ENSG00000107890

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000376087 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding protein_coding 3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 1.14042276 0.24757066 1.73286106 0.07595339 0.142610025 2.758417 0.28682083 0.20620000 0.356266667 0.15006667 3.309257e-01 6.524578e-05 FALSE TRUE
ENST00000436985 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding protein_coding 3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 0.68046729 0.00000000 0.37216697 0.00000000 0.372166967 5.256131 0.12117083 0.00000000 0.079366667 0.07936667 1.000000e+00 6.524578e-05 FALSE TRUE
ENST00000445828 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding protein_coding 3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 0.15843726 0.27209697 0.04120099 0.19404228 0.041200993 -2.461947 0.05963333 0.16023333 0.007966667 -0.15226667 2.105739e-01 6.524578e-05 FALSE TRUE
ENST00000675116 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding nonsense_mediated_decay 3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 0.07114894 0.09411636 0.00000000 0.06428505 0.000000000 -3.380125 0.03117500 0.09466667 0.000000000 -0.09466667 8.179738e-02 6.524578e-05 TRUE TRUE
ENST00000675349 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding processed_transcript 3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 0.25813881 0.06864177 0.49980933 0.04226352 0.037437571 2.696590 0.06198333 0.04906667 0.102066667 0.05300000 2.638077e-01 6.524578e-05 FALSE TRUE
ENST00000675936 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding nonsense_mediated_decay 3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 0.19368783 0.19817303 0.06608223 0.09981244 0.066082234 -1.452152 0.09516667 0.12450000 0.013766667 -0.11073333 2.714950e-01 6.524578e-05 TRUE TRUE
ENST00000676280 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding protein_coding 3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 0.14140661 0.31328215 0.06059764 0.18389344 0.005980745 -2.195102 0.09231667 0.22716667 0.012366667 -0.21480000 5.700550e-03 6.524578e-05 FALSE TRUE
MSTRG.3688.4 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding   3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 0.15817553 0.00000000 0.94910816 0.00000000 0.217756102 6.583622 0.04575417 0.00000000 0.193400000 0.19340000 6.524578e-05 6.524578e-05 TRUE TRUE
MSTRG.3688.7 ENSG00000107890 HEK293_OSMI2_2hA HEK293_TMG_2hB ANKRD26 protein_coding   3.552748 1.372186 4.88673 0.254855 0.1453723 1.824867 0.38957486 0.04570406 0.78738634 0.03725571 0.398941192 3.839425 0.10121250 0.04776667 0.157600000 0.10983333 7.454666e-01 6.524578e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000107890 E001 0.1515154 0.0430036970 8.732297e-01   10 26973793 26973871 79 - 0.051 0.000 -6.956
ENSG00000107890 E002 3.4947081 0.0044653769 2.851931e-05 1.705299e-04 10 26973872 26976007 2136 - 0.351 1.016 2.918
ENSG00000107890 E003 0.7332358 0.3886285638 1.548057e-01 2.681491e-01 10 26976008 26976042 35 - 0.096 0.445 2.852
ENSG00000107890 E004 0.5117906 0.1652715785 3.633919e-01 5.078003e-01 10 26980576 26980618 43 - 0.096 0.270 1.799
ENSG00000107890 E005 1.5039363 0.1049569957 1.672133e-01 2.845803e-01 10 26980619 26980726 108 - 0.242 0.556 1.804
ENSG00000107890 E006 1.6919834 0.0384852312 4.812898e-02 1.058583e-01 10 26980727 26980839 113 - 0.242 0.647 2.204
ENSG00000107890 E007 1.1791475 0.0272027970 8.198175e-03 2.428609e-02 10 26982054 26982162 109 - 0.137 0.645 3.196
ENSG00000107890 E008 2.8669808 0.0058526405 1.175379e-01 2.164196e-01 10 26982693 26982813 121 - 0.417 0.722 1.403
ENSG00000107890 E009 1.2533437 0.0273606846 6.523611e-04 2.724120e-03 10 26991914 26992005 92 - 0.096 0.722 4.106
ENSG00000107890 E010 1.4319302 0.0093065662 4.848786e-01 6.228179e-01 10 26992263 26992404 142 - 0.272 0.432 0.974
ENSG00000107890 E011 0.9869609 0.0943037004 4.208712e-02 9.488949e-02 10 26995041 26995147 107 - 0.137 0.552 2.786
ENSG00000107890 E012 2.3218041 0.0074523554 1.223464e-02 3.409806e-02 10 27004116 27004184 69 - 0.326 0.786 2.193
ENSG00000107890 E013 35.7177721 0.1457498755 2.124624e-02 5.410433e-02 10 27004185 27005266 1082 - 1.304 1.802 1.704
ENSG00000107890 E014 7.3244699 0.0049549052 2.718859e-02 6.637539e-02 10 27005267 27005314 48 - 0.718 1.051 1.279
ENSG00000107890 E015 12.3304271 0.0015911523 5.541621e-07 4.861512e-06 10 27005315 27005616 302 - 0.850 1.396 1.973
ENSG00000107890 E016 4.1214981 0.0040534161 2.488989e-02 6.164698e-02 10 27005617 27005622 6 - 0.510 0.893 1.611
ENSG00000107890 E017 10.3475807 0.0017666960 3.520829e-05 2.057151e-04 10 27005623 27005723 101 - 0.802 1.296 1.814
ENSG00000107890 E018 11.7857162 0.0191598257 3.302771e-03 1.115688e-02 10 27006917 27006962 46 - 0.886 1.277 1.421
ENSG00000107890 E019 25.8469197 0.0007865838 9.920947e-05 5.181379e-04 10 27012882 27013110 229 - 1.215 1.556 1.184
ENSG00000107890 E020 24.6649153 0.0027744834 9.851240e-04 3.908129e-03 10 27014494 27014711 218 - 1.201 1.513 1.085
ENSG00000107890 E021 28.9402115 0.0006832250 5.322961e-03 1.681231e-02 10 27017502 27017792 291 - 1.285 1.535 0.866
ENSG00000107890 E022 15.6862887 0.0160233055 3.809984e-02 8.754065e-02 10 27022558 27022687 130 - 1.028 1.299 0.965
ENSG00000107890 E023 19.0000107 0.0052713757 7.621333e-01 8.458093e-01 10 27024447 27024559 113 - 1.151 1.214 0.224
ENSG00000107890 E024 18.1750236 0.0009933096 1.446045e-01 2.542944e-01 10 27028852 27028945 94 - 1.159 1.016 -0.515
ENSG00000107890 E025 15.5113016 0.0011020842 2.437553e-01 3.785925e-01 10 27029286 27029356 71 - 1.094 0.979 -0.421
ENSG00000107890 E026 0.1482932 0.0453681938 5.605474e-02   10 27030393 27030600 208 - 0.000 0.267 12.426
ENSG00000107890 E027 19.3227647 0.0009260300 2.379414e-01 3.717427e-01 10 27033225 27033377 153 - 1.184 1.082 -0.365
ENSG00000107890 E028 15.3560468 0.0367830624 9.520779e-01 9.740099e-01 10 27034796 27034906 111 - 1.076 1.109 0.116
ENSG00000107890 E029 67.2038901 0.0006357244 2.014392e-01 3.279795e-01 10 27034907 27035672 766 - 1.693 1.649 -0.150
ENSG00000107890 E030 10.6155100 0.0075760526 6.370540e-01 7.510001e-01 10 27035673 27035677 5 - 0.933 0.894 -0.147
ENSG00000107890 E031 17.3782442 0.0115916236 3.697380e-01 5.141387e-01 10 27035678 27035752 75 - 1.135 1.052 -0.300
ENSG00000107890 E032 18.9084844 0.0062861945 3.175505e-01 4.604451e-01 10 27037186 27037323 138 - 1.170 1.083 -0.310
ENSG00000107890 E033 0.0000000       10 27037664 27037782 119 -      
ENSG00000107890 E034 16.9506927 0.0010648298 3.974767e-01 5.412376e-01 10 27037871 27037995 125 - 1.120 1.051 -0.249
ENSG00000107890 E035 12.3116500 0.0016858608 3.114930e-01 4.539514e-01 10 27037996 27038054 59 - 1.003 0.893 -0.409
ENSG00000107890 E036 11.2170804 0.0015311041 6.127762e-02 1.287890e-01 10 27039965 27039987 23 - 0.981 0.721 -1.006
ENSG00000107890 E037 17.9555133 0.0014903498 1.654180e-01 2.822410e-01 10 27039988 27040097 110 - 1.151 1.017 -0.487
ENSG00000107890 E038 13.9063982 0.0114100377 3.239343e-01 4.672769e-01 10 27040098 27040178 81 - 1.044 0.941 -0.382
ENSG00000107890 E039 15.5368723 0.0013499078 4.155553e-01 5.589352e-01 10 27043426 27043567 142 - 1.086 1.016 -0.252
ENSG00000107890 E040 10.9704431 0.0223695339 2.114750e-01 3.402318e-01 10 27044157 27044190 34 - 0.964 0.788 -0.675
ENSG00000107890 E041 0.5858876 0.0213620187 5.199144e-01 6.539690e-01 10 27046111 27046352 242 - 0.137 0.268 1.194
ENSG00000107890 E042 21.1815715 0.0017681572 6.728732e-02 1.388407e-01 10 27046353 27046520 168 - 1.228 1.051 -0.635
ENSG00000107890 E043 5.3929342 0.0029795999 3.291967e-01 4.727047e-01 10 27046521 27046523 3 - 0.707 0.551 -0.680
ENSG00000107890 E044 22.6248163 0.0008477381 3.163065e-02 7.513332e-02 10 27048801 27048979 179 - 1.259 1.051 -0.744
ENSG00000107890 E045 8.2340942 0.0020279795 3.301100e-01 4.737035e-01 10 27051059 27052425 1367 - 0.850 0.721 -0.512
ENSG00000107890 E046 16.5872255 0.0010800037 3.595873e-02 8.350217e-02 10 27053320 27053390 71 - 1.136 0.893 -0.892
ENSG00000107890 E047 16.8065970 0.0010884130 4.331990e-03 1.407496e-02 10 27060345 27060414 70 - 1.151 0.787 -1.363
ENSG00000107890 E048 8.5932155 0.0019235132 1.206073e-03 4.661002e-03 10 27060415 27060417 3 - 0.907 0.268 -3.053
ENSG00000107890 E049 8.8940562 0.0018830608 9.115172e-04 3.654228e-03 10 27060512 27060540 29 - 0.920 0.268 -3.103
ENSG00000107890 E050 0.1472490 0.0434309522 8.729326e-01   10 27060818 27060881 64 - 0.051 0.000 -9.455
ENSG00000107890 E051 13.1550672 0.0013109953 1.761466e-02 4.630217e-02 10 27061144 27061229 86 - 1.049 0.721 -1.255
ENSG00000107890 E052 7.2064464 0.0023915739 2.820330e-01 4.219903e-01 10 27061230 27061242 13 - 0.802 0.645 -0.646
ENSG00000107890 E053 0.5997190 0.1659955759 8.038718e-01 8.752061e-01 10 27063036 27063987 952 - 0.175 0.000 -11.040
ENSG00000107890 E054 13.4745548 0.0013657616 1.945045e-01 3.194006e-01 10 27063988 27064081 94 - 1.039 0.894 -0.541
ENSG00000107890 E055 0.0000000       10 27066241 27066486 246 -      
ENSG00000107890 E056 9.7179450 0.0172527685 5.832039e-01 7.073650e-01 10 27066487 27066548 62 - 0.900 0.846 -0.209
ENSG00000107890 E057 13.0225800 0.0013948255 1.945786e-02 5.032743e-02 10 27067157 27067286 130 - 1.044 0.721 -1.238
ENSG00000107890 E058 0.0000000       10 27077023 27077337 315 -      
ENSG00000107890 E059 21.1354910 0.0077294379 1.028773e-04 5.353310e-04 10 27077338 27077540 203 - 1.253 0.722 -1.984
ENSG00000107890 E060 13.0254755 0.0069120598 1.645345e-03 6.106248e-03 10 27077633 27077693 61 - 1.058 0.551 -2.027
ENSG00000107890 E061 12.9684587 0.0032075217 2.331129e-04 1.104560e-03 10 27079089 27079161 73 - 1.063 0.432 -2.630
ENSG00000107890 E062 0.2987644 0.0274307615 1.000000e+00   10 27080032 27080153 122 - 0.096 0.000 -10.413
ENSG00000107890 E063 0.1515154 0.0430036970 8.732297e-01   10 27080649 27080771 123 - 0.051 0.000 -9.457
ENSG00000107890 E064 8.4740436 0.1491149034 2.588376e-01 3.961652e-01 10 27082803 27082833 31 - 0.874 0.647 -0.919
ENSG00000107890 E065 9.2093677 0.0511352907 9.917881e-01 9.989541e-01 10 27086539 27086609 71 - 0.874 0.895 0.080
ENSG00000107890 E066 10.2663510 0.0305526896 3.008402e-01 4.426043e-01 10 27092406 27092512 107 - 0.940 0.786 -0.592
ENSG00000107890 E067 14.8824404 0.0011524511 3.961088e-02 9.031149e-02 10 27093349 27093522 174 - 1.094 0.843 -0.936
ENSG00000107890 E068 11.4998510 0.0044208700 4.968397e-02 1.085976e-01 10 27093685 27093799 115 - 0.997 0.721 -1.068
ENSG00000107890 E069 0.1515154 0.0430036970 8.732297e-01   10 27098180 27098326 147 - 0.051 0.000 -9.457
ENSG00000107890 E070 13.2457748 0.0106661992 2.136446e-02 5.435713e-02 10 27100085 27100494 410 - 1.053 0.722 -1.272