ENSG00000108883

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000402521 ENSG00000108883 HEK293_OSMI2_2hA HEK293_TMG_2hB EFTUD2 protein_coding protein_coding 144.1891 210.6766 100.27 12.83595 1.572599 -1.071065 12.046780 23.37518 6.8309892 1.301635 1.966037 -1.7733177 0.07980417 0.11243333 0.068266667 -0.04416667 4.065690e-01 1.797864e-05 FALSE TRUE
ENST00000590124 ENSG00000108883 HEK293_OSMI2_2hA HEK293_TMG_2hB EFTUD2 protein_coding protein_coding 144.1891 210.6766 100.27 12.83595 1.572599 -1.071065 3.971624 12.12941 0.2230091 6.898875 0.135322 -5.7031680 0.01900000 0.05693333 0.002266667 -0.05466667 2.724474e-02 1.797864e-05 FALSE TRUE
ENST00000591382 ENSG00000108883 HEK293_OSMI2_2hA HEK293_TMG_2hB EFTUD2 protein_coding protein_coding 144.1891 210.6766 100.27 12.83595 1.572599 -1.071065 12.049196 29.81767 2.4331164 4.228549 1.022416 -3.6098566 0.06466250 0.14003333 0.024266667 -0.11576667 1.102708e-04 1.797864e-05 FALSE TRUE
ENST00000592576 ENSG00000108883 HEK293_OSMI2_2hA HEK293_TMG_2hB EFTUD2 protein_coding protein_coding 144.1891 210.6766 100.27 12.83595 1.572599 -1.071065 60.783250 99.12923 37.0302091 3.797994 1.480927 -1.4203638 0.41164167 0.47216667 0.369266667 -0.10290000 4.887134e-03 1.797864e-05 FALSE TRUE
MSTRG.14462.9 ENSG00000108883 HEK293_OSMI2_2hA HEK293_TMG_2hB EFTUD2 protein_coding   144.1891 210.6766 100.27 12.83595 1.572599 -1.071065 41.492149 33.75465 42.6542010 7.234202 1.881682 0.3375125 0.32055417 0.15970000 0.425266667 0.26556667 1.797864e-05 1.797864e-05 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000108883 E001 73.5834371 5.438739e-03 5.629020e-01 6.904507e-01 17 44849948 44850809 862 - 1.789 1.833 0.148
ENSG00000108883 E002 45.3719065 1.128715e-03 8.556445e-02 1.683134e-01 17 44850810 44850865 56 - 1.528 1.642 0.390
ENSG00000108883 E003 83.6067894 3.350251e-04 3.714311e-05 2.157489e-04 17 44850866 44850915 50 - 1.721 1.921 0.676
ENSG00000108883 E004 75.0187097 3.582701e-04 2.081337e-04 9.987665e-04 17 44850916 44850916 1 - 1.682 1.872 0.641
ENSG00000108883 E005 606.5523092 1.802792e-03 1.937461e-19 1.163379e-17 17 44850917 44851046 130 - 2.526 2.785 0.864
ENSG00000108883 E006 972.3879055 9.829263e-04 1.495875e-22 1.269664e-20 17 44851047 44851119 73 - 2.770 2.981 0.702
ENSG00000108883 E007 1583.3965071 2.108942e-03 1.221054e-18 6.668351e-17 17 44851120 44851256 137 - 2.967 3.194 0.756
ENSG00000108883 E008 1787.1230596 9.861579e-04 2.205651e-20 1.474952e-18 17 44851257 44851369 113 - 3.062 3.238 0.585
ENSG00000108883 E009 1679.6039130 1.474852e-03 8.782524e-11 1.565362e-09 17 44851710 44851817 108 - 3.060 3.204 0.482
ENSG00000108883 E010 1842.2861319 2.791077e-03 3.929887e-06 2.863151e-05 17 44852409 44852562 154 - 3.109 3.241 0.439
ENSG00000108883 E011 1104.3754008 1.226490e-03 2.871831e-10 4.688958e-09 17 44853296 44853390 95 - 2.881 3.021 0.467
ENSG00000108883 E012 1239.8290977 8.160795e-04 3.391630e-14 1.031961e-12 17 44853517 44853635 119 - 2.927 3.074 0.487
ENSG00000108883 E013 33.4256862 3.082891e-02 2.067722e-06 1.603388e-05 17 44853636 44854268 633 - 1.782 1.297 -1.663
ENSG00000108883 E014 1362.6680694 9.606509e-04 2.198015e-09 3.056649e-08 17 44854269 44854356 88 - 2.989 3.109 0.400
ENSG00000108883 E015 1619.9590247 5.856618e-04 1.371291e-05 8.823388e-05 17 44854556 44854682 127 - 3.099 3.175 0.250
ENSG00000108883 E016 1287.9111267 6.600090e-04 2.927680e-02 7.053888e-02 17 44854918 44854974 57 - 3.023 3.068 0.150
ENSG00000108883 E017 1104.3445551 8.857888e-04 7.385097e-01 8.283753e-01 17 44854975 44855004 30 - 2.979 2.993 0.048
ENSG00000108883 E018 1386.6122159 7.858477e-04 4.327652e-01 5.752278e-01 17 44857075 44857157 83 - 3.072 3.094 0.072
ENSG00000108883 E019 3.3860776 5.070962e-03 3.997878e-01 5.435174e-01 17 44857158 44857639 482 - 0.475 0.624 0.693
ENSG00000108883 E020 1391.1108583 4.118536e-04 1.688399e-01 2.866739e-01 17 44859080 44859181 102 - 3.069 3.097 0.094
ENSG00000108883 E021 4.2360853 3.991646e-03 8.973476e-01 9.384426e-01 17 44859182 44859649 468 - 0.696 0.685 -0.047
ENSG00000108883 E022 1494.1852581 4.346290e-04 2.737063e-01 4.127851e-01 17 44859905 44860045 141 - 3.126 3.119 -0.023
ENSG00000108883 E023 6.9914038 2.450737e-03 7.472445e-02 1.510935e-01 17 44860046 44860431 386 - 0.997 0.787 -0.800
ENSG00000108883 E024 834.6442648 1.368700e-04 3.259558e-02 7.699190e-02 17 44860432 44860453 22 - 2.885 2.864 -0.071
ENSG00000108883 E025 1179.5949106 2.167039e-04 1.500017e-02 4.048808e-02 17 44860454 44860543 90 - 3.035 3.012 -0.078
ENSG00000108883 E026 798.6396671 4.406751e-04 2.833934e-01 4.234874e-01 17 44862713 44862752 40 - 2.855 2.845 -0.033
ENSG00000108883 E027 619.0755047 1.148243e-04 9.264271e-01 9.576674e-01 17 44862753 44862759 7 - 2.733 2.741 0.026
ENSG00000108883 E028 783.4333784 1.015300e-03 6.141535e-02 1.290149e-01 17 44862760 44862789 30 - 2.863 2.831 -0.105
ENSG00000108883 E029 1215.4382371 4.421030e-04 2.163647e-02 5.492245e-02 17 44862790 44862906 117 - 3.050 3.023 -0.088
ENSG00000108883 E030 9.4846558 3.480363e-03 8.574321e-03 2.522483e-02 17 44862907 44863595 689 - 1.158 0.882 -1.016
ENSG00000108883 E031 1194.5681307 4.867454e-04 3.062769e-01 4.484319e-01 17 44863655 44863782 128 - 3.029 3.021 -0.026
ENSG00000108883 E032 3.0194597 5.676491e-03 2.594266e-01 3.968091e-01 17 44863783 44864062 280 - 0.396 0.601 1.008
ENSG00000108883 E033 722.8802499 6.719536e-04 3.290232e-02 7.760806e-02 17 44864930 44864969 40 - 2.829 2.795 -0.111
ENSG00000108883 E034 1006.6041625 7.892275e-04 5.412369e-01 6.722594e-01 17 44864970 44865065 96 - 2.951 2.947 -0.013
ENSG00000108883 E035 1.4091386 1.492448e-01 7.457864e-01 8.337331e-01 17 44865066 44865232 167 - 0.397 0.319 -0.463
ENSG00000108883 E036 0.2214452 4.667407e-02 1.000000e+00   17 44865242 44865268 27 - 0.000 0.084 9.357
ENSG00000108883 E037 952.2752774 5.702629e-04 3.234274e-01 4.667616e-01 17 44867807 44867897 91 - 2.931 2.922 -0.031
ENSG00000108883 E038 799.0416146 6.866197e-04 3.148795e-01 4.576327e-01 17 44868287 44868350 64 - 2.857 2.845 -0.038
ENSG00000108883 E039 3.8255634 1.290550e-01 2.111533e-01 3.398773e-01 17 44868351 44868381 31 - 0.809 0.587 -0.927
ENSG00000108883 E040 2.8314166 6.000765e-03 7.507597e-02 1.516558e-01 17 44868382 44868479 98 - 0.737 0.465 -1.216
ENSG00000108883 E041 1017.3364344 8.883717e-05 1.163923e-01 2.148134e-01 17 44872446 44872570 125 - 2.963 2.952 -0.036
ENSG00000108883 E042 11.3462840 1.671364e-03 2.112401e-07 2.015756e-06 17 44872571 44873167 597 - 1.349 0.857 -1.784
ENSG00000108883 E043 6.2880739 3.127072e-03 2.992169e-06 2.239304e-05 17 44875633 44875933 301 - 1.143 0.577 -2.214
ENSG00000108883 E044 425.7366675 1.511267e-04 5.332033e-01 6.654355e-01 17 44875934 44875938 5 - 2.580 2.577 -0.009
ENSG00000108883 E045 1151.7944417 1.439313e-03 1.688009e-01 2.866230e-01 17 44875939 44876088 150 - 3.023 3.001 -0.074
ENSG00000108883 E046 615.2523008 1.993390e-03 6.301677e-03 1.940562e-02 17 44876089 44876100 12 - 2.782 2.717 -0.217
ENSG00000108883 E047 4.7534031 9.205018e-03 9.760874e-02 1.868375e-01 17 44879516 44879555 40 - 0.872 0.645 -0.916
ENSG00000108883 E048 911.9181954 3.149759e-03 3.733408e-03 1.239241e-02 17 44879556 44879638 83 - 2.963 2.882 -0.267
ENSG00000108883 E049 2.6729051 1.263732e-01 4.043043e-01 5.480161e-01 17 44880477 44880553 77 - 0.651 0.488 -0.745
ENSG00000108883 E050 989.5089401 2.416390e-03 4.917092e-04 2.128721e-03 17 44880554 44880642 89 - 3.002 2.916 -0.285
ENSG00000108883 E051 494.3108991 2.780782e-03 3.578545e-05 2.086947e-04 17 44880643 44880644 2 - 2.725 2.604 -0.402
ENSG00000108883 E052 673.2391754 4.018474e-03 5.588236e-04 2.380488e-03 17 44881687 44881722 36 - 2.852 2.742 -0.367
ENSG00000108883 E053 0.0000000       17 44881723 44881843 121 -      
ENSG00000108883 E054 765.4183069 2.442865e-03 4.327054e-06 3.122728e-05 17 44883093 44883128 36 - 2.914 2.795 -0.396
ENSG00000108883 E055 572.7530796 2.134632e-03 1.367024e-05 8.798620e-05 17 44883129 44883139 11 - 2.783 2.672 -0.369
ENSG00000108883 E056 595.1883457 3.018705e-03 2.454298e-04 1.156270e-03 17 44883140 44883158 19 - 2.796 2.691 -0.349
ENSG00000108883 E057 0.6287620 1.672961e-02 3.980802e-01 5.418219e-01 17 44883556 44883648 93 - 0.299 0.154 -1.216
ENSG00000108883 E058 928.9950547 2.959804e-03 2.172834e-04 1.037915e-03 17 44883649 44883724 76 - 2.984 2.885 -0.330
ENSG00000108883 E059 675.3821757 2.236935e-03 1.414372e-04 7.097596e-04 17 44885256 44885286 31 - 2.844 2.748 -0.318
ENSG00000108883 E060 842.8811255 2.068320e-03 1.462575e-06 1.172666e-05 17 44885287 44885334 48 - 2.953 2.838 -0.383
ENSG00000108883 E061 1078.4935538 9.774857e-04 4.345621e-15 1.508364e-13 17 44886585 44886662 78 - 3.077 2.937 -0.466
ENSG00000108883 E062 1096.9684146 3.921307e-04 8.790986e-34 1.963946e-31 17 44886663 44886750 88 - 3.104 2.935 -0.560
ENSG00000108883 E063 0.7385489 5.199969e-02 1.434804e-03 5.422288e-03 17 44891834 44892329 496 - 0.541 0.000 -14.378
ENSG00000108883 E064 0.1817044 3.979531e-02 1.000000e+00   17 44894134 44894244 111 - 0.000 0.084 9.353
ENSG00000108883 E065 0.4772466 2.051517e-02 8.848956e-01 9.304230e-01 17 44894245 44894416 172 - 0.175 0.154 -0.216
ENSG00000108883 E066 954.3998857 3.665448e-04 4.384074e-36 1.148755e-33 17 44894417 44894525 109 - 3.051 2.871 -0.598
ENSG00000108883 E067 10.8499471 4.116137e-02 3.744249e-04 1.675216e-03 17 44895826 44895989 164 - 1.319 0.861 -1.664
ENSG00000108883 E068 2.4659446 2.181159e-02 3.506418e-02 8.177167e-02 17 44898975 44899041 67 - 0.737 0.396 -1.583
ENSG00000108883 E069 1.6389052 2.043322e-01 5.949375e-02 1.257577e-01 17 44899042 44899368 327 - 0.651 0.261 -2.081
ENSG00000108883 E070 550.3415597 9.635480e-04 7.218064e-17 3.159521e-15 17 44899369 44899651 283 - 2.808 2.634 -0.578