ENSG00000092148

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000553700 ENSG00000092148 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD1 protein_coding protein_coding 22.50355 12.0569 28.45579 1.011702 0.4758446 1.238174 3.767118 0.4738608 6.3946004 0.2429933 0.1169034 3.726445 0.12983333 0.03866667 0.22473333 0.18606667 7.693703e-02 4.638193e-17 FALSE TRUE
ENST00000611816 ENSG00000092148 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD1 protein_coding protein_coding 22.50355 12.0569 28.45579 1.011702 0.4758446 1.238174 1.316714 0.0000000 2.5520356 0.0000000 0.2240248 8.001147 0.04781667 0.00000000 0.08986667 0.08986667 4.638193e-17 4.638193e-17 FALSE TRUE
ENST00000692132 ENSG00000092148 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD1 protein_coding retained_intron 22.50355 12.0569 28.45579 1.011702 0.4758446 1.238174 3.453703 4.8103759 1.7603002 0.2970777 0.3432684 -1.445152 0.19991667 0.40603333 0.06156667 -0.34446667 1.027196e-09 4.638193e-17 FALSE TRUE
ENST00000693537 ENSG00000092148 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD1 protein_coding retained_intron 22.50355 12.0569 28.45579 1.011702 0.4758446 1.238174 2.293966 3.8608713 0.3773055 1.4756461 0.3773055 -3.321115 0.15194167 0.30636667 0.01316667 -0.29320000 1.687991e-02 4.638193e-17 FALSE TRUE
MSTRG.9323.16 ENSG00000092148 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD1 protein_coding   22.50355 12.0569 28.45579 1.011702 0.4758446 1.238174 2.273811 0.3464283 4.3749385 0.2058361 0.5275699 3.620873 0.08051250 0.02943333 0.15433333 0.12490000 7.767217e-02 4.638193e-17 FALSE TRUE
MSTRG.9323.24 ENSG00000092148 HEK293_OSMI2_2hA HEK293_TMG_2hB HECTD1 protein_coding   22.50355 12.0569 28.45579 1.011702 0.4758446 1.238174 4.357809 1.0390361 6.3447249 0.2791844 0.2206439 2.598765 0.17087917 0.09060000 0.22293333 0.13233333 3.702062e-02 4.638193e-17 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000092148 E001 0.1482932 0.0412131610 1.076371e-01   14 31100043 31100116 74 - 0.000 0.223 12.198
ENSG00000092148 E002 0.1482932 0.0412131610 1.076371e-01   14 31100117 31100117 1 - 0.000 0.223 15.069
ENSG00000092148 E003 0.2955422 0.0298766760 3.144366e-01   14 31100118 31100118 1 - 0.063 0.223 2.095
ENSG00000092148 E004 0.6685028 0.0177166695 1.851226e-01 3.076320e-01 14 31100119 31100119 1 - 0.119 0.370 2.097
ENSG00000092148 E005 2.5452213 0.0060700205 8.548210e-07 7.204203e-06 14 31100120 31100137 18 - 0.168 0.958 4.096
ENSG00000092148 E006 4.4357606 0.0090033183 4.234957e-07 3.800748e-06 14 31100138 31100146 9 - 0.383 1.117 3.094
ENSG00000092148 E007 21.1902672 0.0439173293 7.551260e-07 6.440499e-06 14 31100147 31100187 41 - 1.019 1.684 2.321
ENSG00000092148 E008 55.6948306 0.0238713932 4.499483e-10 7.108185e-09 14 31100188 31100252 65 - 1.461 2.055 2.012
ENSG00000092148 E009 241.3370157 0.0207768657 1.092025e-10 1.915032e-09 14 31100253 31100596 344 - 2.131 2.640 1.698
ENSG00000092148 E010 83.1291853 0.0057422864 3.379108e-15 1.192927e-13 14 31100597 31100632 36 - 1.698 2.155 1.535
ENSG00000092148 E011 315.3822111 0.0057206649 4.499103e-18 2.288780e-16 14 31100633 31101067 435 - 2.301 2.687 1.288
ENSG00000092148 E012 106.7420506 0.0154139693 1.544492e-04 7.668170e-04 14 31101180 31101223 44 - 1.867 2.162 0.988
ENSG00000092148 E013 153.1529577 0.0029586924 3.259966e-11 6.239552e-10 14 31101224 31101324 101 - 2.022 2.318 0.990
ENSG00000092148 E014 3.2536856 0.0047682475 3.579856e-01 5.023801e-01 14 31101325 31102189 865 - 0.526 0.702 0.775
ENSG00000092148 E015 1.5167500 0.0840485912 9.893356e-01 9.973376e-01 14 31102788 31102915 128 - 0.354 0.369 0.091
ENSG00000092148 E016 182.8648024 0.0003041530 2.689786e-16 1.098926e-14 14 31102916 31103066 151 - 2.108 2.379 0.905
ENSG00000092148 E017 0.4502799 0.0268168132 6.089119e-01 7.285000e-01 14 31103067 31103703 637 - 0.168 0.000 -13.648
ENSG00000092148 E018 158.8193846 0.0010825411 3.339857e-10 5.391325e-09 14 31105383 31105476 94 - 2.057 2.302 0.821
ENSG00000092148 E019 0.5244761 0.2060737263 5.655735e-01 6.926461e-01 14 31105477 31105589 113 - 0.119 0.226 1.114
ENSG00000092148 E020 128.6691485 0.0005854011 5.000020e-10 7.825186e-09 14 31105590 31105668 79 - 1.964 2.216 0.846
ENSG00000092148 E021 0.6611159 0.0190599000 8.022138e-01 8.740036e-01 14 31105669 31105942 274 - 0.168 0.224 0.515
ENSG00000092148 E022 353.2684836 0.0005000649 7.504474e-22 5.867520e-20 14 31106646 31107253 608 - 2.400 2.647 0.825
ENSG00000092148 E023 131.3438832 0.0002686231 9.328079e-07 7.791097e-06 14 31107567 31107704 138 - 1.989 2.191 0.677
ENSG00000092148 E024 0.2903454 0.3208252883 1.000000e+00   14 31109124 31109396 273 - 0.118 0.000 -12.920
ENSG00000092148 E025 179.9467099 0.0003430986 2.405112e-02 5.991810e-02 14 31109397 31109598 202 - 2.152 2.254 0.340
ENSG00000092148 E026 127.3961641 0.0002937626 3.100598e-01 4.524266e-01 14 31112416 31112543 128 - 2.011 2.080 0.230
ENSG00000092148 E027 90.5891633 0.0024678470 1.172728e-01 2.160513e-01 14 31113104 31113189 86 - 1.854 1.961 0.359
ENSG00000092148 E028 116.3202071 0.0012452993 2.272401e-01 3.591087e-01 14 31113277 31113484 208 - 1.967 2.048 0.270
ENSG00000092148 E029 91.7618580 0.0017003980 4.601875e-01 6.002433e-01 14 31113877 31114059 183 - 1.869 1.934 0.218
ENSG00000092148 E030 0.3030308 0.3184031233 1.000000e+00   14 31114060 31114285 226 - 0.119 0.000 -12.933
ENSG00000092148 E031 77.3651123 0.0032104585 9.451824e-01 9.696111e-01 14 31114286 31114340 55 - 1.806 1.831 0.084
ENSG00000092148 E032 2.2906702 0.0063018805 1.781874e-01 2.988779e-01 14 31114341 31115632 1292 - 0.383 0.640 1.250
ENSG00000092148 E033 94.4337621 0.0002938651 2.963936e-01 4.375917e-01 14 31116236 31116320 85 - 1.903 1.887 -0.054
ENSG00000092148 E034 119.4278034 0.0002806049 4.856700e-03 1.553335e-02 14 31116321 31116458 138 - 2.019 1.934 -0.285
ENSG00000092148 E035 0.6696487 0.0186207286 8.019192e-01 8.737840e-01 14 31116459 31116655 197 - 0.168 0.224 0.514
ENSG00000092148 E036 77.3873822 0.0038451803 6.671478e-02 1.379312e-01 14 31119710 31119769 60 - 1.831 1.755 -0.256
ENSG00000092148 E037 106.1546402 0.0015995104 4.203296e-02 9.478090e-02 14 31119770 31119866 97 - 1.963 1.898 -0.216
ENSG00000092148 E038 108.6606562 0.0002589628 1.258923e-01 2.284169e-01 14 31121383 31121505 123 - 1.967 1.934 -0.113
ENSG00000092148 E039 3.2987276 0.0048443062 1.633308e-01 2.795144e-01 14 31121506 31121643 138 - 0.618 0.370 -1.225
ENSG00000092148 E040 42.9510416 0.0005094339 2.687394e-01 4.072298e-01 14 31122914 31122919 6 - 1.574 1.531 -0.146
ENSG00000092148 E041 105.4763786 0.0003044648 5.036399e-03 1.603042e-02 14 31122920 31123047 128 - 1.964 1.871 -0.312
ENSG00000092148 E042 8.4935972 0.0030502117 2.468037e-02 6.122569e-02 14 31123048 31123515 468 - 0.955 0.640 -1.253
ENSG00000092148 E043 3.1140165 0.0067438273 4.367949e-03 1.417113e-02 14 31123516 31123624 109 - 0.634 0.000 -16.321
ENSG00000092148 E044 1.4855169 0.0265194421 7.318112e-02 1.486112e-01 14 31123625 31123670 46 - 0.411 0.000 -15.347
ENSG00000092148 E045 9.2091046 0.0238717848 2.168694e-03 7.745942e-03 14 31126213 31127410 1198 - 1.006 0.481 -2.175
ENSG00000092148 E046 1.3296214 0.0155704259 9.176727e-02 1.778921e-01 14 31127411 31127518 108 - 0.383 0.000 -15.174
ENSG00000092148 E047 2.1047020 0.0068198554 1.806592e-01 3.020159e-01 14 31127519 31127784 266 - 0.484 0.224 -1.603
ENSG00000092148 E048 133.0984454 0.0002224574 2.241589e-04 1.066937e-03 14 31127785 31128006 222 - 2.069 1.954 -0.386
ENSG00000092148 E049 0.7448917 0.0627464673 3.097218e-01 4.520622e-01 14 31128007 31128371 365 - 0.252 0.000 -14.412
ENSG00000092148 E050 0.5997190 0.1418307368 4.593799e-01 5.995491e-01 14 31128372 31128611 240 - 0.212 0.000 -14.074
ENSG00000092148 E051 261.6612125 0.0138621334 1.400069e-03 5.307006e-03 14 31128612 31129307 696 - 2.369 2.203 -0.558
ENSG00000092148 E052 47.1098833 0.0005059298 5.350991e-03 1.688592e-02 14 31129308 31129448 141 - 1.632 1.476 -0.532
ENSG00000092148 E053 3.7781522 0.0057218212 9.918365e-02 1.892345e-01 14 31129449 31131952 2504 - 0.665 0.370 -1.426
ENSG00000092148 E054 120.9877273 0.0043003130 1.251542e-02 3.477165e-02 14 31133238 31133414 177 - 2.025 1.927 -0.328
ENSG00000092148 E055 123.8496615 0.0015935121 3.039151e-07 2.809124e-06 14 31133509 31133675 167 - 2.053 1.843 -0.705
ENSG00000092148 E056 67.7532247 0.0031775156 3.728954e-04 1.669003e-03 14 31134872 31134942 71 - 1.792 1.596 -0.666
ENSG00000092148 E057 123.2171244 0.0012780508 1.002146e-06 8.312536e-06 14 31134943 31135195 253 - 2.046 1.852 -0.653
ENSG00000092148 E058 67.7012880 0.0010263937 2.382884e-02 5.946130e-02 14 31135476 31135541 66 - 1.774 1.677 -0.328
ENSG00000092148 E059 59.4855268 0.0037375969 5.116548e-03 1.624704e-02 14 31135542 31135615 74 - 1.730 1.573 -0.533
ENSG00000092148 E060 81.5424042 0.0003721092 2.736613e-03 9.483130e-03 14 31136531 31136665 135 - 1.860 1.739 -0.407
ENSG00000092148 E061 0.0000000       14 31136666 31136838 173 -      
ENSG00000092148 E062 75.6784862 0.0021526312 3.939665e-05 2.274539e-04 14 31139892 31139997 106 - 1.843 1.631 -0.716
ENSG00000092148 E063 70.5585368 0.0059905698 1.603371e-04 7.933601e-04 14 31141858 31141952 95 - 1.816 1.587 -0.776
ENSG00000092148 E064 88.6190777 0.0003194177 5.992553e-12 1.293167e-10 14 31144111 31144257 147 - 1.928 1.588 -1.151
ENSG00000092148 E065 92.2260205 0.0003037441 2.562853e-16 1.050010e-14 14 31144807 31144941 135 - 1.953 1.531 -1.428
ENSG00000092148 E066 69.9187214 0.0105066502 1.132485e-10 1.981217e-09 14 31148721 31148797 77 - 1.843 1.314 -1.806
ENSG00000092148 E067 109.6638406 0.0231286465 4.326896e-07 3.875183e-06 14 31148897 31149160 264 - 2.027 1.594 -1.465
ENSG00000092148 E068 106.3805493 0.0232271913 1.493904e-07 1.467010e-06 14 31149999 31150221 223 - 2.017 1.555 -1.559
ENSG00000092148 E069 103.2181435 0.0490045316 2.559631e-04 1.200105e-03 14 31156840 31157010 171 - 1.998 1.598 -1.351
ENSG00000092148 E070 71.9409349 0.0340902496 4.161903e-06 3.013991e-05 14 31157165 31157303 139 - 1.851 1.360 -1.675
ENSG00000092148 E071 1.3444969 0.0344271252 9.691654e-02 1.857791e-01 14 31162593 31162619 27 - 0.383 0.000 -15.213
ENSG00000092148 E072 72.2029282 0.0875647713 3.323553e-04 1.509921e-03 14 31168298 31168472 175 - 1.856 1.328 -1.804
ENSG00000092148 E073 0.3729606 0.0298444389 3.121935e-01 4.547308e-01 14 31169156 31169353 198 - 0.063 0.224 2.100
ENSG00000092148 E074 65.2050088 0.0003802016 7.824319e-11 1.405684e-09 14 31169354 31169468 115 - 1.800 1.413 -1.319
ENSG00000092148 E075 56.7264584 0.0005272245 3.889338e-11 7.352059e-10 14 31171861 31171959 99 - 1.747 1.312 -1.492
ENSG00000092148 E076 51.0626104 0.0004141721 1.305752e-13 3.652847e-12 14 31172046 31172122 77 - 1.712 1.160 -1.907
ENSG00000092148 E077 1.0392854 0.0447358943 1.367054e-03 5.199469e-03 14 31172954 31173155 202 - 0.063 0.640 4.417
ENSG00000092148 E078 95.4266586 0.0021668712 4.225344e-11 7.938895e-10 14 31173156 31173377 222 - 1.961 1.616 -1.165
ENSG00000092148 E079 52.9808770 0.0004420527 2.001029e-07 1.916914e-06 14 31173378 31173426 49 - 1.705 1.378 -1.119
ENSG00000092148 E080 97.8690991 0.0002737466 2.919502e-13 7.772497e-12 14 31173525 31173806 282 - 1.969 1.624 -1.167
ENSG00000092148 E081 0.2924217 0.0294301020 1.000000e+00   14 31173807 31174910 1104 - 0.119 0.000 -13.074
ENSG00000092148 E082 55.7247338 0.0010526503 2.004466e-05 1.243053e-04 14 31174911 31175052 142 - 1.717 1.467 -0.854
ENSG00000092148 E083 50.2643590 0.0015285460 3.489464e-05 2.040775e-04 14 31175053 31175138 86 - 1.674 1.414 -0.892
ENSG00000092148 E084 45.7994344 0.0004866076 5.461446e-06 3.854323e-05 14 31178020 31178064 45 - 1.640 1.340 -1.030
ENSG00000092148 E085 82.0440597 0.0009029295 7.584934e-08 7.883163e-07 14 31178065 31178254 190 - 1.885 1.617 -0.905
ENSG00000092148 E086 0.1817044 0.0393685654 1.070258e-01   14 31185602 31185719 118 - 0.000 0.224 15.088
ENSG00000092148 E087 0.1451727 0.0427346069 1.000000e+00   14 31203071 31203636 566 - 0.063 0.000 -12.100
ENSG00000092148 E088 59.9267114 0.0004127456 9.501222e-06 6.348681e-05 14 31205797 31205957 161 - 1.749 1.505 -0.831
ENSG00000092148 E089 0.5891098 0.0184076516 4.130409e-01 5.565808e-01 14 31205958 31206176 219 - 0.212 0.000 -14.038
ENSG00000092148 E090 31.8060011 0.0118753067 4.883788e-04 2.115705e-03 14 31207016 31207390 375 - 1.492 1.161 -1.156
ENSG00000092148 E091 38.1087227 0.0005648909 3.243083e-07 2.979738e-06 14 31207391 31207804 414 - 1.574 1.180 -1.368