ENSG00000104133

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000261866 ENSG00000104133 HEK293_OSMI2_2hA HEK293_TMG_2hB SPG11 protein_coding protein_coding 5.644978 3.973362 6.615636 0.09916624 0.1767705 0.7340723 2.1502372 0.9341074 2.3579099 0.31959467 0.35594992 1.3265913 0.36462917 0.23193333 0.35430000 0.12236667 4.337811e-01 3.612706e-14 FALSE TRUE
ENST00000558080 ENSG00000104133 HEK293_OSMI2_2hA HEK293_TMG_2hB SPG11 protein_coding retained_intron 5.644978 3.973362 6.615636 0.09916624 0.1767705 0.7340723 0.4627624 0.4562442 0.1725184 0.04300365 0.08681601 -1.3530435 0.09008333 0.11456667 0.02616667 -0.08840000 6.958269e-02 3.612706e-14   FALSE
ENST00000558138 ENSG00000104133 HEK293_OSMI2_2hA HEK293_TMG_2hB SPG11 protein_coding protein_coding 5.644978 3.973362 6.615636 0.09916624 0.1767705 0.7340723 0.4615974 0.8574153 0.0000000 0.13388154 0.00000000 -6.4386509 0.10109583 0.21653333 0.00000000 -0.21653333 3.612706e-14 3.612706e-14 FALSE TRUE
ENST00000560299 ENSG00000104133 HEK293_OSMI2_2hA HEK293_TMG_2hB SPG11 protein_coding retained_intron 5.644978 3.973362 6.615636 0.09916624 0.1767705 0.7340723 0.4382744 0.6326926 0.3192273 0.16137827 0.05616393 -0.9650447 0.07218750 0.15806667 0.04796667 -0.11010000 1.120288e-02 3.612706e-14   FALSE
ENST00000682065 ENSG00000104133 HEK293_OSMI2_2hA HEK293_TMG_2hB SPG11 protein_coding protein_coding 5.644978 3.973362 6.615636 0.09916624 0.1767705 0.7340723 0.1849305 0.0000000 0.9236819 0.00000000 0.46240123 6.5448592 0.03260417 0.00000000 0.14320000 0.14320000 6.881297e-04 3.612706e-14 FALSE TRUE
ENST00000683753 ENSG00000104133 HEK293_OSMI2_2hA HEK293_TMG_2hB SPG11 protein_coding retained_intron 5.644978 3.973362 6.615636 0.09916624 0.1767705 0.7340723 0.2385475 0.3145917 0.0000000 0.18452126 0.00000000 -5.0205540 0.05296250 0.08156667 0.00000000 -0.08156667 1.032389e-01 3.612706e-14 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000104133 E001 0.0000000       15 44554818 44555209 392 -      
ENSG00000104133 E002 0.6599951 0.0178439081 4.230084e-03 1.378594e-02 15 44562696 44562696 1 - 0.000 0.472 16.023
ENSG00000104133 E003 0.8082883 0.0182702086 1.242540e-03 4.785045e-03 15 44562697 44562715 19 - 0.000 0.538 16.398
ENSG00000104133 E004 14.2191169 0.1040813952 5.741220e-03 1.793127e-02 15 44562716 44562853 138 - 0.930 1.424 1.768
ENSG00000104133 E005 51.5688816 0.0152397555 5.910934e-07 5.156844e-06 15 44562854 44563120 267 - 1.530 1.915 1.305
ENSG00000104133 E006 23.2138943 0.0008373501 2.011824e-08 2.344863e-07 15 44563121 44563131 11 - 1.182 1.584 1.396
ENSG00000104133 E007 34.3656697 0.0006541469 1.176418e-10 2.052766e-09 15 44563132 44563246 115 - 1.357 1.741 1.315
ENSG00000104133 E008 13.8059811 0.0013390326 7.879031e-04 3.215967e-03 15 44563247 44563251 5 - 1.020 1.326 1.090
ENSG00000104133 E009 19.3804361 0.0016259013 1.531350e-04 7.609635e-04 15 44563252 44563301 50 - 1.163 1.463 1.047
ENSG00000104133 E010 12.0186824 0.0014506105 5.882816e-04 2.490685e-03 15 44564547 44564552 6 - 0.953 1.283 1.192
ENSG00000104133 E011 31.7338429 0.0048955103 2.496433e-08 2.855756e-07 15 44564553 44564698 146 - 1.323 1.708 1.323
ENSG00000104133 E012 32.9764860 0.0041105771 9.416747e-06 6.297322e-05 15 44565854 44565965 112 - 1.388 1.686 1.020
ENSG00000104133 E013 23.0609696 0.0008563739 6.574990e-03 2.012167e-02 15 44565966 44566009 44 - 1.286 1.484 0.689
ENSG00000104133 E014 1.7693146 0.0078076577 3.067343e-01 4.489214e-01 15 44566010 44566144 135 - 0.360 0.539 0.929
ENSG00000104133 E015 25.5508397 0.0008898000 5.839058e-02 1.238709e-01 15 44566217 44566305 89 - 1.357 1.491 0.464
ENSG00000104133 E016 0.1472490 0.0430853088 1.000000e+00   15 44567338 44567423 86 - 0.085 0.000 -11.970
ENSG00000104133 E017 32.4898063 0.0008409761 6.395807e-03 1.965236e-02 15 44567424 44567592 169 - 1.439 1.611 0.589
ENSG00000104133 E018 23.5664066 0.0007847543 4.182256e-02 9.440199e-02 15 44569398 44569505 108 - 1.314 1.463 0.517
ENSG00000104133 E019 18.5972821 0.0018944927 2.018483e-02 5.186922e-02 15 44570525 44570552 28 - 1.200 1.391 0.667
ENSG00000104133 E020 29.5379229 0.0007088643 1.956766e-02 5.055820e-02 15 44570553 44570652 100 - 1.407 1.561 0.529
ENSG00000104133 E021 16.3421237 0.0011615412 8.873147e-02 1.731820e-01 15 44570653 44570658 6 - 1.157 1.305 0.524
ENSG00000104133 E022 2.2851576 0.1705153289 4.461018e-01 5.876361e-01 15 44572469 44572682 214 - 0.434 0.636 0.954
ENSG00000104133 E023 31.2983496 0.0006633619 2.635495e-03 9.176206e-03 15 44572683 44572820 138 - 1.414 1.606 0.656
ENSG00000104133 E024 0.4427912 0.1589772830 9.209740e-01 9.541215e-01 15 44572821 44572824 4 - 0.155 0.172 0.180
ENSG00000104133 E025 0.5933762 0.0249814277 1.854592e-01 3.080774e-01 15 44573119 44573356 238 - 0.270 0.000 -13.970
ENSG00000104133 E026 0.1451727 0.0431940645 1.000000e+00   15 44573357 44573357 1 - 0.085 0.000 -11.969
ENSG00000104133 E027 0.1451727 0.0431940645 1.000000e+00   15 44573358 44573368 11 - 0.085 0.000 -11.969
ENSG00000104133 E028 4.4158006 0.0036420367 6.409960e-05 3.515263e-04 15 44573369 44573546 178 - 0.435 0.994 2.362
ENSG00000104133 E029 40.2198707 0.0005241518 3.325942e-05 1.955889e-04 15 44573547 44573745 199 - 1.496 1.730 0.794
ENSG00000104133 E030 1.2126579 0.3681814101 5.665493e-02 1.208561e-01 15 44573746 44573820 75 - 0.085 0.561 3.620
ENSG00000104133 E031 28.1773533 0.0135659164 1.280557e-02 3.545817e-02 15 44574902 44575041 140 - 1.357 1.572 0.742
ENSG00000104133 E032 2.0647420 0.2176618574 1.373093e-01 2.443277e-01 15 44575042 44575272 231 - 0.317 0.684 1.834
ENSG00000104133 E033 25.7017863 0.0007803838 1.450516e-02 3.937523e-02 15 44583814 44583935 122 - 1.340 1.512 0.592
ENSG00000104133 E034 32.2431905 0.0006323791 4.996634e-03 1.591937e-02 15 44583936 44584164 229 - 1.429 1.606 0.608
ENSG00000104133 E035 22.8948970 0.0008461562 7.944600e-02 1.586533e-01 15 44584165 44584258 94 - 1.309 1.440 0.455
ENSG00000104133 E036 26.7672781 0.0007153584 3.517795e-01 4.960001e-01 15 44584259 44584414 156 - 1.396 1.463 0.231
ENSG00000104133 E037 24.8522936 0.0300821975 2.077846e-01 3.358088e-01 15 44584415 44584558 144 - 1.332 1.471 0.479
ENSG00000104133 E038 12.9438135 0.0016467372 6.775230e-01 7.822262e-01 15 44585636 44585651 16 - 1.130 1.091 -0.141
ENSG00000104133 E039 26.8029324 0.0007607806 7.862306e-01 8.630973e-01 15 44585652 44585761 110 - 1.425 1.408 -0.058
ENSG00000104133 E040 22.9592011 0.0230250976 4.816046e-01 6.198060e-01 15 44585762 44585837 76 - 1.323 1.399 0.264
ENSG00000104133 E041 15.4357664 0.0193189219 6.849173e-01 7.877387e-01 15 44585838 44585850 13 - 1.170 1.216 0.163
ENSG00000104133 E042 0.1472490 0.0430853088 1.000000e+00   15 44588567 44588638 72 - 0.085 0.000 -11.970
ENSG00000104133 E043 29.6269487 0.0008101418 9.765889e-01 9.893734e-01 15 44589252 44589414 163 - 1.459 1.463 0.015
ENSG00000104133 E044 0.2966881 0.0271586301 5.343180e-01   15 44590421 44590937 517 - 0.156 0.000 -12.970
ENSG00000104133 E045 24.9475234 0.0009621023 2.142736e-01 3.435759e-01 15 44592331 44592438 108 - 1.357 1.448 0.316
ENSG00000104133 E046 39.1464518 0.0006482591 8.451154e-01 9.036471e-01 15 44595259 44595459 201 - 1.587 1.578 -0.030
ENSG00000104133 E047 0.7459213 0.5826997914 5.443039e-01 6.747904e-01 15 44596060 44596082 23 - 0.156 0.311 1.274
ENSG00000104133 E048 46.0083835 0.0004906353 2.271394e-02 5.715958e-02 15 44596083 44596355 273 - 1.692 1.567 -0.425
ENSG00000104133 E049 13.4010815 0.0013086910 1.265993e-02 3.511031e-02 15 44596784 44596803 20 - 1.206 0.948 -0.936
ENSG00000104133 E050 26.4842932 0.0007746370 1.200334e-01 2.200350e-01 15 44596804 44596943 140 - 1.456 1.345 -0.382
ENSG00000104133 E051 0.0000000       15 44596944 44597172 229 -      
ENSG00000104133 E052 0.2214452 0.0398534766 2.120391e-01   15 44597385 44598264 880 - 0.000 0.174 14.084
ENSG00000104133 E053 20.8143442 0.0187994521 1.940788e-01 3.189084e-01 15 44598265 44598353 89 - 1.361 1.224 -0.479
ENSG00000104133 E054 13.5803193 0.0128307963 1.489816e-01 2.602908e-01 15 44598354 44598373 20 - 1.194 1.035 -0.574
ENSG00000104133 E055 0.3030308 0.3542910885 6.414462e-01   15 44598374 44598630 257 - 0.156 0.000 -12.976
ENSG00000104133 E056 26.1089908 0.0008256427 7.975661e-02 1.591763e-01 15 44598631 44598836 206 - 1.452 1.326 -0.439
ENSG00000104133 E057 0.5954526 0.0183460540 1.837812e-01 3.059580e-01 15 44600260 44600466 207 - 0.270 0.000 -13.970
ENSG00000104133 E058 13.4075631 0.0013561469 4.707819e-02 1.039599e-01 15 44600467 44600498 32 - 1.194 0.994 -0.725
ENSG00000104133 E059 21.4228568 0.0035504805 8.698667e-02 1.705726e-01 15 44600499 44600632 134 - 1.369 1.225 -0.506
ENSG00000104133 E060 0.2966881 0.0271586301 5.343180e-01   15 44601739 44601824 86 - 0.156 0.000 -12.970
ENSG00000104133 E061 0.7061804 0.0978824826 4.324715e-01 5.749141e-01 15 44604105 44604197 93 - 0.156 0.299 1.202
ENSG00000104133 E062 0.9275265 0.0140013980 8.861230e-01 9.311812e-01 15 44604198 44604802 605 - 0.270 0.297 0.191
ENSG00000104133 E063 2.2948097 0.0088171043 6.831199e-01 7.864210e-01 15 44604803 44604927 125 - 0.468 0.539 0.345
ENSG00000104133 E064 13.6095240 0.0101362853 2.381305e-01 3.719687e-01 15 44606025 44606034 10 - 1.182 1.055 -0.457
ENSG00000104133 E065 18.7433343 0.0068312542 2.196993e-02 5.561008e-02 15 44606035 44606091 57 - 1.340 1.123 -0.764
ENSG00000104133 E066 0.2214452 0.0398534766 2.120391e-01   15 44606092 44606158 67 - 0.000 0.174 14.084
ENSG00000104133 E067 26.9159028 0.0007526806 9.206344e-03 2.680037e-02 15 44608444 44608605 162 - 1.484 1.294 -0.658
ENSG00000104133 E068 22.0541313 0.0088979463 8.002826e-02 1.596024e-01 15 44610840 44610917 78 - 1.392 1.236 -0.548
ENSG00000104133 E069 24.1185182 0.0102724705 1.590896e-03 5.929964e-03 15 44610918 44610985 68 - 1.463 1.169 -1.027
ENSG00000104133 E070 23.1353062 0.0008329983 1.228404e-05 7.994140e-05 15 44613430 44613508 79 - 1.459 1.090 -1.296
ENSG00000104133 E071 17.6036569 0.0390806288 8.050231e-03 2.390689e-02 15 44613509 44613536 28 - 1.341 0.994 -1.237
ENSG00000104133 E072 17.6741409 0.1070965467 2.081887e-02 5.320912e-02 15 44615363 44615427 65 - 1.349 0.972 -1.346
ENSG00000104133 E073 25.8818633 0.0007669307 3.971717e-04 1.763452e-03 15 44615428 44615566 139 - 1.484 1.211 -0.951
ENSG00000104133 E074 0.5911862 0.0183785758 1.838249e-01 3.060146e-01 15 44620125 44620189 65 - 0.270 0.000 -13.970
ENSG00000104133 E075 32.9639232 0.0006084203 1.700073e-04 8.351017e-04 15 44620190 44620403 214 - 1.583 1.326 -0.885
ENSG00000104133 E076 0.4439371 0.0215547719 3.038927e-01 4.458660e-01 15 44620404 44621709 1306 - 0.216 0.000 -13.555
ENSG00000104133 E077 0.7802774 0.0156462835 6.594357e-01 7.682556e-01 15 44621710 44621758 49 - 0.216 0.297 0.606
ENSG00000104133 E078 27.4814779 0.0010176684 4.413185e-03 1.430099e-02 15 44621759 44621934 176 - 1.493 1.283 -0.727
ENSG00000104133 E079 16.8109277 0.0023323249 2.026232e-02 5.203519e-02 15 44622220 44622347 128 - 1.290 1.073 -0.774
ENSG00000104133 E080 0.1817044 0.0397428595 2.128315e-01   15 44622348 44622475 128 - 0.000 0.174 14.080
ENSG00000104133 E081 0.6234634 0.0182228357 7.145652e-02 1.457575e-01 15 44622476 44622727 252 - 0.085 0.393 2.775
ENSG00000104133 E082 13.6307834 0.0012640813 1.468344e-01 2.573725e-01 15 44622728 44622799 72 - 1.194 1.054 -0.503
ENSG00000104133 E083 0.2924217 0.0272261350 5.344331e-01   15 44625709 44626330 622 - 0.155 0.000 -12.969
ENSG00000104133 E084 24.4932033 0.0008313004 6.710380e-07 5.783455e-06 15 44626331 44626507 177 - 1.490 1.073 -1.467
ENSG00000104133 E085 0.1482932 0.0414004503 2.139152e-01   15 44627636 44628668 1033 - 0.000 0.173 14.076
ENSG00000104133 E086 27.4940604 0.0077652678 7.981036e-07 6.767751e-06 15 44628669 44628844 176 - 1.544 1.091 -1.587
ENSG00000104133 E087 26.4551446 0.0045264334 8.770383e-05 4.642552e-04 15 44629233 44629388 156 - 1.502 1.170 -1.157
ENSG00000104133 E088 0.1482932 0.0414004503 2.139152e-01   15 44631455 44631536 82 - 0.000 0.173 14.076
ENSG00000104133 E089 0.1472490 0.0430853088 1.000000e+00   15 44633470 44633504 35 - 0.085 0.000 -11.970
ENSG00000104133 E090 25.8029703 0.0227689497 9.642763e-03 2.788627e-02 15 44633505 44633637 133 - 1.478 1.204 -0.954
ENSG00000104133 E091 19.5220416 0.0021821197 2.215869e-04 1.056287e-03 15 44648866 44649011 146 - 1.377 1.035 -1.212
ENSG00000104133 E092 46.8837595 0.0031087407 2.425448e-08 2.782054e-07 15 44651491 44651939 449 - 1.752 1.383 -1.261
ENSG00000104133 E093 0.0000000       15 44651940 44652070 131 -      
ENSG00000104133 E094 23.4644715 0.0591802608 8.568353e-03 2.521003e-02 15 44652129 44652266 138 - 1.463 1.081 -1.345
ENSG00000104133 E095 22.8539425 0.0171660287 5.712248e-03 1.785020e-02 15 44657095 44657263 169 - 1.433 1.142 -1.019
ENSG00000104133 E096 10.4182116 0.0016851931 4.089999e-02 9.270101e-02 15 44657264 44657296 33 - 1.101 0.869 -0.862
ENSG00000104133 E097 25.5351698 0.0017917343 8.340318e-05 4.441082e-04 15 44659079 44659303 225 - 1.487 1.170 -1.109
ENSG00000104133 E098 20.1568262 0.0052344979 8.786756e-06 5.915510e-05 15 44660432 44660616 185 - 1.411 0.972 -1.565
ENSG00000104133 E099 13.8372466 0.0062127773 4.452492e-03 1.440791e-02 15 44663391 44663688 298 - 1.234 0.923 -1.129