ENSG00000104218

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000262210 ENSG00000104218 HEK293_OSMI2_2hA HEK293_TMG_2hB CSPP1 protein_coding protein_coding 9.217612 2.591636 13.35339 0.2968571 0.2767967 2.360794 0.61679592 0.4496433 1.86141958 0.128389363 0.47121481 2.025547 0.075066667 0.17123333 0.138333333 -0.03290000 8.421346e-01 1.156223e-12 FALSE TRUE
ENST00000676317 ENSG00000104218 HEK293_OSMI2_2hA HEK293_TMG_2hB CSPP1 protein_coding protein_coding 9.217612 2.591636 13.35339 0.2968571 0.2767967 2.360794 1.27108456 0.4864669 1.36952832 0.265073669 0.73710565 1.474406 0.164166667 0.21423333 0.103700000 -0.11053333 8.911437e-01 1.156223e-12 FALSE TRUE
ENST00000677619 ENSG00000104218 HEK293_OSMI2_2hA HEK293_TMG_2hB CSPP1 protein_coding protein_coding 9.217612 2.591636 13.35339 0.2968571 0.2767967 2.360794 0.25163697 0.0000000 0.72225324 0.000000000 0.51093151 6.194271 0.024287500 0.00000000 0.054400000 0.05440000 5.061051e-01 1.156223e-12 FALSE TRUE
ENST00000677938 ENSG00000104218 HEK293_OSMI2_2hA HEK293_TMG_2hB CSPP1 protein_coding retained_intron 9.217612 2.591636 13.35339 0.2968571 0.2767967 2.360794 0.51095705 0.1712647 0.72348160 0.005724768 0.03293858 2.016663 0.063604167 0.06776667 0.054266667 -0.01350000 7.350173e-01 1.156223e-12   FALSE
ENST00000678362 ENSG00000104218 HEK293_OSMI2_2hA HEK293_TMG_2hB CSPP1 protein_coding nonsense_mediated_decay 9.217612 2.591636 13.35339 0.2968571 0.2767967 2.360794 1.33285581 0.0000000 2.59599299 0.000000000 0.22804357 8.025689 0.111250000 0.00000000 0.193833333 0.19383333 1.156223e-12 1.156223e-12 FALSE TRUE
ENST00000678645 ENSG00000104218 HEK293_OSMI2_2hA HEK293_TMG_2hB CSPP1 protein_coding protein_coding 9.217612 2.591636 13.35339 0.2968571 0.2767967 2.360794 0.02456059 0.1964847 0.00000000 0.196484685 0.00000000 -4.367963 0.007741667 0.06193333 0.000000000 -0.06193333 4.849539e-01 1.156223e-12 FALSE TRUE
ENST00000678723 ENSG00000104218 HEK293_OSMI2_2hA HEK293_TMG_2hB CSPP1 protein_coding nonsense_mediated_decay 9.217612 2.591636 13.35339 0.2968571 0.2767967 2.360794 0.09460477 0.2120187 0.06835994 0.212018672 0.04619554 -1.502493 0.017754167 0.08816667 0.005233333 -0.08293333 8.595742e-01 1.156223e-12 TRUE TRUE
ENST00000679060 ENSG00000104218 HEK293_OSMI2_2hA HEK293_TMG_2hB CSPP1 protein_coding retained_intron 9.217612 2.591636 13.35339 0.2968571 0.2767967 2.360794 1.10983117 0.1070908 1.40419125 0.055711567 0.61066040 3.594278 0.106966667 0.03823333 0.105566667 0.06733333 7.000749e-01 1.156223e-12 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000104218 E001 0.0000000       8 67062417 67062425 9 +      
ENSG00000104218 E002 1.3683431 0.0097798154 5.291831e-01 6.620057e-01 8 67062426 67062520 95 + 0.346 0.230 -0.804
ENSG00000104218 E003 0.2924217 0.0273138179 1.000000e+00   8 67064093 67064315 223 + 0.115 0.000 -12.209
ENSG00000104218 E004 0.2903454 0.3353841232 1.000000e+00   8 67064316 67064335 20 + 0.115 0.000 -11.939
ENSG00000104218 E005 0.1451727 0.0430855694 1.000000e+00   8 67064336 67064339 4 + 0.061 0.000 -11.261
ENSG00000104218 E006 0.2903454 0.3353841232 1.000000e+00   8 67064340 67064345 6 + 0.115 0.000 -11.939
ENSG00000104218 E007 0.2903454 0.3353841232 1.000000e+00   8 67064346 67064347 2 + 0.115 0.000 -11.939
ENSG00000104218 E008 0.2903454 0.3353841232 1.000000e+00   8 67064348 67064361 14 + 0.115 0.000 -11.939
ENSG00000104218 E009 0.4418608 0.0257106580 6.563157e-01 7.659477e-01 8 67064362 67064367 6 + 0.163 0.000 -12.744
ENSG00000104218 E010 0.4418608 0.0257106580 6.563157e-01 7.659477e-01 8 67064368 67064369 2 + 0.163 0.000 -12.744
ENSG00000104218 E011 0.5891098 0.0183414571 4.481135e-01 5.894253e-01 8 67064370 67064374 5 + 0.206 0.000 -13.112
ENSG00000104218 E012 0.7363589 0.0155812989 3.223721e-01 4.656736e-01 8 67064375 67064377 3 + 0.246 0.000 -13.392
ENSG00000104218 E013 1.9197753 0.0070673737 2.556118e-01 3.925144e-01 8 67064378 67064387 10 + 0.451 0.230 -1.389
ENSG00000104218 E014 1.9197753 0.0070673737 2.556118e-01 3.925144e-01 8 67064388 67064390 3 + 0.451 0.230 -1.389
ENSG00000104218 E015 1.9197753 0.0070673737 2.556118e-01 3.925144e-01 8 67064391 67064391 1 + 0.451 0.230 -1.389
ENSG00000104218 E016 3.4708419 0.0097697789 1.775073e-01 2.980142e-01 8 67064392 67064398 7 + 0.622 0.379 -1.196
ENSG00000104218 E017 4.2489293 0.0467719304 5.747965e-01 7.005454e-01 8 67064399 67064403 5 + 0.667 0.578 -0.391
ENSG00000104218 E018 6.8759423 0.0236049573 8.582883e-01 9.125645e-01 8 67064404 67064422 19 + 0.821 0.817 -0.016
ENSG00000104218 E019 7.3564111 0.0370006434 9.841149e-01 9.941589e-01 8 67064423 67064425 3 + 0.841 0.861 0.078
ENSG00000104218 E020 7.5036601 0.0443820889 9.440667e-01 9.689545e-01 8 67064426 67064427 2 + 0.850 0.861 0.041
ENSG00000104218 E021 18.3005980 0.0128217475 7.090735e-01 8.065508e-01 8 67064428 67064454 27 + 1.205 1.193 -0.043
ENSG00000104218 E022 21.3651923 0.0032392156 7.491971e-01 8.362129e-01 8 67064455 67064496 42 + 1.267 1.265 -0.006
ENSG00000104218 E023 10.5881399 0.0016823184 1.769188e-01 2.972356e-01 8 67064497 67064524 28 + 1.012 0.861 -0.565
ENSG00000104218 E024 6.1419759 0.0026447749 5.171815e-01 6.516308e-01 8 67064525 67064526 2 + 0.790 0.714 -0.306
ENSG00000104218 E025 7.0404593 0.0024674924 2.902082e-01 4.309988e-01 8 67064527 67064538 12 + 0.850 0.714 -0.541
ENSG00000104218 E026 0.0000000       8 67069680 67069802 123 +      
ENSG00000104218 E027 0.0000000       8 67072940 67074242 1303 +      
ENSG00000104218 E028 35.2232021 0.0005827041 1.942563e-01 3.190871e-01 8 67074243 67074351 109 + 1.484 1.416 -0.234
ENSG00000104218 E029 1.9220646 0.0565437400 8.615242e-01 9.146823e-01 8 67074806 67074923 118 + 0.401 0.381 -0.114
ENSG00000104218 E030 15.5048425 0.0011376296 1.052994e-01 1.985495e-01 8 67076482 67076487 6 + 1.158 1.003 -0.562
ENSG00000104218 E031 35.4573618 0.0023668955 2.034229e-03 7.332862e-03 8 67076488 67076581 94 + 1.509 1.282 -0.788
ENSG00000104218 E032 0.1515154 0.0426993530 1.000000e+00   8 67078367 67078487 121 + 0.061 0.000 -11.262
ENSG00000104218 E033 0.0000000       8 67079351 67079462 112 +      
ENSG00000104218 E034 0.0000000       8 67083848 67083914 67 +      
ENSG00000104218 E035 0.0000000       8 67083915 67084338 424 +      
ENSG00000104218 E036 40.4774705 0.0005310697 1.295894e-02 3.581479e-02 8 67086007 67086110 104 + 1.556 1.405 -0.520
ENSG00000104218 E037 0.0000000       8 67086111 67086331 221 +      
ENSG00000104218 E038 0.0000000       8 67086823 67086846 24 +      
ENSG00000104218 E039 13.2589378 0.0116654192 8.572178e-02 1.685494e-01 8 67091803 67091883 81 + 1.104 0.902 -0.748
ENSG00000104218 E040 0.4418608 0.0257106580 6.563157e-01 7.659477e-01 8 67092398 67093524 1127 + 0.163 0.000 -12.744
ENSG00000104218 E041 0.2966881 0.0269467327 1.000000e+00   8 67093525 67093542 18 + 0.115 0.000 -12.209
ENSG00000104218 E042 17.5153597 0.0012223280 6.334017e-04 2.656367e-03 8 67093543 67093547 5 + 1.241 0.861 -1.389
ENSG00000104218 E043 33.1313354 0.0008210988 2.687456e-03 9.336704e-03 8 67093548 67093641 94 + 1.484 1.265 -0.760
ENSG00000104218 E044 80.8381812 0.0015761513 9.266799e-05 4.875899e-04 8 67095293 67095732 440 + 1.858 1.672 -0.630
ENSG00000104218 E045 4.9355444 0.0141727871 3.084488e-01 4.507389e-01 8 67095733 67097393 1661 + 0.733 0.577 -0.666
ENSG00000104218 E046 0.4439371 0.0215636205 6.540570e-01 7.643567e-01 8 67099188 67099301 114 + 0.163 0.000 -12.743
ENSG00000104218 E047 5.4319198 0.0960117866 7.462091e-01 8.340339e-01 8 67099302 67101239 1938 + 0.746 0.708 -0.157
ENSG00000104218 E048 4.3884672 0.0156066158 7.373814e-02 1.495084e-01 8 67101240 67102448 1209 + 0.708 0.379 -1.560
ENSG00000104218 E049 1.2639554 0.0102971717 6.754543e-01 7.807460e-01 8 67102449 67102888 440 + 0.282 0.379 0.611
ENSG00000104218 E050 0.5858876 0.0212862683 7.567514e-01 8.417992e-01 8 67102889 67103036 148 + 0.163 0.229 0.610
ENSG00000104218 E051 31.3114018 0.0006569660 4.795538e-03 1.536212e-02 8 67103037 67103135 99 + 1.457 1.248 -0.727
ENSG00000104218 E052 0.0000000       8 67105569 67105661 93 +      
ENSG00000104218 E053 28.6878585 0.0006974809 2.206428e-02 5.581609e-02 8 67105905 67105975 71 + 1.416 1.248 -0.585
ENSG00000104218 E054 0.0000000       8 67110651 67111273 623 +      
ENSG00000104218 E055 32.8699719 0.0006054469 3.280402e-01 4.714942e-01 8 67111972 67112065 94 + 1.450 1.405 -0.158
ENSG00000104218 E056 0.6600969 0.0686008828 1.767576e-01 2.970241e-01 8 67112066 67112075 10 + 0.115 0.379 2.198
ENSG00000104218 E057 0.0000000       8 67113652 67113804 153 +      
ENSG00000104218 E058 17.0437117 0.0154058803 6.831104e-01 7.864150e-01 8 67113805 67113817 13 + 1.175 1.154 -0.074
ENSG00000104218 E059 22.9631310 0.0012745470 4.401381e-01 5.818314e-01 8 67113818 67113862 45 + 1.274 1.367 0.326
ENSG00000104218 E060 0.1472490 0.0433962541 1.000000e+00   8 67113863 67114328 466 + 0.061 0.000 -11.261
ENSG00000104218 E061 0.0000000       8 67114329 67114370 42 +      
ENSG00000104218 E062 0.1515154 0.0426993530 1.000000e+00   8 67114371 67115196 826 + 0.061 0.000 -11.262
ENSG00000104218 E063 0.0000000       8 67115197 67115264 68 +      
ENSG00000104218 E064 0.2987644 0.0272654560 1.000000e+00   8 67115265 67115913 649 + 0.115 0.000 -12.209
ENSG00000104218 E065 42.0352236 0.0005597227 8.390729e-01 8.994343e-01 8 67115914 67116122 209 + 1.537 1.579 0.143
ENSG00000104218 E066 23.9147774 0.0074792932 5.450757e-02 1.171305e-01 8 67118248 67118305 58 + 1.342 1.174 -0.590
ENSG00000104218 E067 27.1353519 0.0044770015 1.663026e-01 2.833868e-01 8 67118306 67118369 64 + 1.379 1.282 -0.339
ENSG00000104218 E068 0.4375944 0.0266584985 6.559113e-01 7.657068e-01 8 67118370 67118385 16 + 0.163 0.000 -12.743
ENSG00000104218 E069 14.9010967 0.0021657816 3.802685e-01 5.245594e-01 8 67118743 67118751 9 + 1.129 1.059 -0.254
ENSG00000104218 E070 25.2394654 0.0015068800 1.020412e-01 1.936277e-01 8 67118752 67118821 70 + 1.351 1.231 -0.419
ENSG00000104218 E071 0.8889184 0.0135312276 9.019796e-01 9.415455e-01 8 67120879 67121130 252 + 0.246 0.229 -0.127
ENSG00000104218 E072 0.1817044 0.0398124902 9.775704e-02   8 67123088 67123159 72 + 0.000 0.230 13.946
ENSG00000104218 E073 0.0000000       8 67131045 67131236 192 +      
ENSG00000104218 E074 20.4023593 0.0117518443 9.765717e-02 1.869170e-01 8 67131951 67131960 10 + 1.270 1.110 -0.569
ENSG00000104218 E075 40.5357794 0.0064388587 2.929079e-03 1.005554e-02 8 67131961 67132080 120 + 1.565 1.342 -0.767
ENSG00000104218 E076 0.5933762 0.0218948556 4.496544e-01 5.908492e-01 8 67134024 67134165 142 + 0.206 0.000 -13.113
ENSG00000104218 E077 45.3779514 0.0006104815 2.395000e-02 5.970073e-02 8 67137456 67137603 148 + 1.596 1.471 -0.429
ENSG00000104218 E078 0.6633060 0.0220034616 7.546777e-01 8.402571e-01 8 67137604 67139040 1437 + 0.163 0.230 0.613
ENSG00000104218 E079 0.2214452 0.0379395120 9.748427e-02   8 67139077 67139334 258 + 0.000 0.230 13.958
ENSG00000104218 E080 41.4040570 0.0029464407 4.278640e-01 5.706831e-01 8 67149783 67149935 153 + 1.539 1.511 -0.095
ENSG00000104218 E081 0.3268771 0.0293443730 2.899813e-01   8 67152613 67152712 100 + 0.061 0.230 2.197
ENSG00000104218 E082 0.3686942 0.0295370647 2.902274e-01 4.310092e-01 8 67152925 67154023 1099 + 0.061 0.230 2.199
ENSG00000104218 E083 38.4169237 0.0005722238 2.399249e-01 3.740500e-01 8 67154024 67154136 113 + 1.516 1.461 -0.189
ENSG00000104218 E084 6.4730943 0.0025403662 2.226220e-01 3.535300e-01 8 67154877 67157626 2750 + 0.821 0.652 -0.691
ENSG00000104218 E085 0.4460135 0.0321955684 6.553427e-01 7.652410e-01 8 67157627 67157857 231 + 0.163 0.000 -12.744
ENSG00000104218 E086 1.0224378 0.1472537497 2.276131e-01 3.595452e-01 8 67157858 67158237 380 + 0.314 0.000 -13.749
ENSG00000104218 E087 0.8815316 0.0132069187 2.382484e-01 3.721019e-01 8 67158238 67158446 209 + 0.281 0.000 -13.616
ENSG00000104218 E088 40.6711904 0.0009556434 2.710654e-01 4.097614e-01 8 67158447 67158596 150 + 1.539 1.491 -0.165
ENSG00000104218 E089 15.8447478 0.0086900911 1.046621e-01 1.976074e-01 8 67158991 67158995 5 + 1.171 1.003 -0.610
ENSG00000104218 E090 37.9645349 0.0048702501 3.147952e-01 4.575390e-01 8 67158996 67159137 142 + 1.512 1.461 -0.175
ENSG00000104218 E091 36.4007869 0.0005663501 8.018047e-01 8.737178e-01 8 67161811 67161915 105 + 1.473 1.519 0.158
ENSG00000104218 E092 0.1472490 0.0433962541 1.000000e+00   8 67162638 67162762 125 + 0.061 0.000 -11.261
ENSG00000104218 E093 30.4070499 0.0048561793 3.455721e-01 4.896861e-01 8 67163732 67163798 67 + 1.387 1.491 0.356
ENSG00000104218 E094 0.0000000       8 67163799 67164237 439 +      
ENSG00000104218 E095 38.2410317 0.0007072998 7.183476e-02 1.463919e-01 8 67164391 67164508 118 + 1.471 1.617 0.500
ENSG00000104218 E096 6.4868370 0.0051827374 4.355310e-01 5.777591e-01 8 67164509 67166342 1834 + 0.811 0.715 -0.388
ENSG00000104218 E097 0.4439371 0.0215636205 6.540570e-01 7.643567e-01 8 67172206 67172415 210 + 0.163 0.000 -12.743
ENSG00000104218 E098 27.1074971 0.0008092777 2.707045e-01 4.093432e-01 8 67172416 67172462 47 + 1.336 1.450 0.394
ENSG00000104218 E099 34.4910460 0.0008066487 4.501368e-02 1.002281e-01 8 67172463 67172555 93 + 1.421 1.587 0.567
ENSG00000104218 E100 0.7500885 0.1173044396 9.637109e-01 9.811012e-01 8 67172769 67172777 9 + 0.207 0.228 0.183
ENSG00000104218 E101 1.6702280 0.0129506410 9.489008e-01 9.719467e-01 8 67172778 67172864 87 + 0.374 0.379 0.025
ENSG00000104218 E102 2.1777522 0.0064516380 8.162391e-01 8.837241e-01 8 67172865 67172973 109 + 0.427 0.490 0.322
ENSG00000104218 E103 0.0000000       8 67174823 67175295 473 +      
ENSG00000104218 E104 41.8886738 0.0100512077 8.378112e-03 2.473366e-02 8 67175296 67175436 141 + 1.484 1.715 0.788
ENSG00000104218 E105 28.8585751 0.0066005673 2.051624e-01 3.326218e-01 8 67177680 67177726 47 + 1.357 1.491 0.462
ENSG00000104218 E106 34.9297745 0.0204266947 1.301642e-01 2.343966e-01 8 67179863 67179926 64 + 1.427 1.595 0.575
ENSG00000104218 E107 0.2987644 0.0272654560 1.000000e+00   8 67189386 67189839 454 + 0.115 0.000 -12.209
ENSG00000104218 E108 0.2998086 0.0296056975 2.908166e-01   8 67189840 67190014 175 + 0.061 0.229 2.193
ENSG00000104218 E109 0.1451727 0.0430855694 1.000000e+00   8 67190015 67190649 635 + 0.061 0.000 -11.261
ENSG00000104218 E110 46.6171703 0.0095020401 5.297512e-03 1.674198e-02 8 67190650 67190759 110 + 1.530 1.759 0.780
ENSG00000104218 E111 3.5704090 0.1027970039 5.604921e-01 6.884898e-01 8 67190760 67190944 185 + 0.607 0.492 -0.533
ENSG00000104218 E112 14.8682903 0.0108998941 1.704408e-01 2.887296e-01 8 67191194 67192097 904 + 1.144 1.002 -0.513
ENSG00000104218 E113 3.4375535 0.0141702003 2.990932e-01 4.405747e-01 8 67192098 67192217 120 + 0.516 0.716 0.879
ENSG00000104218 E114 6.6558559 0.0024569866 6.541979e-01 7.644583e-01 8 67192218 67192626 409 + 0.811 0.769 -0.166
ENSG00000104218 E115 2.7107611 0.0093243339 6.419858e-01 7.549115e-01 8 67192627 67192688 62 + 0.474 0.579 0.496
ENSG00000104218 E116 5.1189412 0.0033191586 4.139540e-02 9.361626e-02 8 67192689 67192803 115 + 0.622 0.938 1.264
ENSG00000104218 E117 10.0303864 0.0117940063 2.906901e-01 4.315014e-01 8 67192804 67193463 660 + 0.927 1.084 0.580
ENSG00000104218 E118 50.2927431 0.0010263015 5.155036e-05 2.894934e-04 8 67193464 67193602 139 + 1.554 1.809 0.865
ENSG00000104218 E119 0.5891098 0.0183414571 4.481135e-01 5.894253e-01 8 67194627 67194718 92 + 0.206 0.000 -13.112
ENSG00000104218 E120 122.3557577 0.0113192892 2.849594e-14 8.762328e-13 8 67195382 67196778 1397 + 1.854 2.322 1.567