ENSG00000112159

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000369393 ENSG00000112159 HEK293_OSMI2_2hA HEK293_TMG_2hB MDN1 protein_coding protein_coding 24.14793 37.37084 12.17234 0.6057303 1.128975 -1.617508 7.552505 7.4150610 6.757926 0.7521374 0.37949102 -0.133689 0.3975333 0.19860000 0.5591667 0.3605667 1.499780e-12 1.49978e-12 FALSE TRUE
ENST00000487831 ENSG00000112159 HEK293_OSMI2_2hA HEK293_TMG_2hB MDN1 protein_coding nonsense_mediated_decay 24.14793 37.37084 12.17234 0.6057303 1.128975 -1.617508 13.716989 29.0564526 2.134121 1.4511434 0.65457448 -3.760897 0.4255292 0.77733333 0.1681667 -0.6091667 9.057089e-11 1.49978e-12   FALSE
MSTRG.28654.5 ENSG00000112159 HEK293_OSMI2_2hA HEK293_TMG_2hB MDN1 protein_coding   24.14793 37.37084 12.17234 0.6057303 1.128975 -1.617508 2.812577 0.8993262 3.239091 0.5447681 0.08467137 1.837166 0.1721667 0.02406667 0.2696667 0.2456000 6.251534e-02 1.49978e-12 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000112159 E001 0.3634088 0.2436138724 2.873993e-01   6 89642498 89642774 277 - 0.000 0.218 10.432
ENSG00000112159 E002 67.9773966 0.0154995659 1.796620e-15 6.570739e-14 6 89642775 89642858 84 - 1.347 2.029 2.319
ENSG00000112159 E003 206.1984061 0.0150461808 7.646468e-19 4.286136e-17 6 89642859 89642941 83 - 1.858 2.500 2.148
ENSG00000112159 E004 447.6082464 0.0198233591 5.205760e-20 3.307228e-18 6 89642942 89643212 271 - 2.146 2.844 2.329
ENSG00000112159 E005 450.4057546 0.0174948141 9.905299e-15 3.260694e-13 6 89643213 89643511 299 - 2.265 2.824 1.863
ENSG00000112159 E006 481.7321057 0.0041325000 4.904765e-33 1.026733e-30 6 89643512 89643942 431 - 2.368 2.833 1.549
ENSG00000112159 E007 289.2719336 0.0001991828 7.720900e-55 6.332040e-52 6 89643943 89644193 251 - 2.194 2.591 1.325
ENSG00000112159 E008 228.6863067 0.0005018372 1.054613e-27 1.456219e-25 6 89645015 89645157 143 - 2.142 2.472 1.099
ENSG00000112159 E009 143.8635271 0.0003135156 2.629627e-25 2.951274e-23 6 89646540 89646603 64 - 1.908 2.282 1.251
ENSG00000112159 E010 192.1040092 0.0002229342 4.227405e-29 6.575281e-27 6 89648032 89648146 115 - 2.053 2.400 1.162
ENSG00000112159 E011 146.5346922 0.0002545663 5.785224e-21 4.157789e-19 6 89648256 89648329 74 - 1.947 2.280 1.114
ENSG00000112159 E012 229.7723007 0.0001925970 1.075470e-24 1.142066e-22 6 89650024 89650198 175 - 2.173 2.465 0.976
ENSG00000112159 E013 184.4197305 0.0004623958 9.914500e-15 3.263155e-13 6 89650732 89650847 116 - 2.102 2.360 0.863
ENSG00000112159 E014 174.3560125 0.0005333041 2.896347e-10 4.725728e-09 6 89652192 89652281 90 - 2.102 2.324 0.744
ENSG00000112159 E015 214.2547679 0.0002236337 9.504017e-11 1.683032e-09 6 89652992 89653155 164 - 2.204 2.405 0.672
ENSG00000112159 E016 181.3230956 0.0002888786 1.503465e-03 5.646959e-03 6 89654164 89654334 171 - 2.180 2.304 0.413
ENSG00000112159 E017 174.5771379 0.0014010629 2.351334e-01 3.685085e-01 6 89655764 89655968 205 - 2.194 2.270 0.253
ENSG00000112159 E018 121.2014270 0.0020590985 9.879031e-02 1.886352e-01 6 89656700 89656801 102 - 2.024 2.125 0.337
ENSG00000112159 E019 165.2958960 0.0034567968 2.014114e-02 5.178015e-02 6 89658209 89658370 162 - 2.140 2.270 0.434
ENSG00000112159 E020 245.3963841 0.0003243416 1.948999e-04 9.422547e-04 6 89658610 89658917 308 - 2.310 2.437 0.424
ENSG00000112159 E021 164.0288073 0.0130793985 2.015627e-01 3.281326e-01 6 89661431 89661578 148 - 2.138 2.266 0.425
ENSG00000112159 E022 167.4802456 0.0086978264 6.877866e-01 7.900555e-01 6 89662087 89662239 153 - 2.185 2.250 0.219
ENSG00000112159 E023 192.9012987 0.0002109163 1.771538e-01 2.975288e-01 6 89662792 89662967 176 - 2.280 2.281 0.005
ENSG00000112159 E024 142.7811540 0.0002561851 2.612399e-01 3.988806e-01 6 89664487 89664628 142 - 2.149 2.152 0.009
ENSG00000112159 E025 127.2382966 0.0013961959 5.238858e-01 6.575193e-01 6 89668014 89668151 138 - 2.065 2.127 0.207
ENSG00000112159 E026 0.3729606 0.0304321771 9.493367e-01 9.722829e-01 6 89670918 89670918 1 - 0.123 0.122 -0.006
ENSG00000112159 E027 119.2259625 0.0040366990 6.118815e-01 7.309267e-01 6 89670919 89671080 162 - 2.063 2.081 0.059
ENSG00000112159 E028 114.5351003 0.0107340102 4.570699e-01 5.974396e-01 6 89672200 89672363 164 - 2.056 2.056 0.000
ENSG00000112159 E029 0.5503986 0.0198317729 6.194988e-01 7.368850e-01 6 89672364 89672546 183 - 0.123 0.217 0.994
ENSG00000112159 E030 114.5998581 0.0017716580 9.553618e-02 1.836963e-01 6 89672547 89672702 156 - 2.068 2.042 -0.088
ENSG00000112159 E031 121.5036691 0.0061583014 1.605104e-01 2.758115e-01 6 89673236 89673462 227 - 2.095 2.071 -0.078
ENSG00000112159 E032 149.0156633 0.0023130007 2.840744e-01 4.242856e-01 6 89674104 89674589 486 - 2.169 2.170 0.004
ENSG00000112159 E033 64.5936772 0.0004930829 1.899592e-01 3.137069e-01 6 89675464 89675579 116 - 1.821 1.799 -0.074
ENSG00000112159 E034 65.2137032 0.0054769909 4.533433e-02 1.008046e-01 6 89676102 89676207 106 - 1.854 1.785 -0.235
ENSG00000112159 E035 77.8806025 0.0089539537 5.472778e-02 1.175219e-01 6 89677570 89677696 127 - 1.931 1.860 -0.236
ENSG00000112159 E036 78.2906730 0.0003314897 2.899694e-03 9.968271e-03 6 89678599 89678745 147 - 1.937 1.854 -0.280
ENSG00000112159 E037 73.5742513 0.0010147175 4.578122e-04 1.997815e-03 6 89680589 89680751 163 - 1.927 1.813 -0.386
ENSG00000112159 E038 74.9774557 0.0003564354 3.172753e-03 1.077512e-02 6 89683132 89683330 199 - 1.919 1.834 -0.286
ENSG00000112159 E039 44.1443055 0.0024008030 7.976492e-03 2.371847e-02 6 89683831 89683904 74 - 1.704 1.588 -0.394
ENSG00000112159 E040 48.5510834 0.0004483273 9.443030e-02 1.820225e-01 6 89684876 89684985 110 - 1.715 1.667 -0.165
ENSG00000112159 E041 62.3536826 0.0004335945 1.374304e-02 3.763755e-02 6 89685827 89685973 147 - 1.836 1.762 -0.251
ENSG00000112159 E042 65.8667169 0.0046694703 7.760685e-07 6.601061e-06 6 89686902 89687023 122 - 1.932 1.703 -0.775
ENSG00000112159 E043 66.4487413 0.0014395647 9.998769e-09 1.233222e-07 6 89687344 89687438 95 - 1.939 1.710 -0.772
ENSG00000112159 E044 53.7432327 0.0009211398 6.232657e-08 6.590155e-07 6 89688078 89688173 96 - 1.844 1.612 -0.786
ENSG00000112159 E045 97.8418043 0.0022452325 4.179289e-12 9.255948e-11 6 89688573 89688808 236 - 2.112 1.857 -0.855
ENSG00000112159 E046 96.3216506 0.0033129738 3.778183e-06 2.765204e-05 6 89689870 89690143 274 - 2.067 1.898 -0.567
ENSG00000112159 E047 61.6312540 0.0004010131 1.689010e-06 1.335188e-05 6 89690673 89690834 162 - 1.879 1.699 -0.609
ENSG00000112159 E048 154.2632386 0.0041081127 8.641180e-09 1.077784e-07 6 89692443 89693148 706 - 2.286 2.084 -0.675
ENSG00000112159 E049 0.0000000       6 89693149 89693153 5 -      
ENSG00000112159 E050 24.0695288 0.0008152698 5.847925e-05 3.238939e-04 6 89694074 89694078 5 - 1.510 1.260 -0.865
ENSG00000112159 E051 46.2794978 0.0004957881 6.501790e-07 5.621581e-06 6 89694079 89694183 105 - 1.779 1.557 -0.754
ENSG00000112159 E052 82.3742488 0.0111693123 5.807083e-07 5.075123e-06 6 89695605 89695992 388 - 2.048 1.767 -0.944
ENSG00000112159 E053 64.8794431 0.0090142533 5.161072e-08 5.550035e-07 6 89696360 89696574 215 - 1.953 1.647 -1.034
ENSG00000112159 E054 50.1952011 0.0306623481 6.628275e-05 3.621152e-04 6 89698865 89699035 171 - 1.861 1.510 -1.190
ENSG00000112159 E055 48.1291271 0.0069486199 1.999023e-09 2.798204e-08 6 89699601 89699727 127 - 1.843 1.488 -1.205
ENSG00000112159 E056 51.6166421 0.0276420872 4.142304e-05 2.378959e-04 6 89700063 89700183 121 - 1.869 1.532 -1.141
ENSG00000112159 E057 42.1363087 0.0535046694 6.594682e-04 2.750342e-03 6 89700184 89700294 111 - 1.789 1.438 -1.194
ENSG00000112159 E058 52.5172834 0.0496953368 3.671135e-04 1.646938e-03 6 89700646 89700856 211 - 1.882 1.528 -1.197
ENSG00000112159 E059 36.8415757 0.0759969645 2.366900e-02 5.912865e-02 6 89701558 89701678 121 - 1.688 1.448 -0.819
ENSG00000112159 E060 37.3633684 0.0405664505 9.968045e-02 1.900006e-01 6 89701904 89702061 158 - 1.641 1.517 -0.423
ENSG00000112159 E061 39.1642224 0.0273934631 1.145250e-02 3.224028e-02 6 89706059 89706192 134 - 1.695 1.493 -0.690
ENSG00000112159 E062 40.1460154 0.0131047628 2.631930e-06 1.995271e-05 6 89707361 89707476 116 - 1.759 1.429 -1.126
ENSG00000112159 E063 36.0370985 0.0088015743 1.418713e-05 9.097619e-05 6 89708496 89708628 133 - 1.696 1.412 -0.971
ENSG00000112159 E064 31.1393876 0.0164924655 1.140788e-03 4.440221e-03 6 89710681 89710794 114 - 1.618 1.378 -0.821
ENSG00000112159 E065 46.0600602 0.0156897179 3.350530e-05 1.968760e-04 6 89712036 89712256 221 - 1.800 1.517 -0.962
ENSG00000112159 E066 44.5132008 0.0031889687 5.844594e-10 9.054963e-09 6 89712575 89712786 212 - 1.802 1.472 -1.123
ENSG00000112159 E067 33.6047712 0.0190115100 1.964296e-04 9.487059e-04 6 89713148 89713296 149 - 1.669 1.383 -0.979
ENSG00000112159 E068 45.1423953 0.0303287013 5.588301e-06 3.934322e-05 6 89714543 89714751 209 - 1.840 1.428 -1.401
ENSG00000112159 E069 37.1836432 0.0006998338 4.396741e-15 1.525490e-13 6 89715653 89715769 117 - 1.762 1.331 -1.474
ENSG00000112159 E070 37.1571700 0.0072355481 6.733980e-12 1.442483e-10 6 89716650 89716809 160 - 1.774 1.317 -1.564
ENSG00000112159 E071 56.4993542 0.0038197361 3.868854e-14 1.166549e-12 6 89718366 89718627 262 - 1.926 1.538 -1.313
ENSG00000112159 E072 53.4597320 0.0120066008 7.193811e-10 1.097123e-08 6 89718767 89719030 264 - 1.907 1.502 -1.372
ENSG00000112159 E073 29.3158710 0.0062453954 1.990650e-09 2.788068e-08 6 89719136 89719225 90 - 1.654 1.238 -1.435
ENSG00000112159 E074 35.6223349 0.0085569647 1.176540e-09 1.720509e-08 6 89722955 89723143 189 - 1.739 1.326 -1.417
ENSG00000112159 E075 28.0290027 0.0007026478 1.202992e-12 2.913992e-11 6 89723512 89723619 108 - 1.648 1.202 -1.540
ENSG00000112159 E076 41.6250545 0.0061038159 6.804344e-16 2.628594e-14 6 89725199 89725396 198 - 1.834 1.319 -1.760
ENSG00000112159 E077 33.5910928 0.0467606197 1.060601e-05 7.008046e-05 6 89727833 89727955 123 - 1.732 1.259 -1.623
ENSG00000112159 E078 39.0300036 0.0273375726 8.930027e-07 7.493652e-06 6 89728931 89729139 209 - 1.790 1.344 -1.523
ENSG00000112159 E079 39.2789743 0.0315577908 1.265451e-06 1.028291e-05 6 89730726 89730923 198 - 1.795 1.343 -1.547
ENSG00000112159 E080 42.4234083 0.0358463162 7.566041e-09 9.534147e-08 6 89732557 89732775 219 - 1.858 1.282 -1.973
ENSG00000112159 E081 27.6089199 0.0016421232 1.992729e-16 8.248121e-15 6 89738326 89738455 130 - 1.669 1.114 -1.928
ENSG00000112159 E082 30.0997310 0.0019744263 1.833981e-16 7.634413e-15 6 89740234 89740378 145 - 1.702 1.165 -1.854
ENSG00000112159 E083 28.2742306 0.0028509650 3.386731e-09 4.552335e-08 6 89743150 89743280 131 - 1.631 1.252 -1.308
ENSG00000112159 E084 27.2586976 0.0097900665 2.055956e-05 1.271778e-04 6 89743576 89743714 139 - 1.589 1.284 -1.056
ENSG00000112159 E085 29.1472926 0.0191862115 1.871381e-07 1.803202e-06 6 89745273 89745411 139 - 1.663 1.215 -1.547
ENSG00000112159 E086 28.7013138 0.0241885097 4.261282e-09 5.620603e-08 6 89745492 89745626 135 - 1.688 1.129 -1.937
ENSG00000112159 E087 22.4750145 0.0332725771 9.165917e-08 9.369532e-07 6 89747329 89747470 142 - 1.594 1.006 -2.064
ENSG00000112159 E088 24.9505761 0.0007645792 5.619454e-19 3.188346e-17 6 89749223 89749369 147 - 1.648 1.017 -2.206
ENSG00000112159 E089 32.3062889 0.0233923380 5.850860e-09 7.548028e-08 6 89749543 89749751 209 - 1.731 1.204 -1.817
ENSG00000112159 E090 32.3257549 0.0293039393 8.049051e-08 8.326245e-07 6 89750354 89750532 179 - 1.729 1.213 -1.775
ENSG00000112159 E091 35.4153910 0.0157494862 3.895348e-10 6.224376e-09 6 89751431 89751582 152 - 1.764 1.261 -1.729
ENSG00000112159 E092 31.4302492 0.0276629201 1.176654e-06 9.629096e-06 6 89753512 89753622 111 - 1.698 1.241 -1.574
ENSG00000112159 E093 30.0145632 0.0113330427 2.614469e-08 2.979135e-07 6 89754083 89754230 148 - 1.672 1.245 -1.472
ENSG00000112159 E094 23.2742371 0.0008419602 1.172584e-12 2.844698e-11 6 89756277 89756390 114 - 1.586 1.092 -1.725
ENSG00000112159 E095 19.4371441 0.0010339060 2.520003e-10 4.146678e-09 6 89758255 89758351 97 - 1.505 1.031 -1.672
ENSG00000112159 E096 24.8792714 0.0070029358 3.066903e-14 9.390909e-13 6 89758816 89758960 145 - 1.641 1.031 -2.134
ENSG00000112159 E097 25.4618775 0.0052346322 8.538694e-20 5.291560e-18 6 89761645 89761748 104 - 1.678 0.944 -2.584
ENSG00000112159 E098 39.7742773 0.0005477077 5.805307e-30 9.775982e-28 6 89762319 89762530 212 - 1.848 1.193 -2.252
ENSG00000112159 E099 22.0497947 0.0008419803 7.979617e-21 5.641821e-19 6 89771561 89771621 61 - 1.618 0.893 -2.571
ENSG00000112159 E100 29.4683981 0.0006842587 7.680166e-27 9.764996e-25 6 89772573 89772721 149 - 1.737 1.004 -2.559
ENSG00000112159 E101 19.3767959 0.0009576577 1.040576e-17 5.100409e-16 6 89774621 89774733 113 - 1.555 0.855 -2.502
ENSG00000112159 E102 17.9850550 0.0014255499 1.070430e-13 3.028522e-12 6 89776600 89776695 96 - 1.505 0.893 -2.186
ENSG00000112159 E103 16.9657107 0.0837737519 3.071796e-04 1.408653e-03 6 89780212 89780293 82 - 1.471 0.915 -1.987
ENSG00000112159 E104 25.7293829 0.0631755168 4.782980e-05 2.707668e-04 6 89781399 89781592 194 - 1.637 1.093 -1.897
ENSG00000112159 E105 25.1424592 0.0008111058 2.463383e-20 1.635754e-18 6 89785012 89785126 115 - 1.654 0.990 -2.330
ENSG00000112159 E106 24.1734969 0.0010173909 9.110093e-23 7.880729e-21 6 89787854 89787957 104 - 1.654 0.911 -2.626
ENSG00000112159 E107 22.1112296 0.0660132687 6.352494e-07 5.505017e-06 6 89789780 89789911 132 - 1.608 0.931 -2.390
ENSG00000112159 E108 30.7285423 0.2188416152 2.321759e-03 8.218888e-03 6 89790159 89790401 243 - 1.721 1.153 -1.963
ENSG00000112159 E109 26.9742483 0.1267189420 1.394111e-03 5.287701e-03 6 89793762 89793954 193 - 1.644 1.158 -1.683
ENSG00000112159 E110 16.5300047 0.0247746152 1.262486e-05 8.195952e-05 6 89794100 89794207 108 - 1.433 0.976 -1.623
ENSG00000112159 E111 27.1831030 0.0007210705 1.383553e-18 7.482443e-17 6 89794577 89794801 225 - 1.672 1.080 -2.060
ENSG00000112159 E112 24.2347910 0.0007763540 3.329433e-19 1.940772e-17 6 89803328 89803554 227 - 1.638 0.990 -2.276
ENSG00000112159 E113 10.6479491 0.0016096715 1.279578e-07 1.273374e-06 6 89819506 89819921 416 - 1.270 0.744 -1.956
ENSG00000112159 E114 0.4460135 0.0243386439 7.189175e-02 1.464834e-01 6 89827928 89828021 94 - 0.297 0.000 -16.406
ENSG00000112159 E115 0.4439371 0.0215761988 7.112695e-02 1.452118e-01 6 89829573 89829612 40 - 0.297 0.000 -16.440