ENSG00000112769

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000368638 ENSG00000112769 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA4 protein_coding protein_coding 6.769537 14.23319 4.071787 0.5121189 0.5629005 -1.802999 2.9319681 6.620770313 1.4292355 0.365135013 0.4270315 -2.20387381 0.38910417 0.4645666667 0.3355333 -0.12903333 2.758963e-01 1.411668e-20 FALSE TRUE
ENST00000368640 ENSG00000112769 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA4 protein_coding protein_coding 6.769537 14.23319 4.071787 0.5121189 0.5629005 -1.802999 0.2364545 0.377034045 0.3660007 0.135523446 0.1953749 -0.04172523 0.04350833 0.0265666667 0.1063000 0.07973333 7.324990e-01 1.411668e-20 FALSE TRUE
ENST00000424408 ENSG00000112769 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA4 protein_coding protein_coding 6.769537 14.23319 4.071787 0.5121189 0.5629005 -1.802999 0.2880417 0.008872086 0.6470535 0.008872086 0.1662081 5.12168516 0.07367917 0.0006333333 0.1750333 0.17440000 2.467798e-08 1.411668e-20 FALSE TRUE
ENST00000453937 ENSG00000112769 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA4 protein_coding protein_coding 6.769537 14.23319 4.071787 0.5121189 0.5629005 -1.802999 1.1174795 3.273665292 0.0000000 0.287444298 0.0000000 -8.35916327 0.14092500 0.2294333333 0.0000000 -0.22943333 1.411668e-20 1.411668e-20 FALSE TRUE
ENST00000522006 ENSG00000112769 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA4 protein_coding protein_coding 6.769537 14.23319 4.071787 0.5121189 0.5629005 -1.802999 0.7007698 0.820753539 0.8464358 0.094854383 0.1925695 0.04392451 0.13427083 0.0576333333 0.2087333 0.15110000 2.891781e-04 1.411668e-20 FALSE TRUE
ENST00000651529 ENSG00000112769 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA4 protein_coding nonsense_mediated_decay 6.769537 14.23319 4.071787 0.5121189 0.5629005 -1.802999 0.7348693 1.728909350 0.3598493 0.127789360 0.2130725 -2.23317318 0.08882083 0.1215333333 0.0774000 -0.04413333 6.956773e-01 1.411668e-20 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000112769 E001 0.4741261 0.0208484521 4.277114e-01 5.705479e-01 6 112107931 112108756 826 - 0.233 0.113 -1.257
ENSG00000112769 E002 0.3289534 0.0290600359 8.508915e-01   6 112108757 112108859 103 - 0.132 0.113 -0.257
ENSG00000112769 E003 3.5708788 0.0044605644 3.461438e-01 4.903092e-01 6 112108860 112109148 289 - 0.543 0.713 0.743
ENSG00000112769 E004 3.4610934 0.0455792781 2.288629e-01 3.610949e-01 6 112109149 112109172 24 - 0.496 0.735 1.055
ENSG00000112769 E005 16.2717374 0.0280010805 3.028403e-01 4.447693e-01 6 112109173 112109292 120 - 1.140 1.296 0.552
ENSG00000112769 E006 46.1332363 0.0207708027 4.964502e-02 1.085344e-01 6 112109293 112109582 290 - 1.533 1.747 0.730
ENSG00000112769 E007 22.0782687 0.0444439188 1.492946e-01 2.607078e-01 6 112114076 112114195 120 - 1.213 1.444 0.805
ENSG00000112769 E008 21.7984377 0.0085028934 3.822560e-02 8.777310e-02 6 112114663 112114756 94 - 1.212 1.425 0.742
ENSG00000112769 E009 22.3437429 0.0202205440 7.233575e-01 8.172098e-01 6 112115863 112115993 131 - 1.313 1.380 0.233
ENSG00000112769 E010 22.0260820 0.0009197975 6.174556e-01 7.352601e-01 6 112117739 112117898 160 - 1.313 1.384 0.247
ENSG00000112769 E011 18.5069648 0.0041268629 6.671023e-01 7.744369e-01 6 112119156 112119311 156 - 1.290 1.288 -0.006
ENSG00000112769 E012 22.6647990 0.0013195542 6.064907e-01 7.266267e-01 6 112120283 112120472 190 - 1.328 1.400 0.249
ENSG00000112769 E013 0.0000000       6 112121775 112122013 239 -      
ENSG00000112769 E014 11.8802122 0.0015487135 5.827785e-01 7.070577e-01 6 112122014 112122060 47 - 1.054 1.140 0.311
ENSG00000112769 E015 18.9867136 0.0011085799 8.464097e-01 9.045512e-01 6 112122061 112122201 141 - 1.266 1.315 0.172
ENSG00000112769 E016 20.2537775 0.0009351126 6.553388e-01 7.652410e-01 6 112128922 112129075 154 - 1.321 1.321 0.002
ENSG00000112769 E017 11.0617692 0.0015957798 6.543017e-01 7.645061e-01 6 112129876 112129893 18 - 1.080 1.069 -0.041
ENSG00000112769 E018 22.6267482 0.0009063689 5.016109e-01 6.377507e-01 6 112129894 112130040 147 - 1.376 1.362 -0.048
ENSG00000112769 E019 0.0000000       6 112130041 112130159 119 -      
ENSG00000112769 E020 20.1887523 0.0010251782 5.260220e-01 6.593114e-01 6 112130968 112131101 134 - 1.274 1.356 0.288
ENSG00000112769 E021 16.7664563 0.0011119671 9.020521e-01 9.415900e-01 6 112132753 112132890 138 - 1.231 1.254 0.084
ENSG00000112769 E022 10.3879928 0.0016665820 7.232398e-01 8.171011e-01 6 112133349 112133487 139 - 1.011 1.080 0.251
ENSG00000112769 E023 9.9180986 0.0017701046 1.661472e-01 2.831959e-01 6 112134467 112134609 143 - 1.093 0.984 -0.399
ENSG00000112769 E024 0.0000000       6 112135825 112136122 298 -      
ENSG00000112769 E025 12.0015424 0.0156535087 3.334822e-01 4.772088e-01 6 112136123 112136254 132 - 1.151 1.079 -0.259
ENSG00000112769 E026 14.8179112 0.0074054439 1.066354e-02 3.036535e-02 6 112139120 112139291 172 - 1.298 1.091 -0.734
ENSG00000112769 E027 12.8708003 0.0089296318 2.500556e-05 1.516289e-04 6 112139752 112139885 134 - 1.321 0.927 -1.420
ENSG00000112769 E028 11.9639229 0.0240621620 4.704610e-03 1.510916e-02 6 112140760 112140922 163 - 1.257 0.956 -1.087
ENSG00000112769 E029 10.5566081 0.0016279444 1.346112e-05 8.679060e-05 6 112141358 112141503 146 - 1.248 0.842 -1.490
ENSG00000112769 E030 6.2795687 0.0025927864 8.392701e-04 3.399192e-03 6 112142119 112142143 25 - 1.040 0.660 -1.480
ENSG00000112769 E031 11.3151552 0.0019332144 7.432559e-06 5.085142e-05 6 112142144 112142292 149 - 1.282 0.878 -1.471
ENSG00000112769 E032 10.5400099 0.0519435056 4.108744e-02 9.304420e-02 6 112144794 112144933 140 - 1.193 0.947 -0.898
ENSG00000112769 E033 11.9581454 0.0693624145 1.198880e-01 2.198153e-01 6 112148157 112148336 180 - 1.213 1.026 -0.674
ENSG00000112769 E034 0.0000000       6 112150436 112150510 75 -      
ENSG00000112769 E035 9.7816274 0.1410391666 2.014570e-01 3.280000e-01 6 112150511 112150627 117 - 1.130 0.939 -0.701
ENSG00000112769 E036 8.3487192 0.1691100089 3.237808e-02 7.658605e-02 6 112154851 112154947 97 - 1.153 0.761 -1.470
ENSG00000112769 E037 9.1443951 0.0018533057 7.391388e-03 2.223578e-02 6 112155565 112155706 142 - 1.129 0.878 -0.927
ENSG00000112769 E038 10.9065016 0.0025497138 1.921940e-05 1.197086e-04 6 112158732 112158880 149 - 1.257 0.861 -1.449
ENSG00000112769 E039 5.0941671 0.0033080403 8.011809e-06 5.439995e-05 6 112165160 112165171 12 - 1.026 0.445 -2.427
ENSG00000112769 E040 9.3135953 0.0099284524 5.158722e-06 3.660453e-05 6 112165172 112165276 105 - 1.230 0.738 -1.841
ENSG00000112769 E041 0.2987644 0.0269961155 1.397157e-01   6 112171630 112172610 981 - 0.233 0.000 -13.367
ENSG00000112769 E042 11.8048672 0.0014874295 1.579949e-04 7.828343e-04 6 112172611 112172804 194 - 1.257 0.927 -1.197
ENSG00000112769 E043 13.0492151 0.0294771845 2.078250e-03 7.466685e-03 6 112175313 112175480 168 - 1.298 0.962 -1.210
ENSG00000112769 E044 11.2347922 0.0015324836 7.868744e-08 8.154422e-07 6 112178121 112178232 112 - 1.306 0.803 -1.842
ENSG00000112769 E045 0.0000000       6 112178233 112179502 1270 -      
ENSG00000112769 E046 0.2965864 0.1796390300 3.292293e-01   6 112179735 112179765 31 - 0.000 0.200 11.577
ENSG00000112769 E047 2.5108797 0.0070852682 1.848668e-01 3.073117e-01 6 112179766 112179949 184 - 0.384 0.631 1.201
ENSG00000112769 E048 13.1503211 0.0013527040 1.339902e-05 8.642256e-05 6 112185237 112185318 82 - 1.321 0.956 -1.310
ENSG00000112769 E049 9.1120150 0.0018314544 1.561452e-02 4.187604e-02 6 112185319 112185347 29 - 1.117 0.895 -0.821
ENSG00000112769 E050 14.4978446 0.0021572448 2.130650e-03 7.629192e-03 6 112187450 112187601 152 - 1.306 1.069 -0.842
ENSG00000112769 E051 0.4417471 0.5746282425 2.013424e-01 3.278562e-01 6 112188892 112189109 218 - 0.315 0.000 -12.789
ENSG00000112769 E052 3.0227732 0.0061585916 3.157985e-01 4.585751e-01 6 112189110 112189130 21 - 0.659 0.529 -0.577
ENSG00000112769 E053 11.2283622 0.0166203264 3.258222e-01 4.692567e-01 6 112189131 112189205 75 - 1.117 1.037 -0.291
ENSG00000112769 E054 10.4671275 0.0347983850 3.122876e-01 4.548260e-01 6 112191636 112191718 83 - 1.106 1.000 -0.385
ENSG00000112769 E055 11.4567308 0.0015416719 1.210814e-01 2.214826e-01 6 112191719 112191850 132 - 1.151 1.034 -0.422
ENSG00000112769 E056 0.0000000       6 112200133 112200175 43 -      
ENSG00000112769 E057 6.1736694 0.0058619304 1.247365e-02 3.467339e-02 6 112201608 112201688 81 - 0.995 0.713 -1.093
ENSG00000112769 E058 7.6506364 0.0050104739 1.589967e-02 4.251079e-02 6 112207021 112207122 102 - 1.054 0.804 -0.943
ENSG00000112769 E059 6.3304663 0.0031007540 1.546696e-01 2.679722e-01 6 112207123 112207145 23 - 0.928 0.783 -0.560
ENSG00000112769 E060 0.5901394 0.3439244683 7.795364e-01 8.582552e-01 6 112213543 112213929 387 - 0.132 0.210 0.804
ENSG00000112769 E061 1.1782025 0.5182008179 9.221154e-01 9.548711e-01 6 112213930 112214070 141 - 0.233 0.363 0.881
ENSG00000112769 E062 7.8344026 0.0298500651 1.273740e-01 2.304849e-01 6 112216368 112216401 34 - 1.025 0.847 -0.670
ENSG00000112769 E063 6.5475736 0.0028039471 2.716931e-02 6.634116e-02 6 112216402 112216420 19 - 0.995 0.761 -0.901
ENSG00000112769 E064 8.4005581 0.0023404981 4.375533e-01 5.795144e-01 6 112216421 112216469 49 - 0.995 0.942 -0.200
ENSG00000112769 E065 0.3268771 0.0288450203 8.499525e-01   6 112216636 112216754 119 - 0.132 0.113 -0.256
ENSG00000112769 E066 0.4031496 0.0254641311 2.773636e-01 4.169235e-01 6 112253782 112253783 2 - 0.000 0.203 12.044
ENSG00000112769 E067 0.9880035 0.1539429032 5.062261e-02 1.102638e-01 6 112253784 112253789 6 - 0.000 0.402 12.892
ENSG00000112769 E068 24.1375500 0.0141231047 9.297581e-13 2.294683e-11 6 112253790 112253955 166 - 0.777 1.578 2.888
ENSG00000112769 E069 100.9447235 0.0064880854 2.980133e-21 2.196799e-19 6 112253956 112254291 336 - 1.603 2.150 1.842
ENSG00000112769 E070 1.3567018 0.0116768055 3.890189e-02 8.900027e-02 6 112254292 112254401 110 - 0.543 0.203 -2.065
ENSG00000112769 E071 0.9631001 0.3564414624 9.817709e-01 9.926432e-01 6 112254402 112254441 40 - 0.234 0.290 0.411
ENSG00000112769 E072 13.3278908 0.0273632088 1.318970e-07 1.309548e-06 6 112254442 112254458 17 - 0.543 1.321 3.001
ENSG00000112769 E073 44.3900055 0.0263744658 1.680768e-09 2.388004e-08 6 112254459 112254595 137 - 1.162 1.813 2.246
ENSG00000112769 E074 4.7239385 0.0039510518 4.532177e-03 1.463352e-02 6 112254596 112254722 127 - 0.444 0.894 1.943
ENSG00000112769 E075 0.0000000       6 112254786 112254939 154 -