ENSG00000107736

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000299366 ENSG00000107736 HEK293_OSMI2_2hA HEK293_TMG_2hB CDH23 protein_coding protein_coding 4.374644 7.638594 2.787246 0.2075074 0.1718508 -1.451187 1.3437933 2.20694564 0.7331109 0.20413360 0.12580840 -1.5769239 0.3052917 0.28986667 0.26926667 -0.0206000 9.337701e-01 4.958487e-10 FALSE TRUE
ENST00000461841 ENSG00000107736 HEK293_OSMI2_2hA HEK293_TMG_2hB CDH23 protein_coding protein_coding 4.374644 7.638594 2.787246 0.2075074 0.1718508 -1.451187 1.1304856 2.05749610 1.1158443 0.32116246 0.05761945 -0.8768773 0.2630500 0.27203333 0.40250000 0.1304667 2.355051e-01 4.958487e-10 FALSE TRUE
ENST00000470494 ENSG00000107736 HEK293_OSMI2_2hA HEK293_TMG_2hB CDH23 protein_coding protein_coding 4.374644 7.638594 2.787246 0.2075074 0.1718508 -1.451187 0.7867394 1.41187912 0.3546970 0.73998710 0.19547327 -1.9630284 0.1530833 0.18036667 0.12006667 -0.0603000 9.544664e-01 4.958487e-10 FALSE TRUE
ENST00000646131 ENSG00000107736 HEK293_OSMI2_2hA HEK293_TMG_2hB CDH23 protein_coding protein_coding 4.374644 7.638594 2.787246 0.2075074 0.1718508 -1.451187 0.1340559 0.09161325 0.2355821 0.09161325 0.17382461 1.2731167 0.0268375 0.01266667 0.08236667 0.0697000 5.012846e-01 4.958487e-10 FALSE TRUE
MSTRG.4132.9 ENSG00000107736 HEK293_OSMI2_2hA HEK293_TMG_2hB CDH23 protein_coding   4.374644 7.638594 2.787246 0.2075074 0.1718508 -1.451187 0.4901684 1.15985000 0.0000000 0.09984004 0.00000000 -6.8701798 0.1311375 0.15256667 0.00000000 -0.1525667 4.958487e-10 4.958487e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000107736 E001 0.8502072 0.0142735530 4.474841e-01 0.5888598728 10 71396920 71396933 14 + 0.334 0.190 -1.070
ENSG00000107736 E002 1.0716524 0.0121989077 6.281631e-01 0.7437715541 10 71396934 71396935 2 + 0.334 0.239 -0.654
ENSG00000107736 E003 1.0716524 0.0121989077 6.281631e-01 0.7437715541 10 71396936 71396936 1 + 0.334 0.239 -0.654
ENSG00000107736 E004 2.2583017 0.0799694623 1.434536e-01 0.2527115198 10 71396937 71396948 12 + 0.651 0.362 -1.417
ENSG00000107736 E005 5.6809004 0.0039192422 6.167463e-02 0.1294447795 10 71396949 71396961 13 + 0.930 0.669 -1.032
ENSG00000107736 E006 13.0755647 0.0340546572 8.724367e-02 0.1709608049 10 71396962 71397128 167 + 1.220 0.999 -0.798
ENSG00000107736 E007 9.7794907 0.0150468616 1.726405e-02 0.0455334543 10 71397129 71397205 77 + 1.155 0.862 -1.083
ENSG00000107736 E008 3.5826245 0.0046155709 1.249542e-04 0.0006364692 10 71397206 71397213 8 + 0.958 0.392 -2.462
ENSG00000107736 E009 8.7682082 0.0020900755 3.996215e-05 0.0002303578 10 71397214 71397318 105 + 1.220 0.761 -1.709
ENSG00000107736 E010 4.9652699 0.0106986951 5.429177e-02 0.1167576202 10 71439827 71439831 5 + 0.899 0.616 -1.149
ENSG00000107736 E011 12.7417147 0.0273110733 3.735749e-01 0.5179989557 10 71439832 71439898 67 + 1.137 1.026 -0.403
ENSG00000107736 E012 21.9632853 0.0077642615 6.558218e-01 0.7656447535 10 71446318 71446395 78 + 1.302 1.255 -0.166
ENSG00000107736 E013 35.2002113 0.0069006656 7.787585e-01 0.8576579397 10 71510082 71510224 143 + 1.449 1.467 0.059
ENSG00000107736 E014 25.3624085 0.0013264553 3.090668e-01 0.4513530826 10 71510954 71511001 48 + 1.263 1.341 0.272
ENSG00000107736 E015 38.0409209 0.0016100795 5.463212e-01 0.6765209297 10 71511120 71511212 93 + 1.467 1.501 0.117
ENSG00000107736 E016 0.0000000       10 71512113 71512317 205 +      
ENSG00000107736 E017 56.4052040 0.0027436828 1.490905e-01 0.2604403391 10 71566742 71566936 195 + 1.734 1.646 -0.298
ENSG00000107736 E018 25.0703742 0.0069115458 7.424737e-02 0.1503269376 10 71570790 71570794 5 + 1.440 1.285 -0.540
ENSG00000107736 E019 51.5518228 0.0004976476 3.372751e-02 0.0792112518 10 71570795 71570918 124 + 1.719 1.597 -0.416
ENSG00000107736 E020 41.8153001 0.0005621512 1.883986e-01 0.3117111273 10 71577914 71577992 79 + 1.611 1.524 -0.296
ENSG00000107736 E021 45.4607070 0.0005767325 3.295646e-01 0.4730787171 10 71615504 71615616 113 + 1.538 1.590 0.180
ENSG00000107736 E022 36.7898678 0.0009505605 1.948994e-02 0.0503904519 10 71617205 71617284 80 + 1.361 1.522 0.555
ENSG00000107736 E023 36.0017964 0.0006678829 9.380578e-04 0.0037474639 10 71617285 71617393 109 + 1.277 1.520 0.842
ENSG00000107736 E024 1.4446131 0.0250227042 4.262791e-01 0.5691444445 10 71635238 71635297 60 + 0.437 0.283 -0.913
ENSG00000107736 E025 6.8838164 0.0026664087 7.795001e-01 0.8582252167 10 71643861 71643866 6 + 0.792 0.825 0.129
ENSG00000107736 E026 49.6515733 0.0131617167 4.049834e-01 0.5486593995 10 71645831 71645980 150 + 1.566 1.630 0.217
ENSG00000107736 E027 52.4317754 0.0313490620 8.544037e-01 0.9099220961 10 71646459 71646617 159 + 1.629 1.643 0.049
ENSG00000107736 E028 11.7831427 0.0035411988 4.322506e-01 0.5747010646 10 71646618 71646782 165 + 0.958 1.044 0.317
ENSG00000107736 E029 5.9231467 0.1973167951 7.841380e-01 0.8615240736 10 71647619 71647908 290 + 0.793 0.762 -0.125
ENSG00000107736 E030 14.1171942 0.0013235979 7.641196e-02 0.1537613618 10 71675112 71675176 65 + 0.930 1.124 0.711
ENSG00000107736 E031 26.5547693 0.0010442744 1.451136e-01 0.2549956254 10 71677456 71677693 238 + 1.263 1.375 0.392
ENSG00000107736 E032 17.3813726 0.0010649707 9.211993e-01 0.9542784447 10 71679387 71679492 106 + 1.172 1.174 0.008
ENSG00000107736 E033 18.6013206 0.0348311663 6.938377e-01 0.7948180021 10 71682445 71682572 128 + 1.173 1.219 0.165
ENSG00000107736 E034 15.3193889 0.0027043451 3.330205e-01 0.4766955931 10 71687647 71687719 73 + 1.057 1.152 0.343
ENSG00000107736 E035 20.8856537 0.0012142085 2.144891e-01 0.3438545404 10 71690468 71690584 117 + 1.172 1.278 0.374
ENSG00000107736 E036 22.3388198 0.0012378129 1.882435e-01 0.3115252131 10 71694147 71694259 113 + 1.189 1.299 0.388
ENSG00000107736 E037 19.4220376 0.0341041949 6.061518e-01 0.7263813775 10 71695418 71695525 108 + 1.172 1.237 0.233
ENSG00000107736 E038 24.7237298 0.0097366787 2.552978e-01 0.3921497988 10 71702022 71702211 190 + 1.235 1.338 0.363
ENSG00000107736 E039 22.4465406 0.0009694998 1.356329e-01 0.2419937884 10 71702549 71702694 146 + 1.172 1.299 0.447
ENSG00000107736 E040 23.4281535 0.0017042719 7.988212e-02 0.1593780839 10 71704911 71705130 220 + 1.172 1.322 0.529
ENSG00000107736 E041 25.1826072 0.0009805926 5.047731e-01 0.6406489769 10 71706897 71707049 153 + 1.290 1.337 0.165
ENSG00000107736 E042 25.7696093 0.0008192581 1.187289e-01 0.2181228876 10 71707050 71707227 178 + 1.235 1.359 0.433
ENSG00000107736 E043 18.5266585 0.0010574897 4.094994e-04 0.0018108457 10 71707228 71707510 283 + 0.866 1.252 1.410
ENSG00000107736 E044 3.6297773 0.0421952072 2.191584e-02 0.0555017403 10 71709098 71709211 114 + 0.867 0.480 -1.656
ENSG00000107736 E045 0.0000000       10 71712604 71712664 61 +      
ENSG00000107736 E046 3.5459024 0.0056845314 1.099771e-02 0.0311562921 10 71712665 71712813 149 + 0.867 0.479 -1.656
ENSG00000107736 E047 0.0000000       10 71712814 71712817 4 +      
ENSG00000107736 E048 2.0670323 0.0073397866 1.955692e-01 0.3206764434 10 71713052 71715201 2150 + 0.590 0.359 -1.169
ENSG00000107736 E049 13.1670265 0.0152481329 3.803872e-01 0.5246837830 10 71715202 71717907 2706 + 1.155 1.049 -0.381
ENSG00000107736 E050 0.7019140 0.0163375143 2.750778e-01 0.4143235107 10 71724045 71724051 7 + 0.334 0.136 -1.654
ENSG00000107736 E051 1.0319116 0.0121989077 6.272648e-01 0.7430758919 10 71724052 71724105 54 + 0.334 0.239 -0.655
ENSG00000107736 E052 1.1748942 0.0578698325 3.269946e-01 0.4704473596 10 71725372 71725520 149 + 0.437 0.239 -1.237
ENSG00000107736 E053 1.5426555 0.0462622537 4.156825e-01 0.5590485112 10 71730469 71730604 136 + 0.198 0.361 1.168
ENSG00000107736 E054 2.9495168 0.0053439389 9.327023e-01 0.9616145947 10 71731987 71732375 389 + 0.520 0.529 0.045
ENSG00000107736 E055 2.5860063 0.0121243252 2.960724e-01 0.4372434308 10 71732376 71732723 348 + 0.334 0.529 1.043
ENSG00000107736 E056 0.1817044 0.0397595670 1.000000e+00   10 71734240 71734341 102 + 0.000 0.073 11.777
ENSG00000107736 E057 0.0000000       10 71734656 71734658 3 +      
ENSG00000107736 E058 0.5106578 0.1956052018 7.228879e-01 0.8168886886 10 71738498 71738647 150 + 0.198 0.136 -0.649
ENSG00000107736 E059 0.6976476 0.0435344121 2.875195e-01 0.4280224812 10 71739644 71739772 129 + 0.333 0.136 -1.650
ENSG00000107736 E060 0.4427912 0.1136052139 1.472695e-01 0.2579775550 10 71740822 71740950 129 + 0.333 0.073 -2.664
ENSG00000107736 E061 0.6652806 0.0198591594 1.000000e+00 1.0000000000 10 71741694 71741921 228 + 0.198 0.190 -0.072
ENSG00000107736 E062 0.1482932 0.0419335775 1.000000e+00   10 71741922 71742036 115 + 0.000 0.073 11.769
ENSG00000107736 E063 0.3666179 0.0308248484 4.107120e-01 0.5543141593 10 71777680 71777901 222 + 0.198 0.073 -1.652
ENSG00000107736 E064 0.2924217 0.0290785164 3.333847e-02   10 71778189 71778308 120 + 0.333 0.000 -15.947
ENSG00000107736 E065 0.0000000       10 71779267 71779447 181 +      
ENSG00000107736 E066 0.1472490 0.0419736521 1.494428e-01   10 71784287 71784420 134 + 0.198 0.000 -14.963
ENSG00000107736 E067 0.4439371 0.0216576215 7.182781e-03 0.0216981548 10 71784891 71785100 210 + 0.437 0.000 -16.502
ENSG00000107736 E068 0.2924217 0.0290785164 3.333847e-02   10 71785631 71785738 108 + 0.333 0.000 -15.947
ENSG00000107736 E069 0.1472490 0.0419736521 1.494428e-01   10 71788940 71789042 103 + 0.198 0.000 -14.963
ENSG00000107736 E070 0.2924217 0.0290785164 3.333847e-02   10 71790288 71790413 126 + 0.333 0.000 -15.947
ENSG00000107736 E071 0.4804688 0.0209315745 1.254125e-01 0.2277316276 10 71791132 71791335 204 + 0.334 0.073 -2.655
ENSG00000107736 E072 0.3634088 0.3477346387 8.788467e-01   10 71793182 71793636 455 + 0.000 0.136 12.291
ENSG00000107736 E073 0.0000000       10 71793637 71793640 4 +      
ENSG00000107736 E074 0.0000000       10 71794536 71794628 93 +      
ENSG00000107736 E075 0.0000000       10 71795532 71795770 239 +      
ENSG00000107736 E076 0.0000000       10 71795771 71796079 309 +      
ENSG00000107736 E077 0.0000000       10 71796856 71797103 248 +      
ENSG00000107736 E078 0.3268771 0.0298222471 4.094966e-01   10 71797104 71797220 117 + 0.198 0.073 -1.655
ENSG00000107736 E079 0.4741261 0.0208497536 1.255396e-01 0.2279248167 10 71798354 71798578 225 + 0.333 0.073 -2.655
ENSG00000107736 E080 0.3289534 0.0284801278 4.105689e-01   10 71799111 71799280 170 + 0.198 0.073 -1.655
ENSG00000107736 E081 0.4762024 0.1251801294 1.516368e-01 0.2638809334 10 71799492 71799629 138 + 0.333 0.073 -2.653
ENSG00000107736 E082 0.4772466 0.0205408157 7.159326e-01 0.8117161837 10 71800636 71800755 120 + 0.198 0.136 -0.657
ENSG00000107736 E083 0.4417591 0.1654358571 7.041398e-01 0.8027414780 10 71802898 71803075 178 + 0.198 0.134 -0.680
ENSG00000107736 E084 0.7373013 0.2008628809 4.511169e-01 0.5921138298 10 71803209 71803420 212 + 0.333 0.186 -1.111
ENSG00000107736 E085 0.2924217 0.0290785164 3.333847e-02   10 71805806 71805997 192 + 0.333 0.000 -15.947
ENSG00000107736 E086 0.1472490 0.0419736521 1.494428e-01   10 71806168 71806281 114 + 0.198 0.000 -14.963
ENSG00000107736 E087 0.5879639 0.0191087991 3.574660e-02 0.0830940928 10 71807277 71807406 130 + 0.437 0.073 -3.242
ENSG00000107736 E088 0.6611159 0.0190616265 3.599463e-02 0.0835732398 10 71807516 71807767 252 + 0.437 0.073 -3.238
ENSG00000107736 E089 0.1451727 0.0438778278 1.489488e-01   10 71807846 71808007 162 + 0.198 0.000 -14.955
ENSG00000107736 E090 0.1451727 0.0438778278 1.489488e-01   10 71809820 71810076 257 + 0.198 0.000 -14.955
ENSG00000107736 E091 0.0000000       10 71810472 71810569 98 +      
ENSG00000107736 E092 0.0000000       10 71811315 71811435 121 +      
ENSG00000107736 E093 0.0000000       10 71811511 71811590 80 +      
ENSG00000107736 E094 0.0000000       10 71811713 71811753 41 +      
ENSG00000107736 E095 0.1515154 0.0440927761 1.487797e-01   10 71811955 71812015 61 + 0.198 0.000 -14.954
ENSG00000107736 E096 0.6568746 0.0194849636 1.000000e+00 1.0000000000 10 71812480 71812609 130 + 0.198 0.190 -0.071
ENSG00000107736 E097 0.8051678 0.0162570080 8.282692e-01 0.8920738430 10 71812768 71812890 123 + 0.198 0.239 0.343
ENSG00000107736 E098 0.0000000       10 71813244 71813348 105 +      
ENSG00000107736 E099 4.2289099 0.0040605338 6.807234e-01 0.7845823274 10 71814952 71815947 996 + 0.590 0.652 0.272