ENSG00000111596

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000229195 ENSG00000111596 HEK293_OSMI2_2hA HEK293_TMG_2hB CNOT2 protein_coding protein_coding 24.91559 14.48964 35.30689 1.118768 0.3460303 1.284341 15.1173414 8.5775088 21.61139736 0.69381651 0.52818028 1.332148 0.62497083 0.59753333 0.6119333333 0.01440000 0.96793404 1.134606e-07 FALSE  
ENST00000547321 ENSG00000111596 HEK293_OSMI2_2hA HEK293_TMG_2hB CNOT2 protein_coding retained_intron 24.91559 14.48964 35.30689 1.118768 0.3460303 1.284341 1.0786547 0.0000000 1.93494184 0.00000000 1.08058356 7.603583 0.02839583 0.00000000 0.0552333333 0.05523333 0.28792679 1.134606e-07 FALSE  
ENST00000549709 ENSG00000111596 HEK293_OSMI2_2hA HEK293_TMG_2hB CNOT2 protein_coding nonsense_mediated_decay 24.91559 14.48964 35.30689 1.118768 0.3460303 1.284341 0.6685512 1.9027816 0.26496339 1.38399366 0.15147930 -2.798361 0.04204167 0.11976667 0.0076000000 -0.11216667 0.55169413 1.134606e-07    
ENST00000550160 ENSG00000111596 HEK293_OSMI2_2hA HEK293_TMG_2hB CNOT2 protein_coding protein_coding 24.91559 14.48964 35.30689 1.118768 0.3460303 1.284341 2.6278566 0.7565359 3.67557879 0.09023207 0.60005932 2.265466 0.09032083 0.05193333 0.1039333333 0.05200000 0.04724487 1.134606e-07 FALSE  
ENST00000551434 ENSG00000111596 HEK293_OSMI2_2hA HEK293_TMG_2hB CNOT2 protein_coding retained_intron 24.91559 14.48964 35.30689 1.118768 0.3460303 1.284341 0.2349160 1.0307766 0.02983884 1.03077659 0.02983884 -4.707341 0.01925000 0.07603333 0.0008333333 -0.07520000 0.87231381 1.134606e-07 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000111596 E001 1.2210941 0.0106348215 2.517250e-01 3.879894e-01 12 70243002 70243029 28 + 0.386 0.181 -1.464
ENSG00000111596 E002 1.2210941 0.0106348215 2.517250e-01 3.879894e-01 12 70243030 70243036 7 + 0.386 0.181 -1.464
ENSG00000111596 E003 2.8348147 0.1434231710 9.941548e-01 1.000000e+00 12 70243037 70243120 84 + 0.538 0.567 0.134
ENSG00000111596 E004 2.3113828 0.1119700426 6.262878e-01 7.422573e-01 12 70243121 70243189 69 + 0.452 0.560 0.523
ENSG00000111596 E005 1.8758647 0.0133728394 2.819379e-01 4.218914e-01 12 70243190 70243237 48 + 0.347 0.556 1.083
ENSG00000111596 E006 3.4344174 0.1363763334 4.962295e-01 6.329222e-01 12 70243238 70243332 95 + 0.538 0.726 0.816
ENSG00000111596 E007 2.2133404 0.0067928892 4.845362e-01 6.225075e-01 12 70243333 70243409 77 + 0.512 0.408 -0.531
ENSG00000111596 E008 1.3213160 0.1055757719 4.006366e-02 9.114746e-02 12 70243410 70243411 2 + 0.453 0.000 -14.815
ENSG00000111596 E009 1.4728315 0.0656430874 2.303831e-02 5.782715e-02 12 70243412 70243420 9 + 0.483 0.000 -15.034
ENSG00000111596 E010 1.4728315 0.0656430874 2.303831e-02 5.782715e-02 12 70243421 70243423 3 + 0.483 0.000 -15.034
ENSG00000111596 E011 1.4728315 0.0656430874 2.303831e-02 5.782715e-02 12 70243424 70243424 1 + 0.483 0.000 -15.034
ENSG00000111596 E012 1.6243469 0.0499559700 1.478608e-02 4.001155e-02 12 70243425 70243425 1 + 0.511 0.000 -15.188
ENSG00000111596 E013 2.0788932 0.0918751746 8.588424e-03 2.526006e-02 12 70243426 70243432 7 + 0.587 0.000 -15.429
ENSG00000111596 E014 2.2345612 0.0220057556 2.816286e-03 9.722236e-03 12 70243433 70243435 3 + 0.609 0.000 -15.627
ENSG00000111596 E015 2.3818103 0.0088073439 1.611902e-03 5.999004e-03 12 70243436 70243437 2 + 0.630 0.000 -15.712
ENSG00000111596 E016 9.5516389 0.0017926503 3.602304e-08 3.992779e-07 12 70243438 70243441 4 + 1.136 0.309 -3.611
ENSG00000111596 E017 13.2589284 0.0057994236 5.984663e-08 6.347067e-07 12 70243442 70243442 1 + 1.254 0.556 -2.710
ENSG00000111596 E018 17.9176036 0.2798101735 1.765826e-02 4.640069e-02 12 70243443 70243444 2 + 1.360 0.835 -1.909
ENSG00000111596 E019 19.6816077 0.1608778756 1.684839e-02 4.459548e-02 12 70243445 70243447 3 + 1.386 0.951 -1.559
ENSG00000111596 E020 21.1605664 0.0723590907 3.874579e-03 1.279128e-02 12 70243448 70243448 1 + 1.415 0.994 -1.495
ENSG00000111596 E021 71.6687152 0.0003540240 2.182829e-07 2.077311e-06 12 70243449 70243480 32 + 1.893 1.678 -0.728
ENSG00000111596 E022 0.0000000       12 70243714 70243747 34 +      
ENSG00000111596 E023 0.0000000       12 70243748 70243750 3 +      
ENSG00000111596 E024 1.7810591 0.0079383826 7.109267e-02 1.451528e-01 12 70243751 70244189 439 + 0.512 0.181 -2.117
ENSG00000111596 E025 0.4418608 0.0260003804 3.234192e-01 4.667540e-01 12 70244190 70244322 133 + 0.208 0.000 -13.455
ENSG00000111596 E026 140.8330556 0.0002483062 3.466935e-05 2.029277e-04 12 70278132 70278274 143 + 2.155 2.051 -0.348
ENSG00000111596 E027 0.6717251 0.0273507101 8.516203e-01 9.079889e-01 12 70278275 70278450 176 + 0.208 0.182 -0.240
ENSG00000111596 E028 2.2423965 0.0070376121 6.401171e-01 7.534135e-01 12 70285400 70285586 187 + 0.453 0.555 0.496
ENSG00000111596 E029 0.0000000       12 70290727 70290803 77 +      
ENSG00000111596 E030 3.2055137 0.0047745830 2.648183e-01 4.028134e-01 12 70294071 70294236 166 + 0.651 0.488 -0.745
ENSG00000111596 E031 4.1621719 0.0040815752 3.797616e-01 5.240154e-01 12 70294237 70294294 58 + 0.723 0.614 -0.464
ENSG00000111596 E032 2.7334588 0.0057665924 3.044963e-02 7.284252e-02 12 70297759 70297879 121 + 0.386 0.753 1.707
ENSG00000111596 E033 5.6789063 0.0029280361 9.260382e-01 9.574274e-01 12 70301705 70301865 161 + 0.786 0.826 0.159
ENSG00000111596 E034 1.1080838 0.1921858873 1.724573e-02 4.549146e-02 12 70307698 70307901 204 + 0.081 0.604 3.886
ENSG00000111596 E035 105.6579570 0.0024509626 6.054324e-03 1.875304e-02 12 70310895 70310962 68 + 2.028 1.939 -0.298
ENSG00000111596 E036 105.4188944 0.0040439307 1.342844e-01 2.401088e-01 12 70310963 70311017 55 + 2.013 1.973 -0.132
ENSG00000111596 E037 0.2214452 0.0440323046 2.030501e-01   12 70319024 70319297 274 + 0.000 0.182 13.230
ENSG00000111596 E038 113.5943125 0.0003081246 6.715388e-03 2.048252e-02 12 70319298 70319364 67 + 2.054 1.988 -0.219
ENSG00000111596 E039 0.7300161 0.0657722142 1.373841e-01 2.444333e-01 12 70327507 70327700 194 + 0.305 0.000 -14.095
ENSG00000111596 E040 0.1451727 0.0434653782 1.000000e+00   12 70327701 70327715 15 + 0.081 0.000 -11.879
ENSG00000111596 E041 146.6311859 0.0002316433 3.883592e-04 1.729798e-03 12 70329423 70329570 148 + 2.168 2.087 -0.269
ENSG00000111596 E042 0.5996172 0.3235073599 5.149971e-01 6.497226e-01 12 70329571 70329633 63 + 0.149 0.302 1.292
ENSG00000111596 E043 140.7148729 0.0002541762 4.818919e-02 1.059690e-01 12 70330287 70330469 183 + 2.136 2.105 -0.102
ENSG00000111596 E044 17.7992984 0.0175210444 2.061217e-01 3.338378e-01 12 70330470 70331698 1229 + 1.283 1.186 -0.340
ENSG00000111596 E045 4.2931665 0.0036282581 2.656512e-04 1.239821e-03 12 70332398 70332766 369 + 0.827 0.181 -3.465
ENSG00000111596 E046 59.4556941 0.0091694381 6.989062e-01 7.987505e-01 12 70332767 70332790 24 + 1.754 1.769 0.049
ENSG00000111596 E047 81.1887540 0.0003301964 1.871613e-01 3.101786e-01 12 70332791 70332846 56 + 1.896 1.873 -0.077
ENSG00000111596 E048 5.6083017 0.0455005479 1.929242e-02 4.996913e-02 12 70334435 70335437 1003 + 0.890 0.487 -1.706
ENSG00000111596 E049 62.2568158 0.0003924738 5.033757e-01 6.393466e-01 12 70335438 70335438 1 + 1.771 1.771 0.001
ENSG00000111596 E050 136.8048145 0.0003592519 8.392720e-01 8.995669e-01 12 70335439 70335563 125 + 2.101 2.126 0.086
ENSG00000111596 E051 3.0666707 0.0049507522 3.227473e-01 4.660820e-01 12 70335564 70337388 1825 + 0.630 0.488 -0.657
ENSG00000111596 E052 115.4339391 0.0003027992 4.588471e-01 5.991023e-01 12 70337389 70337482 94 + 2.018 2.076 0.196
ENSG00000111596 E053 75.1860219 0.0004947620 4.615923e-01 6.015249e-01 12 70337483 70337513 31 + 1.854 1.854 0.000
ENSG00000111596 E054 0.9180632 0.0136968632 4.650762e-01 6.047836e-01 12 70337514 70337755 242 + 0.306 0.181 -0.979
ENSG00000111596 E055 1.8154999 0.0103388932 8.586870e-01 9.128314e-01 12 70337756 70337820 65 + 0.421 0.408 -0.070
ENSG00000111596 E056 0.7374030 0.0153787590 6.266368e-01 7.425420e-01 12 70337821 70338435 615 + 0.259 0.181 -0.658
ENSG00000111596 E057 0.0000000       12 70338436 70338442 7 +      
ENSG00000111596 E058 81.2043198 0.0037379564 8.825174e-01 9.287988e-01 12 70338443 70338473 31 + 1.879 1.902 0.076
ENSG00000111596 E059 119.6511991 0.0031770859 8.196130e-01 8.861010e-01 12 70338474 70338563 90 + 2.041 2.081 0.135
ENSG00000111596 E060 0.5483223 0.0218745372 1.912784e-01 3.153358e-01 12 70338564 70338568 5 + 0.081 0.309 2.346
ENSG00000111596 E061 135.0941484 0.0002257661 9.754173e-01 9.886548e-01 12 70338666 70338765 100 + 2.096 2.129 0.113
ENSG00000111596 E062 118.4458925 0.0003546512 2.020837e-01 3.288027e-01 12 70338766 70338822 57 + 2.053 2.041 -0.041
ENSG00000111596 E063 0.4804688 0.0211462295 8.963106e-01 9.377205e-01 12 70341990 70342106 117 + 0.149 0.181 0.343
ENSG00000111596 E064 80.1150512 0.0010923916 1.773697e-01 2.978254e-01 12 70342107 70342107 1 + 1.889 1.860 -0.096
ENSG00000111596 E065 79.8289722 0.0017942528 2.165256e-01 3.462181e-01 12 70342108 70342109 2 + 1.887 1.860 -0.088
ENSG00000111596 E066 136.3958332 0.0014881675 1.242524e-01 2.260530e-01 12 70342110 70342168 59 + 2.117 2.091 -0.085
ENSG00000111596 E067 0.2966881 0.0269886135 5.612215e-01   12 70342169 70342257 89 + 0.149 0.000 -12.886
ENSG00000111596 E068 98.3209856 0.0013115982 4.535480e-01 5.943001e-01 12 70342258 70342268 11 + 1.968 1.970 0.004
ENSG00000111596 E069 113.9964527 0.0003005077 4.094370e-01 5.530478e-01 12 70342269 70342307 39 + 2.031 2.035 0.011
ENSG00000111596 E070 2.0400682 0.0079769416 2.319060e-01 3.647280e-01 12 70342308 70342373 66 + 0.512 0.309 -1.116
ENSG00000111596 E071 2.0348834 0.0905559765 6.824656e-01 7.859018e-01 12 70343947 70344110 164 + 0.484 0.408 -0.392
ENSG00000111596 E072 3.1826971 0.0054532627 6.371676e-01 7.510969e-01 12 70344111 70344127 17 + 0.609 0.555 -0.241
ENSG00000111596 E073 144.9944459 0.0003078166 3.394869e-01 4.834099e-01 12 70344128 70344228 101 + 2.114 2.177 0.209
ENSG00000111596 E074 0.6685028 0.0165745991 4.040832e-01 5.477885e-01 12 70344229 70344239 11 + 0.149 0.309 1.343
ENSG00000111596 E075 4.0454895 0.0195080179 6.408282e-01 7.539996e-01 12 70344240 70346066 1827 + 0.651 0.752 0.419
ENSG00000111596 E076 144.3940823 0.0012246054 3.596266e-02 8.350719e-02 12 70346180 70346324 145 + 2.098 2.201 0.347
ENSG00000111596 E077 0.7480121 0.0950922444 6.501419e-01 7.612361e-01 12 70346325 70346626 302 + 0.260 0.181 -0.667
ENSG00000111596 E078 0.8211642 0.1329076741 6.837651e-01 7.868817e-01 12 70347594 70348045 452 + 0.260 0.183 -0.646
ENSG00000111596 E079 495.8583429 0.0052009129 1.010027e-18 5.576990e-17 12 70353829 70354993 1165 + 2.532 2.863 1.101