ENSG00000107331

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000341511 ENSG00000107331 HEK293_OSMI2_2hA HEK293_TMG_2hB ABCA2 protein_coding protein_coding 17.37826 24.74544 12.07734 2.855979 0.734712 -1.034249 1.7607002 2.821235 1.7683969 0.3410307 0.30162753 -0.67085437 0.10690833 0.11506667 0.14613333 0.03106667 6.333284e-01 1.020116e-05 FALSE TRUE
ENST00000371605 ENSG00000107331 HEK293_OSMI2_2hA HEK293_TMG_2hB ABCA2 protein_coding protein_coding 17.37826 24.74544 12.07734 2.855979 0.734712 -1.034249 2.9830182 2.681145 2.7214337 0.3958057 0.51127671 0.02143828 0.18820833 0.11216667 0.22810000 0.11593333 1.680213e-01 1.020116e-05 FALSE TRUE
ENST00000431584 ENSG00000107331 HEK293_OSMI2_2hA HEK293_TMG_2hB ABCA2 protein_coding retained_intron 17.37826 24.74544 12.07734 2.855979 0.734712 -1.034249 1.1143580 0.876947 1.5428177 0.6793220 0.20260310 0.80796871 0.07323333 0.03036667 0.12833333 0.09796667 1.987192e-01 1.020116e-05 FALSE FALSE
ENST00000463603 ENSG00000107331 HEK293_OSMI2_2hA HEK293_TMG_2hB ABCA2 protein_coding retained_intron 17.37826 24.74544 12.07734 2.855979 0.734712 -1.034249 1.4772108 2.847359 0.7940337 0.2820269 0.36894149 -1.82935435 0.07568333 0.12010000 0.06460000 -0.05550000 4.520568e-01 1.020116e-05 TRUE TRUE
ENST00000464157 ENSG00000107331 HEK293_OSMI2_2hA HEK293_TMG_2hB ABCA2 protein_coding processed_transcript 17.37826 24.74544 12.07734 2.855979 0.734712 -1.034249 2.5151611 2.540598 1.7324758 0.3836090 0.21850871 -0.54969706 0.14219583 0.10360000 0.14233333 0.03873333 3.362506e-01 1.020116e-05 FALSE TRUE
ENST00000464520 ENSG00000107331 HEK293_OSMI2_2hA HEK293_TMG_2hB ABCA2 protein_coding retained_intron 17.37826 24.74544 12.07734 2.855979 0.734712 -1.034249 2.8780456 6.296644 0.7297445 1.4240330 0.03177177 -3.09177366 0.14285000 0.24896667 0.06116667 -0.18780000 1.020116e-05 1.020116e-05 FALSE TRUE
ENST00000479446 ENSG00000107331 HEK293_OSMI2_2hA HEK293_TMG_2hB ABCA2 protein_coding nonsense_mediated_decay 17.37826 24.74544 12.07734 2.855979 0.734712 -1.034249 2.5633442 3.888150 1.4484248 0.3883005 0.16699750 -1.41837853 0.14226667 0.15976667 0.11920000 -0.04056667 4.171862e-01 1.020116e-05 TRUE TRUE
ENST00000490486 ENSG00000107331 HEK293_OSMI2_2hA HEK293_TMG_2hB ABCA2 protein_coding protein_coding 17.37826 24.74544 12.07734 2.855979 0.734712 -1.034249 0.5782817 1.816660 0.0000000 1.1351217 0.00000000 -7.51306455 0.02828750 0.07180000 0.00000000 -0.07180000 2.275093e-01 1.020116e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000107331 E001 0.8502072 0.0142039533 8.611431e-01 9.144305e-01 9 137007234 137007241 8 - 0.267 0.243 -0.180
ENSG00000107331 E002 37.6570474 0.0052305599 2.540196e-08 2.901088e-07 9 137007242 137007376 135 - 1.211 1.663 1.559
ENSG00000107331 E003 170.9832742 0.0058072406 5.323141e-12 1.158343e-10 9 137007377 137007656 280 - 1.936 2.295 1.203
ENSG00000107331 E004 179.2665495 0.0156047851 3.344413e-06 2.478927e-05 9 137007657 137007850 194 - 1.969 2.314 1.154
ENSG00000107331 E005 134.0643528 0.0187260829 2.773101e-04 1.287258e-03 9 137007851 137007964 114 - 1.877 2.181 1.020
ENSG00000107331 E006 13.3668183 0.0013345690 2.159853e-01 3.455775e-01 9 137008236 137008415 180 - 1.188 1.088 -0.360
ENSG00000107331 E007 153.1950813 0.0087978715 1.768192e-06 1.391454e-05 9 137008416 137008595 180 - 1.942 2.236 0.982
ENSG00000107331 E008 70.4870299 0.0011892413 3.080549e-06 2.298636e-05 9 137008596 137008622 27 - 1.638 1.888 0.846
ENSG00000107331 E009 132.7200575 0.0043521899 1.368255e-07 1.354082e-06 9 137008731 137008868 138 - 1.898 2.168 0.906
ENSG00000107331 E010 122.6627130 0.0049674593 2.912396e-04 1.344210e-03 9 137008951 137009053 103 - 1.921 2.118 0.662
ENSG00000107331 E011 6.2896893 0.0037070739 7.407919e-01 8.301243e-01 9 137009054 137009183 130 - 0.841 0.813 -0.110
ENSG00000107331 E012 1.5416008 0.3656342597 1.898338e-01 3.135545e-01 9 137009351 137009369 19 - 0.548 0.254 -1.671
ENSG00000107331 E013 77.6320930 0.0042495439 2.786569e-02 6.775076e-02 9 137009370 137009406 37 - 1.772 1.907 0.455
ENSG00000107331 E014 89.7084616 0.0011133080 5.830298e-03 1.816396e-02 9 137009407 137009462 56 - 1.833 1.968 0.456
ENSG00000107331 E015 126.5150031 0.0004768944 8.010792e-06 5.439674e-05 9 137009541 137009644 104 - 1.948 2.124 0.590
ENSG00000107331 E016 130.9370100 0.0002947941 1.452033e-06 1.165064e-05 9 137009769 137009903 135 - 1.953 2.137 0.617
ENSG00000107331 E017 114.4754175 0.0007565571 4.253661e-06 3.073861e-05 9 137009983 137010124 142 - 1.886 2.082 0.656
ENSG00000107331 E018 2.9152493 0.1398870063 8.012374e-01 8.733517e-01 9 137010125 137010192 68 - 0.494 0.584 0.421
ENSG00000107331 E019 137.4292285 0.0036298623 2.742243e-04 1.274870e-03 9 137010193 137010371 179 - 1.977 2.160 0.613
ENSG00000107331 E020 9.4325663 0.0021015770 7.601812e-01 8.443600e-01 9 137010372 137010619 248 - 0.996 0.978 -0.069
ENSG00000107331 E021 107.2955327 0.0031707335 1.200617e-02 3.354571e-02 9 137010620 137010737 118 - 1.909 2.042 0.443
ENSG00000107331 E022 114.2784536 0.0025371141 1.859680e-01 3.087061e-01 9 137010973 137011105 133 - 1.980 2.053 0.244
ENSG00000107331 E023 1.8381116 0.0409479662 9.977378e-01 1.000000e+00 9 137011106 137011185 80 - 0.431 0.439 0.042
ENSG00000107331 E024 105.2799537 0.0007052699 7.119109e-01 8.087731e-01 9 137011186 137011309 124 - 1.973 2.003 0.103
ENSG00000107331 E025 82.3345939 0.0003218717 2.204053e-01 3.508893e-01 9 137011407 137011476 70 - 1.909 1.876 -0.112
ENSG00000107331 E026 77.9520276 0.0003280085 3.274354e-01 4.709000e-01 9 137011477 137011554 78 - 1.881 1.857 -0.082
ENSG00000107331 E027 1.8467199 0.0144620622 2.253712e-01 3.568518e-01 9 137011555 137011633 79 - 0.550 0.352 -1.026
ENSG00000107331 E028 90.2793272 0.0002996036 3.534872e-02 8.232173e-02 9 137011634 137011749 116 - 1.969 1.904 -0.217
ENSG00000107331 E029 101.1449671 0.0002971710 2.979504e-02 7.156272e-02 9 137011844 137012018 175 - 2.016 1.953 -0.211
ENSG00000107331 E030 66.3711979 0.0008208377 1.684765e-01 2.861850e-01 9 137012102 137012162 61 - 1.822 1.775 -0.158
ENSG00000107331 E031 62.5012368 0.0025813787 2.009712e-01 3.273879e-01 9 137012265 137012324 60 - 1.796 1.749 -0.159
ENSG00000107331 E032 55.4545996 0.0005099698 4.008592e-01 5.445402e-01 9 137012325 137012376 52 - 1.733 1.707 -0.085
ENSG00000107331 E033 69.6198277 0.0003625663 4.507661e-01 5.918009e-01 9 137012485 137012590 106 - 1.824 1.808 -0.057
ENSG00000107331 E034 0.8815421 0.0158986221 8.607137e-01 9.141519e-01 9 137012591 137012637 47 - 0.267 0.243 -0.178
ENSG00000107331 E035 70.6600630 0.0040431840 6.752075e-01 7.805421e-01 9 137012712 137012925 214 - 1.790 1.833 0.145
ENSG00000107331 E036 1.3318089 0.0099946438 1.356948e-01 2.420823e-01 9 137012926 137012949 24 - 0.494 0.243 -1.501
ENSG00000107331 E037 74.4422528 0.0054404419 2.169866e-02 5.504850e-02 9 137013002 137013318 317 - 1.733 1.887 0.519
ENSG00000107331 E038 56.6388148 0.0009370430 8.581665e-01 9.124982e-01 9 137013461 137013563 103 - 1.719 1.727 0.027
ENSG00000107331 E039 77.2474476 0.0003545029 6.388722e-02 1.331710e-01 9 137013832 137014038 207 - 1.898 1.837 -0.205
ENSG00000107331 E040 90.8112899 0.0003452796 1.246733e-02 3.465888e-02 9 137014168 137014404 237 - 1.979 1.899 -0.268
ENSG00000107331 E041 56.7326560 0.0080831700 6.565462e-02 1.361375e-01 9 137014690 137014810 121 - 1.787 1.693 -0.320
ENSG00000107331 E042 64.0788100 0.0096260501 1.035418e-01 1.958963e-01 9 137014913 137015097 185 - 1.830 1.751 -0.267
ENSG00000107331 E043 70.2088663 0.0006621415 2.438893e-04 1.149641e-03 9 137015414 137015596 183 - 1.909 1.765 -0.486
ENSG00000107331 E044 81.7684330 0.0006796335 8.455103e-05 4.495885e-04 9 137015675 137015871 197 - 1.977 1.832 -0.485
ENSG00000107331 E045 91.9541279 0.0048647445 1.795120e-04 8.759534e-04 9 137015962 137016174 213 - 2.040 1.875 -0.555
ENSG00000107331 E046 76.7857398 0.0045639502 1.885601e-02 4.901770e-02 9 137016291 137016471 181 - 1.925 1.822 -0.345
ENSG00000107331 E047 47.1172742 0.0035752328 1.824983e-01 3.043491e-01 9 137016574 137016697 124 - 1.686 1.625 -0.205
ENSG00000107331 E048 28.4130149 0.0011868590 2.624560e-02 6.444868e-02 9 137016698 137016738 41 - 1.522 1.389 -0.457
ENSG00000107331 E049 71.6799961 0.0005387254 2.284065e-10 3.785734e-09 9 137016920 137017124 205 - 1.982 1.730 -0.850
ENSG00000107331 E050 60.8794625 0.0032837045 1.915318e-07 1.842165e-06 9 137017196 137017346 151 - 1.914 1.659 -0.862
ENSG00000107331 E051 40.4984907 0.0008531130 5.827698e-03 1.815766e-02 9 137017502 137017561 60 - 1.674 1.534 -0.477
ENSG00000107331 E052 57.0958099 0.0065454372 1.015261e-03 4.011641e-03 9 137017562 137017692 131 - 1.846 1.667 -0.607
ENSG00000107331 E053 2.1733972 0.0975547172 8.718280e-02 1.708740e-01 9 137017693 137017786 94 - 0.683 0.350 -1.623
ENSG00000107331 E054 48.5202682 0.0087089445 2.954918e-03 1.012975e-02 9 137017787 137017901 115 - 1.778 1.598 -0.611
ENSG00000107331 E055 0.4396707 0.0243139943 2.722727e-02 6.645184e-02 9 137017902 137017972 71 - 0.356 0.000 -12.460
ENSG00000107331 E056 50.7610590 0.0111947818 7.140043e-05 3.869939e-04 9 137017973 137018075 103 - 1.838 1.581 -0.871
ENSG00000107331 E057 36.5772348 0.0043286997 3.739052e-06 2.740452e-05 9 137018178 137018211 34 - 1.708 1.425 -0.966
ENSG00000107331 E058 57.5621715 0.0132061989 1.090442e-03 4.271642e-03 9 137018212 137018351 140 - 1.871 1.656 -0.728
ENSG00000107331 E059 35.2512727 0.0171784253 7.079666e-02 1.446747e-01 9 137018719 137018782 64 - 1.616 1.482 -0.458
ENSG00000107331 E060 27.1924159 0.0009396839 2.690022e-02 6.578415e-02 9 137018783 137018815 33 - 1.505 1.371 -0.462
ENSG00000107331 E061 29.9354110 0.0006674765 5.502061e-02 1.180356e-01 9 137018903 137018954 52 - 1.527 1.419 -0.373
ENSG00000107331 E062 36.5233556 0.0006085788 2.175947e-04 1.039204e-03 9 137018955 137019070 116 - 1.662 1.462 -0.685
ENSG00000107331 E063 35.6594138 0.0158074284 4.029010e-03 1.322335e-02 9 137019178 137019306 129 - 1.671 1.446 -0.769
ENSG00000107331 E064 0.2966881 0.0295927611 8.689418e-02   9 137019307 137019363 57 - 0.267 0.000 -11.876
ENSG00000107331 E065 0.3268771 0.0274424043 6.786630e-01   9 137019426 137020182 757 - 0.154 0.097 -0.764
ENSG00000107331 E066 0.6632174 0.0213918745 6.412895e-01 7.543550e-01 9 137020183 137020335 153 - 0.154 0.243 0.819
ENSG00000107331 E067 41.2405552 0.0368695312 9.593640e-02 1.842900e-01 9 137020336 137020479 144 - 1.695 1.537 -0.536
ENSG00000107331 E068 17.5902211 0.0808080332 5.113129e-01 6.463683e-01 9 137020480 137020495 16 - 1.286 1.212 -0.261
ENSG00000107331 E069 48.7842672 0.0343291737 2.283125e-01 3.604156e-01 9 137020694 137021061 368 - 1.734 1.631 -0.349
ENSG00000107331 E070 38.3921638 0.0011021257 1.042470e-01 1.969590e-01 9 137021392 137021610 219 - 1.612 1.532 -0.273
ENSG00000107331 E071 0.0000000       9 137021611 137021666 56 -      
ENSG00000107331 E072 0.0000000       9 137021667 137021780 114 -      
ENSG00000107331 E073 0.1482932 0.0419133887 8.255203e-01   9 137021781 137021890 110 - 0.000 0.097 9.067
ENSG00000107331 E074 36.2155502 0.0159337171 1.015318e-01 1.928078e-01 9 137021891 137022001 111 - 1.616 1.499 -0.399
ENSG00000107331 E075 37.2854022 0.0006001493 3.711746e-06 2.722862e-05 9 137022351 137022478 128 - 1.701 1.451 -0.854
ENSG00000107331 E076 46.9465916 0.0044696033 2.752520e-06 2.078088e-05 9 137022702 137022865 164 - 1.802 1.541 -0.887
ENSG00000107331 E077 0.5483223 0.0217681645 9.371473e-01 9.644915e-01 9 137022866 137022940 75 - 0.154 0.176 0.238
ENSG00000107331 E078 31.7854301 0.0221356350 8.569385e-03 2.521268e-02 9 137022941 137023052 112 - 1.611 1.397 -0.736
ENSG00000107331 E079 15.6580998 0.0541435307 1.501131e-03 5.639309e-03 9 137023053 137023812 760 - 1.416 1.004 -1.463
ENSG00000107331 E080 2.6719376 0.0078940513 4.774817e-03 1.530376e-02 9 137023813 137023837 25 - 0.785 0.352 -2.029
ENSG00000107331 E081 8.9091915 0.0022669435 1.144461e-03 4.452414e-03 9 137023838 137023840 3 - 1.164 0.829 -1.241
ENSG00000107331 E082 23.4974038 0.0009711314 1.956678e-10 3.283320e-09 9 137024143 137024236 94 - 1.598 1.161 -1.517
ENSG00000107331 E083 15.0717503 0.0023517267 7.997320e-09 1.004021e-07 9 137028075 137028288 214 - 1.436 0.942 -1.763
ENSG00000107331 E084 0.8931703 0.1383546362 3.265400e-01 4.699707e-01 9 137028717 137028915 199 - 0.357 0.179 -1.326