ENSG00000104517

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000220959 ENSG00000104517 HEK293_OSMI2_2hA HEK293_TMG_2hB UBR5 protein_coding protein_coding 20.68175 17.63375 19.9599 0.5420621 0.9428998 0.1786699 2.6338638 0.32970037 3.031328 0.32970037 0.6754142 3.1623669 0.11650833 0.017600000 0.15386667 0.13626667 6.276303e-02 1.137518e-07 FALSE TRUE
ENST00000517465 ENSG00000104517 HEK293_OSMI2_2hA HEK293_TMG_2hB UBR5 protein_coding retained_intron 20.68175 17.63375 19.9599 0.5420621 0.9428998 0.1786699 3.6200503 5.91716031 1.431780 0.57873779 0.3167687 -2.0394898 0.18715000 0.337733333 0.07053333 -0.26720000 3.468325e-07 1.137518e-07 TRUE TRUE
ENST00000518205 ENSG00000104517 HEK293_OSMI2_2hA HEK293_TMG_2hB UBR5 protein_coding protein_coding 20.68175 17.63375 19.9599 0.5420621 0.9428998 0.1786699 4.3213548 6.21036844 2.763911 0.09124146 0.6331850 -1.1650786 0.21990417 0.353133333 0.13616667 -0.21696667 2.509485e-04 1.137518e-07 FALSE TRUE
ENST00000520539 ENSG00000104517 HEK293_OSMI2_2hA HEK293_TMG_2hB UBR5 protein_coding protein_coding 20.68175 17.63375 19.9599 0.5420621 0.9428998 0.1786699 4.3830599 3.62891447 4.839042 0.35618609 0.4959225 0.4141915 0.21341667 0.205000000 0.24280000 0.03780000 6.067309e-01 1.137518e-07 FALSE TRUE
ENST00000521566 ENSG00000104517 HEK293_OSMI2_2hA HEK293_TMG_2hB UBR5 protein_coding protein_coding 20.68175 17.63375 19.9599 0.5420621 0.9428998 0.1786699 0.4739464 0.96365980 0.000000 0.48185956 0.0000000 -6.6053459 0.02277917 0.053966667 0.00000000 -0.05396667 1.657038e-01 1.137518e-07 FALSE FALSE
MSTRG.31937.3 ENSG00000104517 HEK293_OSMI2_2hA HEK293_TMG_2hB UBR5 protein_coding   20.68175 17.63375 19.9599 0.5420621 0.9428998 0.1786699 1.1225446 0.09171159 2.058089 0.09171159 0.2254772 4.3457424 0.05484583 0.004900000 0.10250000 0.09760000 3.692450e-03 1.137518e-07 FALSE TRUE
MSTRG.31937.5 ENSG00000104517 HEK293_OSMI2_2hA HEK293_TMG_2hB UBR5 protein_coding   20.68175 17.63375 19.9599 0.5420621 0.9428998 0.1786699 2.7746647 0.07223413 4.162022 0.07223413 0.2676341 5.6648658 0.12145417 0.003866667 0.21083333 0.20696667 2.304114e-05 1.137518e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000104517 E001 145.1215982 0.0080071120 1.296793e-06 1.051325e-05 8 102252273 102253735 1463 - 2.033 2.301 0.896
ENSG00000104517 E002 102.3164438 0.0003116351 6.348505e-17 2.799593e-15 8 102253736 102253945 210 - 1.861 2.172 1.042
ENSG00000104517 E003 179.0729167 0.0028314496 7.723341e-33 1.595599e-30 8 102253946 102254197 252 - 2.019 2.470 1.506
ENSG00000104517 E004 155.4783053 0.0056283546 1.554880e-20 1.059595e-18 8 102254198 102254350 153 - 1.965 2.405 1.472
ENSG00000104517 E005 197.1931164 0.0102149341 1.814446e-10 3.062829e-09 8 102254351 102254514 164 - 2.114 2.474 1.205
ENSG00000104517 E006 144.6444045 0.0107538391 2.829291e-08 3.200577e-07 8 102257632 102257717 86 - 1.994 2.328 1.116
ENSG00000104517 E007 4.2973272 0.0040627560 4.403860e-01 5.820658e-01 8 102258316 102258424 109 - 0.739 0.635 -0.435
ENSG00000104517 E008 167.5620990 0.0074554360 3.685759e-09 4.917615e-08 8 102258985 102259129 145 - 2.073 2.378 1.017
ENSG00000104517 E009 142.1433342 0.0022730528 7.302796e-12 1.554486e-10 8 102261146 102261259 114 - 2.023 2.291 0.898
ENSG00000104517 E010 149.5464125 0.0007103519 4.569070e-15 1.581865e-13 8 102261915 102262070 156 - 2.048 2.307 0.869
ENSG00000104517 E011 98.5392416 0.0006166611 5.291640e-10 8.252947e-09 8 102264474 102264558 85 - 1.873 2.119 0.826
ENSG00000104517 E012 127.1829423 0.0028897597 5.975811e-04 2.524866e-03 8 102265100 102265202 103 - 2.029 2.183 0.514
ENSG00000104517 E013 80.1723961 0.0014671152 3.310134e-02 7.801240e-02 8 102265203 102265207 5 - 1.850 1.958 0.363
ENSG00000104517 E014 104.8895083 0.0033335765 1.988681e-02 5.124868e-02 8 102265208 102265275 68 - 1.962 2.080 0.393
ENSG00000104517 E015 51.9580245 0.0086119759 1.305876e-01 2.349758e-01 8 102265276 102265278 3 - 1.665 1.778 0.381
ENSG00000104517 E016 104.8682519 0.0044636209 3.629323e-02 8.414175e-02 8 102266947 102267007 61 - 1.964 2.076 0.375
ENSG00000104517 E017 5.4388988 0.0050132183 4.331873e-01 5.756152e-01 8 102267008 102267092 85 - 0.819 0.721 -0.394
ENSG00000104517 E018 33.4963083 0.0006046397 1.105519e-08 1.351906e-07 8 102267093 102268977 1885 - 1.625 1.233 -1.357
ENSG00000104517 E019 126.1611000 0.0051130909 7.163598e-04 2.957466e-03 8 102268978 102269108 131 - 2.019 2.189 0.571
ENSG00000104517 E020 128.4948760 0.0002566404 3.356922e-06 2.486837e-05 8 102270039 102270183 145 - 2.030 2.193 0.547
ENSG00000104517 E021 90.7772028 0.0004356311 6.275572e-06 4.369628e-05 8 102271134 102271193 60 - 1.868 2.055 0.630
ENSG00000104517 E022 93.7721345 0.0008941349 5.349656e-05 2.992253e-04 8 102271194 102271245 52 - 1.890 2.062 0.580
ENSG00000104517 E023 182.5642819 0.0002227830 4.993763e-09 6.518213e-08 8 102272529 102272772 244 - 2.176 2.349 0.576
ENSG00000104517 E024 0.2924217 0.0272374285 4.797628e-01   8 102272773 102272931 159 - 0.161 0.000 -10.887
ENSG00000104517 E025 100.1759794 0.0003135902 2.075380e-05 1.282537e-04 8 102275521 102275619 99 - 1.918 2.087 0.567
ENSG00000104517 E026 102.9698909 0.0004988343 6.700438e-05 3.656569e-04 8 102275708 102275828 121 - 1.938 2.098 0.536
ENSG00000104517 E027 0.2944980 0.3708431719 5.922366e-01   8 102276774 102276971 198 - 0.161 0.000 -10.886
ENSG00000104517 E028 125.5602099 0.0002807585 1.357865e-03 5.169392e-03 8 102276972 102277192 221 - 2.040 2.159 0.400
ENSG00000104517 E029 99.4957645 0.0007429553 2.783856e-01 4.180750e-01 8 102278826 102278939 114 - 1.963 2.020 0.189
ENSG00000104517 E030 130.6881134 0.0002712381 1.720848e-02 4.540332e-02 8 102279036 102279208 173 - 2.066 2.158 0.306
ENSG00000104517 E031 96.2038605 0.0003154833 7.379370e-01 8.279666e-01 8 102280394 102280467 74 - 1.963 1.991 0.092
ENSG00000104517 E032 138.9860261 0.0002262208 8.227905e-01 8.882536e-01 8 102281289 102281519 231 - 2.123 2.145 0.074
ENSG00000104517 E033 96.7547837 0.0003885391 6.014117e-01 7.225430e-01 8 102285127 102285244 118 - 1.962 1.997 0.117
ENSG00000104517 E034 67.0932632 0.0004418105 4.297740e-01 5.724367e-01 8 102285245 102285338 94 - 1.798 1.848 0.170
ENSG00000104517 E035 109.2186932 0.0002978623 8.298419e-01 8.931815e-01 8 102285513 102285781 269 - 2.016 2.039 0.076
ENSG00000104517 E036 97.2956166 0.0033509278 8.883048e-02 1.733270e-01 8 102286360 102286617 258 - 1.998 1.933 -0.218
ENSG00000104517 E037 53.2547845 0.0101751222 4.624144e-01 6.022762e-01 8 102287433 102287504 72 - 1.730 1.693 -0.123
ENSG00000104517 E038 64.4729515 0.0028188870 1.159768e-01 2.142053e-01 8 102287505 102287564 60 - 1.822 1.755 -0.228
ENSG00000104517 E039 82.7666844 0.0003280217 5.527806e-03 1.735974e-02 8 102288155 102288266 112 - 1.941 1.840 -0.340
ENSG00000104517 E040 70.3599818 0.0006094267 5.028354e-04 2.170589e-03 8 102289453 102289528 76 - 1.883 1.736 -0.497
ENSG00000104517 E041 61.2381213 0.0049001442 5.659621e-03 1.771262e-02 8 102289529 102289576 48 - 1.825 1.676 -0.502
ENSG00000104517 E042 109.3851505 0.0065471503 4.639815e-04 2.022036e-03 8 102293605 102293844 240 - 2.081 1.910 -0.573
ENSG00000104517 E043 69.5824133 0.0016707773 3.126652e-05 1.852480e-04 8 102293955 102294115 161 - 1.894 1.701 -0.652
ENSG00000104517 E044 58.4269519 0.0056636962 6.830063e-04 2.836738e-03 8 102294982 102295111 130 - 1.821 1.624 -0.665
ENSG00000104517 E045 67.8986077 0.0003806448 1.765626e-05 1.108509e-04 8 102295204 102295330 127 - 1.883 1.696 -0.632
ENSG00000104517 E046 75.4722444 0.0003407671 5.559270e-06 3.916067e-05 8 102295414 102295532 119 - 1.928 1.740 -0.635
ENSG00000104517 E047 80.8542545 0.0048191003 1.087783e-04 5.624841e-04 8 102295636 102295782 147 - 1.960 1.764 -0.662
ENSG00000104517 E048 67.9408264 0.0004748757 1.074219e-06 8.856241e-06 8 102296893 102296984 92 - 1.890 1.671 -0.739
ENSG00000104517 E049 74.3020634 0.0026671091 7.385221e-09 9.323035e-08 8 102297458 102297606 149 - 1.947 1.657 -0.978
ENSG00000104517 E050 56.0330468 0.0006527498 2.855846e-04 1.321232e-03 8 102298392 102298489 98 - 1.798 1.625 -0.587
ENSG00000104517 E051 28.7595063 0.0006896277 1.402995e-04 7.048907e-04 8 102298848 102298859 12 - 1.539 1.278 -0.902
ENSG00000104517 E052 30.0751637 0.0006617756 1.837643e-07 1.773851e-06 8 102298860 102298866 7 - 1.579 1.208 -1.288
ENSG00000104517 E053 54.1898431 0.0004715615 8.126000e-07 6.879592e-06 8 102298867 102298971 105 - 1.801 1.551 -0.850
ENSG00000104517 E054 39.3359119 0.0005500973 2.442872e-05 1.485697e-04 8 102299452 102299496 45 - 1.665 1.416 -0.851
ENSG00000104517 E055 35.0408635 0.0006036704 6.486609e-06 4.500856e-05 8 102299497 102299547 51 - 1.625 1.339 -0.985
ENSG00000104517 E056 58.6986274 0.0037142220 6.259112e-08 6.615543e-07 8 102300000 102300151 152 - 1.850 1.539 -1.056
ENSG00000104517 E057 8.8818858 0.0019586724 5.143334e-05 2.889048e-04 8 102302271 102302481 211 - 1.110 0.584 -2.064
ENSG00000104517 E058 58.0446454 0.0019389430 2.394561e-08 2.749181e-07 8 102304043 102304166 124 - 1.841 1.539 -1.022
ENSG00000104517 E059 28.2807928 0.0072367702 3.749041e-07 3.399112e-06 8 102304167 102304169 3 - 1.563 1.124 -1.531
ENSG00000104517 E060 80.9098479 0.0005171370 1.895273e-17 8.953959e-16 8 102305085 102305295 211 - 2.001 1.615 -1.303
ENSG00000104517 E061 75.4366569 0.0023323950 5.271943e-10 8.224258e-09 8 102311299 102311496 198 - 1.954 1.645 -1.044
ENSG00000104517 E062 57.8326907 0.0291469550 5.294526e-04 2.269714e-03 8 102311735 102311889 155 - 1.842 1.531 -1.057
ENSG00000104517 E063 49.9225695 0.0625679267 5.532889e-03 1.737369e-02 8 102312134 102312245 112 - 1.783 1.450 -1.136
ENSG00000104517 E064 55.7595458 0.0198816172 2.366280e-04 1.119117e-03 8 102312342 102312485 144 - 1.824 1.519 -1.038
ENSG00000104517 E065 58.7434967 0.0221336629 4.901225e-06 3.495811e-05 8 102313804 102313916 113 - 1.867 1.469 -1.352
ENSG00000104517 E066 53.2593899 0.0041708579 9.601190e-17 4.139546e-15 8 102314744 102314853 110 - 1.853 1.289 -1.930
ENSG00000104517 E067 61.9149896 0.0175077718 1.340726e-07 1.329198e-06 8 102323311 102323495 185 - 1.895 1.469 -1.447
ENSG00000104517 E068 52.6969012 0.0166738144 3.093790e-06 2.307426e-05 8 102326546 102326663 118 - 1.818 1.439 -1.288
ENSG00000104517 E069 62.2755454 0.0224364797 1.608838e-06 1.277515e-05 8 102327742 102327896 155 - 1.895 1.477 -1.419
ENSG00000104517 E070 49.7228691 0.0020578734 4.041678e-13 1.055097e-11 8 102329090 102329200 111 - 1.806 1.357 -1.532
ENSG00000104517 E071 54.0375991 0.0017309569 1.612811e-12 3.816415e-11 8 102329283 102329399 117 - 1.834 1.424 -1.395
ENSG00000104517 E072 72.3593027 0.0265986209 3.666169e-06 2.691929e-05 8 102342473 102342666 194 - 1.958 1.551 -1.379
ENSG00000104517 E073 20.5384858 0.0965284328 7.671398e-04 3.140338e-03 8 102342667 102342684 18 - 1.449 0.907 -1.938
ENSG00000104517 E074 68.8216644 0.0174393270 8.870969e-08 9.094039e-07 8 102345396 102345545 150 - 1.939 1.515 -1.437
ENSG00000104517 E075 0.1515154 0.0432767170 1.000000e+00   8 102345896 102346235 340 - 0.088 0.000 -9.888
ENSG00000104517 E076 61.8499283 0.0018348541 3.514164e-16 1.410184e-14 8 102346236 102346395 160 - 1.900 1.439 -1.564
ENSG00000104517 E077 55.2599236 0.0034837835 1.215288e-13 3.412878e-12 8 102346903 102347092 190 - 1.852 1.384 -1.593
ENSG00000104517 E078 0.0000000       8 102359652 102360070 419 -      
ENSG00000104517 E079 42.2756685 0.0025975775 6.557010e-13 1.659150e-11 8 102360071 102360190 120 - 1.742 1.245 -1.708
ENSG00000104517 E080 36.7044446 0.0005478721 3.362310e-13 8.870345e-12 8 102360589 102360665 77 - 1.685 1.182 -1.742
ENSG00000104517 E081 39.2849402 0.0005295693 5.275630e-16 2.066265e-14 8 102361125 102361206 82 - 1.724 1.168 -1.921
ENSG00000104517 E082 0.0000000       8 102361207 102361209 3 -      
ENSG00000104517 E083 26.4378858 0.0007155940 6.671148e-11 1.211891e-09 8 102361582 102361626 45 - 1.553 1.019 -1.875
ENSG00000104517 E084 44.3552321 0.0006402448 1.865083e-17 8.826741e-16 8 102412173 102412759 587 - 1.774 1.220 -1.905