ENSG00000109971

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000227378 ENSG00000109971 HEK293_OSMI2_2hA HEK293_TMG_2hB HSPA8 protein_coding protein_coding 1206.87 960.6891 1814.3 223.3137 23.83628 0.9172643 591.4904 569.4754 734.6585 159.14737 43.44989 0.3674345 0.5049458 0.5814667 0.4044333 -0.1770333 0.0007859856 1.194785e-06 FALSE TRUE
ENST00000534624 ENSG00000109971 HEK293_OSMI2_2hA HEK293_TMG_2hB HSPA8 protein_coding protein_coding 1206.87 960.6891 1814.3 223.3137 23.83628 0.9172643 566.0925 358.9602 996.5486 56.55662 20.62828 1.4730905 0.4514958 0.3866000 0.5497333 0.1631333 0.0084792620 1.194785e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000109971 E001 8.364771 2.517709e-03 1.306650e-01 2.350816e-01 11 123057489 123057495 7 - 0.903 1.079 0.653
ENSG00000109971 E002 10.071733 1.890581e-03 5.684908e-01 6.951723e-01 11 123057496 123057496 1 - 1.025 1.094 0.252
ENSG00000109971 E003 17.508936 3.273830e-02 5.338591e-01 6.659775e-01 11 123057497 123057497 1 - 1.299 1.238 -0.215
ENSG00000109971 E004 7187.344063 1.737041e-03 1.829693e-06 1.435439e-05 11 123057498 123057700 203 - 3.808 3.907 0.330
ENSG00000109971 E005 8920.615834 2.406426e-03 7.929759e-07 6.731200e-06 11 123057701 123057778 78 - 3.892 4.010 0.394
ENSG00000109971 E006 8571.378215 1.475473e-03 6.313108e-10 9.727526e-09 11 123057779 123057828 50 - 3.876 3.992 0.385
ENSG00000109971 E007 9237.505085 1.325881e-03 8.255851e-11 1.477467e-09 11 123057829 123057878 50 - 3.910 4.023 0.375
ENSG00000109971 E008 8559.718013 9.740201e-04 7.261916e-12 1.545958e-10 11 123057879 123057919 41 - 3.883 3.985 0.340
ENSG00000109971 E009 19442.106974 1.060967e-03 4.071966e-04 1.802387e-03 11 123058252 123058484 233 - 4.265 4.311 0.154
ENSG00000109971 E010 59.882214 5.207064e-03 7.517368e-01 8.381131e-01 11 123058485 123058514 30 - 1.794 1.774 -0.066
ENSG00000109971 E011 81.336636 4.107091e-03 1.170382e-04 6.002275e-04 11 123058515 123058631 117 - 1.991 1.792 -0.672
ENSG00000109971 E012 13920.095396 3.434840e-04 5.961329e-01 7.181137e-01 11 123058632 123058766 135 - 4.143 4.140 -0.009
ENSG00000109971 E013 7059.427231 3.222155e-04 2.288087e-01 3.610340e-01 11 123058767 123058790 24 - 3.845 3.854 0.030
ENSG00000109971 E014 7434.401532 3.321376e-04 2.245461e-01 3.558845e-01 11 123058791 123058830 40 - 3.867 3.876 0.030
ENSG00000109971 E015 84.914286 2.527765e-03 5.632979e-13 1.438015e-11 11 123058831 123058908 78 - 2.052 1.702 -1.181
ENSG00000109971 E016 105.051294 3.027584e-04 1.725582e-18 9.232032e-17 11 123058909 123059058 150 - 2.138 1.816 -1.080
ENSG00000109971 E017 7752.682221 2.090983e-04 6.070937e-01 7.271492e-01 11 123059059 123059103 45 - 3.889 3.892 0.010
ENSG00000109971 E018 7588.907971 1.219075e-04 4.626143e-01 6.024754e-01 11 123059104 123059155 52 - 3.879 3.886 0.024
ENSG00000109971 E019 8176.589075 5.113264e-05 1.084985e-03 4.252641e-03 11 123059156 123059232 77 - 3.906 3.930 0.078
ENSG00000109971 E020 5449.905614 2.401736e-05 2.500221e-11 4.883086e-10 11 123059233 123059261 29 - 3.722 3.767 0.148
ENSG00000109971 E021 91.472736 1.368721e-02 2.479116e-03 8.701457e-03 11 123059262 123059334 73 - 2.048 1.819 -0.769
ENSG00000109971 E022 81.237276 4.189371e-03 9.857450e-14 2.803579e-12 11 123059335 123059472 138 - 2.047 1.641 -1.370
ENSG00000109971 E023 3958.761056 5.808144e-05 7.248237e-08 7.561435e-07 11 123059473 123059475 3 - 3.583 3.627 0.145
ENSG00000109971 E024 15783.260035 1.478280e-04 3.589408e-01 5.032831e-01 11 123059476 123059762 287 - 4.202 4.192 -0.032
ENSG00000109971 E025 6392.140852 4.872148e-04 7.245518e-01 8.180468e-01 11 123059763 123059813 51 - 3.810 3.798 -0.038
ENSG00000109971 E026 6346.494612 1.182658e-04 6.574410e-05 3.595976e-04 11 123059814 123059848 35 - 3.816 3.790 -0.086
ENSG00000109971 E027 8216.007453 1.585796e-04 2.858389e-06 2.149374e-05 11 123059849 123059964 116 - 3.931 3.895 -0.120
ENSG00000109971 E028 3624.684509 4.342407e-04 1.598864e-05 1.014095e-04 11 123059965 123059981 17 - 3.582 3.529 -0.177
ENSG00000109971 E029 5247.046161 5.173827e-04 1.985473e-01 3.243749e-01 11 123059982 123060028 47 - 3.729 3.707 -0.072
ENSG00000109971 E030 46.795120 1.548190e-02 4.766124e-04 2.070603e-03 11 123060029 123060115 87 - 1.783 1.477 -1.043
ENSG00000109971 E031 3346.970484 6.402954e-04 2.609333e-01 3.985281e-01 11 123060116 123060117 2 - 3.520 3.531 0.037
ENSG00000109971 E032 3776.336790 9.879749e-04 5.176827e-01 6.520190e-01 11 123060118 123060128 11 - 3.575 3.577 0.007
ENSG00000109971 E033 4164.476998 9.402216e-04 4.737278e-02 1.044935e-01 11 123060129 123060145 17 - 3.608 3.631 0.075
ENSG00000109971 E034 4500.338633 9.658142e-04 1.073338e-01 2.016068e-01 11 123060146 123060164 19 - 3.645 3.660 0.052
ENSG00000109971 E035 5610.791050 7.910821e-04 6.194683e-01 7.368637e-01 11 123060165 123060211 47 - 3.754 3.738 -0.053
ENSG00000109971 E036 5919.469868 1.081180e-03 1.523549e-01 2.648898e-01 11 123060212 123060268 57 - 3.784 3.752 -0.107
ENSG00000109971 E037 33.296124 7.053775e-04 6.779786e-02 1.397100e-01 11 123060269 123060426 158 - 1.584 1.483 -0.346
ENSG00000109971 E038 7.275973 2.250507e-03 7.432779e-04 3.054949e-03 11 123060588 123060592 5 - 1.056 0.630 -1.667
ENSG00000109971 E039 4442.813351 1.988009e-03 1.181966e-01 2.173451e-01 11 123060593 123060606 14 - 3.664 3.619 -0.148
ENSG00000109971 E040 6622.135668 1.972881e-03 1.975147e-03 7.149543e-03 11 123060607 123060675 69 - 3.851 3.771 -0.267
ENSG00000109971 E041 5885.381635 1.704387e-03 9.836228e-11 1.737153e-09 11 123060676 123060697 22 - 3.825 3.677 -0.492
ENSG00000109971 E042 5495.398679 1.962437e-03 3.558738e-09 4.761917e-08 11 123060698 123060704 7 - 3.794 3.650 -0.479
ENSG00000109971 E043 8577.931625 1.989651e-03 1.095195e-08 1.340319e-07 11 123060705 123060798 94 - 3.986 3.845 -0.468
ENSG00000109971 E044 30.552089 2.828657e-03 6.256080e-07 5.429206e-06 11 123060825 123061119 295 - 1.618 1.259 -1.238
ENSG00000109971 E045 10484.255998 1.968151e-03 1.277846e-09 1.856901e-08 11 123061120 123061258 139 - 4.075 3.928 -0.488
ENSG00000109971 E046 6447.091825 2.959644e-03 1.837845e-06 1.441238e-05 11 123061259 123061329 71 - 3.864 3.717 -0.487
ENSG00000109971 E047 19.670097 5.283138e-02 1.184489e-01 2.177162e-01 11 123061330 123061332 3 - 1.401 1.167 -0.821
ENSG00000109971 E048 10.229433 5.536400e-02 2.549059e-01 3.916876e-01 11 123061452 123061587 136 - 1.121 0.922 -0.731
ENSG00000109971 E049 6.943457 8.890958e-02 1.129736e-01 2.098840e-01 11 123061588 123061674 87 - 1.005 0.675 -1.287
ENSG00000109971 E050 7.016383 9.280501e-02 5.219352e-02 1.130615e-01 11 123061675 123061833 159 - 1.026 0.633 -1.544
ENSG00000109971 E051 6.931006 8.108772e-03 3.372253e-01 4.810934e-01 11 123061869 123061912 44 - 0.943 0.827 -0.444
ENSG00000109971 E052 7.707336 2.101877e-03 9.940787e-03 2.861259e-02 11 123061913 123062063 151 - 1.046 0.740 -1.170
ENSG00000109971 E053 4473.503812 3.076691e-03 7.460582e-07 6.369181e-06 11 123062064 123062312 249 - 3.709 3.553 -0.518
ENSG00000109971 E054 0.000000       11 123062313 123062346 34 -      
ENSG00000109971 E055 17.624004 1.110249e-02 2.627334e-01 4.005347e-01 11 123062347 123062749 403 - 1.316 1.215 -0.354
ENSG00000109971 E056 5.124250 3.545480e-02 6.895733e-01 7.914313e-01 11 123062750 123063230 481 - 0.753 0.803 0.197