2.695 -0.171
ENSG00000113048 E026 308.7949257 0.0001585622 3.060433e-03 1.044403e-02 5 72223803 72223850 48 - 2.508 2.477 -0.105
ENSG00000113048 E027 38.1793737 0.0006694395 4.310885e-01 5.736793e-01 5 72223851 72223916 66 - 1.599 1.583 -0.055
ENSG00000113048 E028 532.8246986 0.0001354817 1.425471e-08 1.707805e-07 5 72226057 72226199 143 - 2.761 2.700 -0.202
ENSG00000113048 E029 13.8056686 0.0043341126 8.102216e-12 1.711766e-10 5 72226828 72227049 222 - 1.435 0.790 -2.342
ENSG00000113048 E030 16.0836613 0.0268902218 3.541085e-05 2.067646e-04 5 72227050 72227275 226 - 1.441 0.973 -1.664
ENSG00000113048 E031 11.6393177 0.0050165923 1.212283e-09 1.767648e-08 5 72227276 72227645 370 - 1.357 0.748 -2.244
ENSG00000113048 E032 7.8819182 0.0086668180 7.811743e-07 6.640840e-06 5 72227646 72227762 117 - 1.198 0.619 -2.226
ENSG00000113048 E033 15.6596879 0.0274585409 1.082520e-06 8.919631e-06 5 72227763 72228265 503 - 1.464 0.898 -2.023
ENSG00000113048 E034 427.4571879 0.0015418524 3.539453e-05 2.066821e-04 5 72228266 72228368 103 - 2.674 2.592 -0.276
ENSG00000113048 E035 3.3395126 0.0047839357 2.136290e-05 1.315693e-04 5 72228369 72229553 1185 - 0.904 0.270 -3.026
ENSG00000113048 E036 432.3730029 0.0028381105 5.111123e-04 2.201352e-03 5 72232443 72232558 116 - 2.680 2.594 -0.289
ENSG00000113048 E037 287.7748307 0.0042205815 1.320645e-02 3.639159e-02 5 72234119 72234197 79 - 2.496 2.423 -0.244
ENSG00000113048 E038 294.9123564 0.0026853076 1.360374e-01 2.425246e-01 5 72238014 72238074 61 - 2.481 2.454 -0.089
ENSG00000113048 E039 300.6869160 0.0020106737 1.317758e-02 3.632474e-02 5 72238075 72238128 54 - 2.504 2.454 -0.166
ENSG00000113048 E040 0.1472490 0.0448886492 3.748481e-01   5 72238129 72238130 2 - 0.136 0.000 -12.426
ENSG00000113048 E041 0.1451727 0.0441947778 3.752772e-01   5 72241462 72241646 185 - 0.136 0.000 -12.434
ENSG00000113048 E042 1.4037158 0.0456048991 1.650350e-01 2.817437e-01 5 72241647 72241688 42 - 0.507 0.269 -1.365
ENSG00000113048 E043 0.0000000       5 72255073 72255609 537 -      
ENSG00000113048 E044 1.2661455 0.1110004951 1.097253e-01 2.051560e-01 5 72255610 72257583 1974 - 0.508 0.197 -1.948
ENSG00000113048 E045 0.0000000       5 72280850 72283504 2655 -      
ENSG00000113048 E046 0.5149111 0.0209012533 7.623841e-01 8.459687e-01 5 72283505 72283658 154 - 0.136 0.197 0.638
ENSG00000113048 E047 0.1472490 0.0448886492 3.748481e-01   5 72288115 72288814 700 - 0.136 0.000 -12.426
ENSG00000113048 E048 0.0000000       5 72288815 72288930 116 -      
ENSG00000113048 E049 0.6652806 0.0187114646 4.847694e-01 6.227200e-01 5 72290950 72292181 1232 - 0.136 0.270 1.222
ENSG00000113048 E050 0.1515154 0.0446181056 3.747216e-01   5 72294554 72294788 235 - 0.136 0.000 -12.430
ENSG00000113048 E051 0.2214452 0.0867075499 6.234309e-01   5 72295315 72295530 216 - 0.000 0.110 10.964
ENSG00000113048 E052 195.7298902 0.0006769185 8.187188e-04 3.326267e-03 5 72295531 72295548 18 - 2.329 2.264 -0.220
ENSG00000113048 E053 236.4610683 0.0006364767 3.144640e-04 1.438714e-03 5 72295549 72295589 41 - 2.411 2.347 -0.216
ENSG00000113048 E054 233.7118927 0.0015750022 4.853664e-05 2.743748e-04 5 72297632 72297702 71 - 2.422 2.326 -0.318
ENSG00000113048 E055 0.0000000       5 72297919 72298263 345 -      
ENSG00000113048 E056 0.4439371 0.0215635917 4.778140e-02 1.052298e-01 5 72299589 72303872 4284 - 0.324 0.000 -14.405
ENSG00000113048 E057 1.8413458 0.0087745979 3.154066e-01 4.581734e-01 5 72307718 72307898 181 - 0.324 0.518 1.052
ENSG00000113048 E058 3.7203310 0.0043362562 5.857463e-01 7.093883e-01 5 72307899 72308099 201 - 0.597 0.701 0.445
ENSG00000113048 E059 4.2769706 0.0040961085 1.493603e-01 2.607841e-01 5 72308100 72308813 714 - 0.554 0.790 1.000
ENSG00000113048 E060 199.2181632 0.0044544808 3.325446e-04 1.510528e-03 5 72314081 72314151 71 - 2.365 2.244 -0.405
ENSG00000113048 E061 125.4001109 0.0058324413 4.773047e-04 2.073135e-03 5 72314152 72314158 7 - 2.178 2.033 -0.486
ENSG00000113048 E062 8.1368066 0.0092690141 7.157278e-02 1.459522e-01 5 72320000 72320148 149 - 1.054 0.864 -0.710
ENSG00000113048 E063 124.0137899 0.0168897978 1.541479e-02 4.143307e-02 5 72320149 72320180 32 - 2.172 2.025 -0.491
ENSG00000113048 E064 110.8126759 0.0161838582 7.172026e-03 2.167050e-02 5 72320181 72320233 53 - 2.132 1.970 -0.545
ENSG00000113048 E065 9.2876550 0.1671517086 2.502808e-01 3.862600e-01 5 72320234 72320526 293 - 1.109 0.917 -0.708
ENSG00000113048 E066 0.5149242 0.2613104640 8.060205e-01 8.766894e-01 5 72320617 72320726 110 - 0.137 0.198 0.643
ENSG00000113048 E067 0.3332198 0.0307839054 8.222684e-01   5 72320727 72320812 86 - 0.136 0.110 -0.362
ENSG00000113048 E068 0.0000000       5 72321508 72321717 210 -