ENSG00000107959

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000224949 ENSG00000107959 HEK293_OSMI2_2hA HEK293_TMG_2hB PITRM1 protein_coding protein_coding 68.78392 83.85668 59.10943 4.494459 0.2582761 -0.5044654 53.469521 61.3132426 47.547990 3.3337417 0.510338 -0.3667462 0.78255833 0.7370333 0.80436667 0.06733333 0.7189150645 2.276958e-14 FALSE  
ENST00000430362 ENSG00000107959 HEK293_OSMI2_2hA HEK293_TMG_2hB PITRM1 protein_coding protein_coding 68.78392 83.85668 59.10943 4.494459 0.2582761 -0.5044654 1.623218 0.6590421 3.654451 0.1806515 1.123995 2.4534282 0.02538750 0.0077000 0.06196667 0.05426667 0.0000745078 2.276958e-14 FALSE  
ENST00000490510 ENSG00000107959 HEK293_OSMI2_2hA HEK293_TMG_2hB PITRM1 protein_coding processed_transcript 68.78392 83.85668 59.10943 4.494459 0.2582761 -0.5044654 3.295883 10.6592415 0.000000 5.4866731 0.000000 -10.0592419 0.03721667 0.1233333 0.00000000 -0.12333333 0.1706800750 2.276958e-14 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000107959 E001 0.8168978 0.0140576855 7.087836e-02 1.448042e-01 10 3137015 3137076 62 - 0.415 0.102 -2.590
ENSG00000107959 E002 1.0351338 0.0436482053 6.404522e-01 7.536888e-01 10 3137522 3137727 206 - 0.342 0.255 -0.587
ENSG00000107959 E003 3.7900704 0.0045579491 7.458332e-03 2.240706e-02 10 3137728 3137729 2 - 0.342 0.781 2.071
ENSG00000107959 E004 9.7149368 0.0017671942 1.413485e-06 1.136155e-05 10 3137730 3137733 4 - 0.531 1.154 2.467
ENSG00000107959 E005 11.7347517 0.0015152921 3.602697e-07 3.278982e-06 10 3137734 3137738 5 - 0.623 1.228 2.314
ENSG00000107959 E006 12.1034459 0.0014537171 8.016303e-07 6.794920e-06 10 3137739 3137739 1 - 0.662 1.235 2.169
ENSG00000107959 E007 13.3556714 0.0013485939 3.156430e-06 2.349704e-05 10 3137740 3137740 1 - 0.763 1.267 1.867
ENSG00000107959 E008 17.7976020 0.0010837434 7.658043e-03 2.292150e-02 10 3137741 3137743 3 - 1.100 1.330 0.816
ENSG00000107959 E009 26.4675530 0.0132595143 3.217043e-01 4.649513e-01 10 3137744 3137744 1 - 1.368 1.456 0.302
ENSG00000107959 E010 31.9604038 0.0013781209 9.471774e-02 1.824575e-01 10 3137745 3137745 1 - 1.431 1.540 0.373
ENSG00000107959 E011 48.4626691 0.0054854519 1.356027e-05 8.736745e-05 10 3137746 3137752 7 - 1.474 1.763 0.985
ENSG00000107959 E012 111.3908019 0.0079787450 7.871633e-07 6.686953e-06 10 3137753 3137788 36 - 1.830 2.117 0.964
ENSG00000107959 E013 471.2965398 0.0016093331 1.274120e-18 6.926204e-17 10 3137789 3137980 192 - 2.494 2.726 0.773
ENSG00000107959 E014 776.3040547 0.0047149025 9.587328e-08 9.767103e-07 10 3137981 3138124 144 - 2.741 2.930 0.629
ENSG00000107959 E015 11.9552214 0.0015610238 7.333961e-02 1.488677e-01 10 3138125 3138234 110 - 0.973 1.154 0.659
ENSG00000107959 E016 760.8755585 0.0032802638 1.317346e-08 1.588083e-07 10 3138235 3138337 103 - 2.744 2.917 0.575
ENSG00000107959 E017 19.7238989 0.0136928027 8.852874e-01 9.306467e-01 10 3138338 3138690 353 - 1.296 1.306 0.037
ENSG00000107959 E018 16.8610835 0.0010802058 1.993727e-01 3.254568e-01 10 3138691 3138903 213 - 1.164 1.273 0.386
ENSG00000107959 E019 863.0521253 0.0027096559 7.983417e-08 8.264217e-07 10 3138904 3139049 146 - 2.817 2.965 0.491
ENSG00000107959 E020 563.7152690 0.0010150910 9.348597e-10 1.393880e-08 10 3140687 3140765 79 - 2.644 2.776 0.439
ENSG00000107959 E021 484.3052513 0.0014165804 1.009030e-04 5.261125e-04 10 3140766 3140812 47 - 2.605 2.700 0.314
ENSG00000107959 E022 2.2969006 0.0063470586 9.796141e-03 2.826066e-02 10 3141457 3141507 51 - 0.732 0.314 -2.052
ENSG00000107959 E023 1.5584654 0.0116661105 2.087957e-01 3.370718e-01 10 3141508 3141519 12 - 0.531 0.314 -1.179
ENSG00000107959 E024 5.7708855 0.0028236943 8.539782e-04 3.451825e-03 10 3141520 3141737 218 - 1.041 0.621 -1.651
ENSG00000107959 E025 6.9128867 0.0298966531 1.475352e-04 7.364979e-04 10 3142517 3142869 353 - 1.140 0.596 -2.119
ENSG00000107959 E026 643.4280940 0.0005215379 3.629215e-11 6.887837e-10 10 3143389 3143482 94 - 2.712 2.831 0.395
ENSG00000107959 E027 333.7280729 0.0007440404 2.647806e-08 3.014174e-07 10 3143483 3143501 19 - 2.418 2.552 0.447
ENSG00000107959 E028 9.5120691 0.0017812085 1.513151e-02 4.078333e-02 10 3143502 3143605 104 - 1.152 0.897 -0.936
ENSG00000107959 E029 12.8079967 0.0016850957 9.362676e-04 3.741022e-03 10 3143606 3143731 126 - 1.296 0.989 -1.102
ENSG00000107959 E030 6.7262450 0.0166095597 1.086819e-02 3.085116e-02 10 3143732 3143775 44 - 1.056 0.720 -1.289
ENSG00000107959 E031 4.0651856 0.0039419729 3.988125e-04 1.769784e-03 10 3143827 3143970 144 - 0.954 0.455 -2.108
ENSG00000107959 E032 505.5628397 0.0016204542 1.251409e-06 1.018148e-05 10 3144292 3144366 75 - 2.605 2.728 0.409
ENSG00000107959 E033 535.2726781 0.0004620069 6.463413e-05 3.540989e-04 10 3145596 3145716 121 - 2.664 2.738 0.245
ENSG00000107959 E034 1.3599069 0.2846392613 6.597981e-01 7.685496e-01 10 3147148 3147149 2 - 0.255 0.382 0.820
ENSG00000107959 E035 220.2206847 0.0001939264 7.739888e-02 1.552964e-01 10 3147150 3147162 13 - 2.299 2.342 0.144
ENSG00000107959 E036 419.3027880 0.0002311560 2.364529e-03 8.351321e-03 10 3147163 3147250 88 - 2.570 2.626 0.189
ENSG00000107959 E037 533.4883246 0.0007363287 3.210656e-02 7.606346e-02 10 3147572 3147737 166 - 2.683 2.726 0.141
ENSG00000107959 E038 15.6033758 0.0363369873 2.227817e-07 2.116633e-06 10 3147738 3147986 249 - 1.508 0.861 -2.317
ENSG00000107959 E039 361.3713936 0.0035322911 4.973305e-01 6.338727e-01 10 3147987 3148063 77 - 2.527 2.551 0.080
ENSG00000107959 E040 7.0812668 0.0477461778 6.903184e-04 2.863810e-03 10 3148064 3148167 104 - 1.153 0.622 -2.052
ENSG00000107959 E041 11.3487390 0.0014913617 3.861887e-01 5.303768e-01 10 3148168 3148170 3 - 1.025 1.111 0.314
ENSG00000107959 E042 463.8646235 0.0005398570 2.667511e-01 4.049962e-01 10 3148171 3148291 121 - 2.637 2.658 0.070
ENSG00000107959 E043 24.0777821 0.0012084950 8.529218e-17 3.704344e-15 10 3148292 3149620 1329 - 1.668 1.065 -2.102
ENSG00000107959 E044 476.1754260 0.0008948425 5.927519e-01 7.152370e-01 10 3149621 3149753 133 - 2.670 2.656 -0.047
ENSG00000107959 E045 1.3222570 0.0103096806 5.728098e-01 6.988704e-01 10 3151176 3151176 1 - 0.415 0.314 -0.591
ENSG00000107959 E046 2.7520196 0.0061762697 4.741811e-01 6.130257e-01 10 3151177 3151201 25 - 0.477 0.593 0.547
ENSG00000107959 E047 7.6463789 0.0060815266 6.244020e-01 7.407153e-01 10 3151202 3151246 45 - 0.892 0.951 0.223
ENSG00000107959 E048 543.2599973 0.0001403996 5.621200e-01 6.897816e-01 10 3151247 3151363 117 - 2.714 2.722 0.026
ENSG00000107959 E049 554.3095237 0.0001068052 2.616939e-01 3.993678e-01 10 3155591 3155729 139 - 2.716 2.732 0.054
ENSG00000107959 E050 499.0862556 0.0017359683 9.618020e-01 9.799161e-01 10 3156930 3157064 135 - 2.681 2.679 -0.009
ENSG00000107959 E051 2.2947356 0.0072787641 1.230027e-01 2.242416e-01 10 3157065 3157434 370 - 0.662 0.413 -1.179
ENSG00000107959 E052 399.1004038 0.0049829798 5.954723e-02 1.258441e-01 10 3157435 3157531 97 - 2.631 2.553 -0.258
ENSG00000107959 E053 222.3117426 0.0047821324 6.266297e-02 1.311283e-01 10 3158040 3158044 5 - 2.380 2.300 -0.269
ENSG00000107959 E054 463.4722245 0.0029797083 3.650533e-03 1.215627e-02 10 3158045 3158153 109 - 2.706 2.612 -0.313
ENSG00000107959 E055 585.8981650 0.0006477401 1.010847e-12 2.479953e-11 10 3158914 3159042 129 - 2.833 2.696 -0.457
ENSG00000107959 E056 452.2836425 0.0004377363 1.339057e-10 2.315658e-09 10 3159848 3159936 89 - 2.716 2.590 -0.418
ENSG00000107959 E057 0.2966881 0.0271894416 1.129917e-01   10 3159937 3160001 65 - 0.255 0.000 -11.157
ENSG00000107959 E058 489.4755688 0.0017813977 1.073675e-06 8.852915e-06 10 3160204 3160330 127 - 2.750 2.621 -0.431
ENSG00000107959 E059 7.0815343 0.0044023295 8.046217e-01 8.756819e-01 10 3162235 3163248 1014 - 0.913 0.882 -0.119
ENSG00000107959 E060 6.7356065 0.0026541407 5.761842e-02 1.225388e-01 10 3163249 3163724 476 - 1.008 0.781 -0.868
ENSG00000107959 E061 469.4394246 0.0035012690 1.907916e-05 1.189134e-04 10 3163725 3163881 157 - 2.740 2.596 -0.481
ENSG00000107959 E062 195.3838678 0.0133753583 2.248911e-03 7.995225e-03 10 3163882 3163885 4 - 2.386 2.195 -0.638
ENSG00000107959 E063 0.2966881 0.0271894416 1.129917e-01   10 3163886 3164010 125 - 0.255 0.000 -11.157
ENSG00000107959 E064 347.0964522 0.0076824291 1.295748e-04 6.569313e-04 10 3165238 3165330 93 - 2.630 2.448 -0.605
ENSG00000107959 E065 174.6203828 0.0025108129 3.619027e-08 4.010141e-07 10 3165331 3165334 4 - 2.344 2.141 -0.678
ENSG00000107959 E066 296.7235611 0.0033480872 9.170327e-07 7.673547e-06 10 3165413 3165483 71 - 2.558 2.384 -0.581
ENSG00000107959 E067 248.1077732 0.0021199444 5.294739e-06 3.746582e-05 10 3165484 3165523 40 - 2.466 2.319 -0.490
ENSG00000107959 E068 172.3147358 0.0012689823 1.773693e-06 1.395320e-05 10 3165524 3165527 4 - 2.313 2.158 -0.517
ENSG00000107959 E069 482.9175970 0.0025398263 2.007310e-10 3.362919e-09 10 3166229 3166380 152 - 2.777 2.589 -0.626
ENSG00000107959 E070 274.1408360 0.0027933271 2.926127e-08 3.300071e-07 10 3166936 3166977 42 - 2.532 2.343 -0.629
ENSG00000107959 E071 314.2017189 0.0053076622 2.854861e-06 2.146977e-05 10 3166978 3167042 65 - 2.594 2.401 -0.643
ENSG00000107959 E072 1.3211111 0.0098221594 8.876643e-01 9.321963e-01 10 3167667 3170103 2437 - 0.342 0.366 0.145
ENSG00000107959 E073 302.7340394 0.0057705996 1.905122e-06 1.489188e-05 10 3170104 3170206 103 - 2.583 2.379 -0.679
ENSG00000107959 E074 2.7709224 0.0067705031 9.170543e-01 9.515977e-01 10 3170734 3170777 44 - 0.579 0.562 -0.078
ENSG00000107959 E075 4.1225291 0.0059969223 1.093941e-02 3.101617e-02 10 3170778 3170953 176 - 0.892 0.530 -1.509
ENSG00000107959 E076 1.1404639 0.0168125313 5.396841e-01 6.709246e-01 10 3171761 3172181 421 - 0.255 0.366 0.728
ENSG00000107959 E077 1.3747996 0.2161793675 2.021865e-02 5.194276e-02 10 3172182 3172716 535 - 0.624 0.102 -3.592
ENSG00000107959 E078 153.2079625 0.0073877216 6.900380e-05 3.752279e-04 10 3172717 3172841 125 - 2.289 2.083 -0.686