ENSG00000104738

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000649919 ENSG00000104738 HEK293_OSMI2_2hA HEK293_TMG_2hB MCM4 protein_coding protein_coding 143.0554 106.5337 172.8221 9.16066 2.096702 0.6979264 10.79286 0.1276227 17.79982 0.0638364 1.646421 7.0158109 0.05924167 0.001333333 0.1032 0.1018667 4.141234e-09 2.994064e-09 FALSE TRUE
ENST00000649973 ENSG00000104738 HEK293_OSMI2_2hA HEK293_TMG_2hB MCM4 protein_coding protein_coding 143.0554 106.5337 172.8221 9.16066 2.096702 0.6979264 97.97889 91.6289868 118.95512 8.0819125 2.883193 0.3765052 0.70229583 0.861633333 0.6881 -0.1735333 8.852429e-03 2.994064e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000104738 E001 3.2020960 4.977893e-03 1.417874e-03 5.366335e-03 8 47960185 47960320 136 + 0.320 0.835 2.426
ENSG00000104738 E002 0.8073328 1.493805e-02 9.097769e-01 9.466543e-01 8 47960823 47960897 75 + 0.259 0.250 -0.064
ENSG00000104738 E003 0.8073328 1.493805e-02 9.097769e-01 9.466543e-01 8 47960898 47960898 1 + 0.259 0.250 -0.064
ENSG00000104738 E004 12.1110876 5.885879e-03 2.665727e-01 4.047883e-01 8 47960899 47960935 37 + 1.054 1.188 0.480
ENSG00000104738 E005 19.5582404 1.660060e-02 6.448070e-01 7.570496e-01 8 47960936 47960940 5 + 1.324 1.295 -0.102
ENSG00000104738 E006 24.9602903 2.077429e-02 5.471172e-01 6.772012e-01 8 47960941 47960948 8 + 1.433 1.387 -0.156
ENSG00000104738 E007 37.0133762 1.830278e-02 1.178449e-01 2.168438e-01 8 47960949 47960951 3 + 1.632 1.507 -0.425
ENSG00000104738 E008 57.7386364 1.443961e-02 1.186623e-01 2.180323e-01 8 47960952 47960957 6 + 1.812 1.708 -0.351
ENSG00000104738 E009 249.9204634 1.166559e-02 6.793542e-03 2.068624e-02 8 47960958 47961014 57 + 2.458 2.314 -0.481
ENSG00000104738 E010 12.0756408 2.680524e-02 9.250295e-01 9.567940e-01 8 47961015 47961130 116 + 1.104 1.109 0.018
ENSG00000104738 E011 258.5548213 9.400552e-03 2.237821e-03 7.959829e-03 8 47961131 47961137 7 + 2.474 2.326 -0.494
ENSG00000104738 E012 379.2923067 8.777338e-03 1.447960e-02 3.931432e-02 8 47961138 47961214 77 + 2.624 2.517 -0.357
ENSG00000104738 E013 15.2589554 2.283480e-02 2.459862e-06 1.876665e-05 8 47961215 47961426 212 + 1.382 0.813 -2.069
ENSG00000104738 E014 11.0223071 1.757882e-03 1.347904e-04 6.803153e-04 8 47961427 47961496 70 + 1.217 0.835 -1.406
ENSG00000104738 E015 7.2525754 5.627936e-02 5.028998e-02 1.096792e-01 8 47961497 47961515 19 + 1.032 0.748 -1.086
ENSG00000104738 E016 679.8998666 4.692001e-03 6.866756e-05 3.736998e-04 8 47961516 47961680 165 + 2.886 2.758 -0.426
ENSG00000104738 E017 2.2444623 2.119119e-02 1.871125e-02 4.870222e-02 8 47961857 47962052 196 + 0.656 0.250 -2.181
ENSG00000104738 E018 436.0231460 5.205835e-03 2.298048e-06 1.764227e-05 8 47962053 47962077 25 + 2.709 2.538 -0.570
ENSG00000104738 E019 870.5796372 2.001253e-03 2.179621e-12 5.059086e-11 8 47962078 47962216 139 + 3.004 2.848 -0.518
ENSG00000104738 E020 888.4365782 2.472868e-03 7.508132e-09 9.467805e-08 8 47962305 47962406 102 + 3.006 2.868 -0.458
ENSG00000104738 E021 790.7630965 3.728660e-03 1.301935e-05 8.418586e-05 8 47962764 47962848 85 + 2.950 2.826 -0.413
ENSG00000104738 E022 532.0816593 3.117499e-03 6.150175e-06 4.291147e-05 8 47962849 47962859 11 + 2.778 2.654 -0.415
ENSG00000104738 E023 905.4864322 1.575598e-03 7.681708e-11 1.380849e-09 8 47962945 47963040 96 + 3.010 2.882 -0.426
ENSG00000104738 E024 546.6340618 1.806512e-03 4.204180e-07 3.776527e-06 8 47964574 47964591 18 + 2.785 2.675 -0.366
ENSG00000104738 E025 1062.0439620 1.299424e-03 3.012928e-09 4.086413e-08 8 47964592 47964712 121 + 3.069 2.968 -0.338
ENSG00000104738 E026 852.4234160 4.975494e-04 2.839250e-09 3.871364e-08 8 47966187 47966275 89 + 2.963 2.889 -0.245
ENSG00000104738 E027 982.9879096 1.051926e-04 2.812076e-11 5.442225e-10 8 47966276 47966407 132 + 3.018 2.963 -0.185
ENSG00000104738 E028 898.7594645 9.786926e-04 6.499365e-07 5.619997e-06 8 47967365 47967450 86 + 2.986 2.912 -0.248
ENSG00000104738 E029 723.1591417 1.123711e-03 2.764425e-09 3.779404e-08 8 47967451 47967485 35 + 2.904 2.801 -0.344
ENSG00000104738 E030 3.1303700 1.598976e-02 3.639210e-01 5.083373e-01 8 47969025 47969278 254 + 0.656 0.525 -0.590
ENSG00000104738 E031 8.2099612 2.567519e-03 4.533644e-01 5.940923e-01 8 47969279 47969401 123 + 0.987 0.925 -0.232
ENSG00000104738 E032 7.2865612 1.714884e-02 5.606819e-01 6.886414e-01 8 47969686 47969797 112 + 0.935 0.883 -0.197
ENSG00000104738 E033 1299.0132856 1.049214e-03 2.376600e-10 3.927148e-09 8 47969798 47969940 143 + 3.155 3.059 -0.319
ENSG00000104738 E034 1187.8089619 1.362025e-03 5.937079e-04 2.510685e-03 8 47969941 47970057 117 + 3.097 3.047 -0.168
ENSG00000104738 E035 2.8776019 5.177184e-03 7.566354e-01 8.416898e-01 8 47970509 47970510 2 + 0.601 0.571 -0.132
ENSG00000104738 E036 1823.7498098 3.448466e-04 1.495517e-02 4.038273e-02 8 47970511 47970876 366 + 3.264 3.258 -0.021
ENSG00000104738 E037 12.2132333 1.436531e-03 4.931375e-03 1.573887e-02 8 47971041 47971189 149 + 1.217 0.963 -0.920
ENSG00000104738 E038 5.2269539 3.276652e-02 7.515455e-01 8.379615e-01 8 47971324 47971340 17 + 0.809 0.781 -0.110
ENSG00000104738 E039 834.6211062 1.113653e-04 1.059470e-01 1.995392e-01 8 47971341 47971431 91 + 2.902 2.949 0.156
ENSG00000104738 E040 610.7069403 1.062825e-04 2.100326e-03 7.535279e-03 8 47971432 47971468 37 + 2.754 2.825 0.238
ENSG00000104738 E041 2.9622168 1.014064e-01 9.820105e-02 1.877853e-01 8 47971469 47971470 2 + 0.421 0.750 1.499
ENSG00000104738 E042 1368.5927791 3.410358e-04 1.591587e-02 4.254338e-02 8 47972857 47973064 208 + 3.111 3.166 0.183
ENSG00000104738 E043 7.0092425 4.792088e-02 2.337057e-01 3.667869e-01 8 47973065 47973065 1 + 0.974 0.808 -0.634
ENSG00000104738 E044 43.9325653 1.811084e-02 2.158129e-03 7.714609e-03 8 47973692 47974733 1042 + 1.745 1.495 -0.851
ENSG00000104738 E045 652.8879153 1.021508e-04 1.387109e-03 5.264833e-03 8 47974734 47974754 21 + 2.783 2.855 0.239
ENSG00000104738 E046 1490.9401856 8.019063e-05 1.635720e-08 1.938217e-07 8 47974755 47974962 208 + 3.137 3.218 0.270
ENSG00000104738 E047 7.6759347 2.234538e-03 4.131330e-01 5.566627e-01 8 47975298 47975714 417 + 0.974 0.904 -0.265
ENSG00000104738 E048 1175.6797777 3.940253e-04 8.962464e-10 1.340527e-08 8 47975715 47975848 134 + 3.019 3.129 0.367
ENSG00000104738 E049 2153.4962672 1.342610e-03 1.580671e-20 1.076396e-18 8 47976686 47977292 607 + 3.232 3.428 0.652
ENSG00000104738 E050 1935.8574144 5.948913e-03 1.013643e-10 1.786672e-09 8 47977293 47977601 309 + 3.143 3.411 0.889
ENSG00000104738 E051 1048.0278699 5.856916e-03 7.665725e-16 2.942157e-14 8 47977602 47977736 135 + 2.831 3.172 1.134
ENSG00000104738 E052 1029.0508368 7.107897e-03 1.139092e-11 2.349457e-10 8 47977737 47978160 424 + 2.837 3.156 1.060