ENSG00000092108

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000458591 ENSG00000092108 HEK293_OSMI2_2hA HEK293_TMG_2hB SCFD1 protein_coding protein_coding 30.62459 7.152985 58.47303 0.983905 2.714409 3.029385 6.948394 3.0489981 13.223766 0.38897561 0.5052227 2.113093 0.27231667 0.4525333 0.22776667 -0.22476667 1.870630e-01 6.116468e-26 FALSE TRUE
ENST00000544052 ENSG00000092108 HEK293_OSMI2_2hA HEK293_TMG_2hB SCFD1 protein_coding protein_coding 30.62459 7.152985 58.47303 0.983905 2.714409 3.029385 1.816372 0.4693908 3.320915 0.02699294 0.5934858 2.796644 0.05010000 0.0690000 0.05613333 -0.01286667 7.413067e-01 6.116468e-26 FALSE TRUE
ENST00000554776 ENSG00000092108 HEK293_OSMI2_2hA HEK293_TMG_2hB SCFD1 protein_coding nonsense_mediated_decay 30.62459 7.152985 58.47303 0.983905 2.714409 3.029385 4.411148 0.0000000 8.682009 0.00000000 0.5856141 9.763546 0.09411250 0.0000000 0.14820000 0.14820000 6.116468e-26 6.116468e-26 TRUE FALSE
ENST00000554819 ENSG00000092108 HEK293_OSMI2_2hA HEK293_TMG_2hB SCFD1 protein_coding processed_transcript 30.62459 7.152985 58.47303 0.983905 2.714409 3.029385 12.283768 2.3884115 23.795688 1.23744241 1.6627670 3.311155 0.39477500 0.2983667 0.40610000 0.10773333 8.160243e-01 6.116468e-26 FALSE FALSE
ENST00000555259 ENSG00000092108 HEK293_OSMI2_2hA HEK293_TMG_2hB SCFD1 protein_coding nonsense_mediated_decay 30.62459 7.152985 58.47303 0.983905 2.714409 3.029385 1.829819 0.0000000 4.413562 0.00000000 0.4611301 8.789065 0.04179583 0.0000000 0.07566667 0.07566667 1.648870e-11 6.116468e-26 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000092108 E001 0.8963053 0.1544221307 4.634490e-01 6.032473e-01 14 30622286 30622290 5 + 0.210 0.370 1.112
ENSG00000092108 E002 0.8963053 0.1544221307 4.634490e-01 6.032473e-01 14 30622291 30622295 5 + 0.210 0.370 1.112
ENSG00000092108 E003 1.0414780 0.0663447956 5.587443e-01 6.869476e-01 14 30622296 30622303 8 + 0.249 0.372 0.805
ENSG00000092108 E004 1.7746146 0.0085946469 5.969904e-01 7.188343e-01 14 30622304 30622310 7 + 0.379 0.484 0.552
ENSG00000092108 E005 1.7746146 0.0085946469 5.969904e-01 7.188343e-01 14 30622311 30622311 1 + 0.379 0.484 0.552
ENSG00000092108 E006 1.9261301 0.0082289446 6.998524e-01 7.994654e-01 14 30622312 30622314 3 + 0.407 0.484 0.400
ENSG00000092108 E007 2.3700672 0.0064023512 9.979426e-01 1.000000e+00 14 30622315 30622316 2 + 0.479 0.484 0.022
ENSG00000092108 E008 2.5173162 0.0057729807 9.095718e-01 9.465474e-01 14 30622317 30622318 2 + 0.501 0.484 -0.085
ENSG00000092108 E009 2.5173162 0.0057729807 9.095718e-01 9.465474e-01 14 30622319 30622319 1 + 0.501 0.484 -0.085
ENSG00000092108 E010 2.5173162 0.0057729807 9.095718e-01 9.465474e-01 14 30622320 30622321 2 + 0.501 0.484 -0.085
ENSG00000092108 E011 5.0494960 0.0105540670 2.810638e-01 4.209291e-01 14 30622322 30622326 5 + 0.752 0.571 -0.772
ENSG00000092108 E012 8.0118833 0.0044181929 1.994826e-02 5.137771e-02 14 30622327 30622328 2 + 0.942 0.572 -1.506
ENSG00000092108 E013 9.2727182 0.0032359494 1.972590e-02 5.090789e-02 14 30622329 30622329 1 + 0.993 0.645 -1.373
ENSG00000092108 E014 9.7166553 0.0028985117 1.296128e-02 3.582020e-02 14 30622330 30622331 2 + 1.013 0.645 -1.447
ENSG00000092108 E015 23.1369886 0.0007949552 4.158373e-05 2.386957e-04 14 30622332 30622338 7 + 1.368 0.930 -1.572
ENSG00000092108 E016 64.7952974 0.0005147499 6.637514e-05 3.625676e-04 14 30622339 30622399 61 + 1.775 1.537 -0.808
ENSG00000092108 E017 3.7645233 0.0042137148 2.870803e-02 6.941924e-02 14 30622400 30622462 63 + 0.674 0.226 -2.445
ENSG00000092108 E018 1.0286788 0.1102409187 5.855375e-01 7.092196e-01 14 30627890 30628208 319 + 0.249 0.371 0.802
ENSG00000092108 E019 80.8948108 0.0003217336 9.368793e-05 4.923138e-04 14 30628209 30628279 71 + 1.867 1.663 -0.687
ENSG00000092108 E020 122.6183683 0.0002437003 2.150678e-04 1.028732e-03 14 30630477 30630565 89 + 2.037 1.885 -0.510
ENSG00000092108 E021 0.0000000       14 30630566 30630917 352 +      
ENSG00000092108 E022 0.3729606 0.0324944209 2.816206e-01 4.215411e-01 14 30633930 30633946 17 + 0.063 0.227 2.142
ENSG00000092108 E023 110.9307691 0.0002571686 1.357914e-01 2.422033e-01 14 30633947 30634037 91 + 1.978 1.919 -0.197
ENSG00000092108 E024 0.2214452 0.0411381714 9.380471e-02   14 30634038 30634794 757 + 0.000 0.227 12.748
ENSG00000092108 E025 0.1515154 0.0435574922 1.000000e+00   14 30634795 30634921 127 + 0.063 0.000 -10.611
ENSG00000092108 E026 0.4439371 0.0215788538 6.913790e-01 7.928792e-01 14 30634922 30635034 113 + 0.166 0.000 -12.287
ENSG00000092108 E027 0.4418608 0.0247960269 6.945828e-01 7.953769e-01 14 30635035 30635176 142 + 0.166 0.000 -12.270
ENSG00000092108 E028 0.2966881 0.0268834315 1.000000e+00   14 30638107 30638124 18 + 0.117 0.000 -11.689
ENSG00000092108 E029 69.4276868 0.0003661321 7.052742e-01 8.036865e-01 14 30638125 30638183 59 + 1.766 1.751 -0.052
ENSG00000092108 E030 56.1073824 0.0031690102 5.467844e-02 1.174338e-01 14 30638184 30638196 13 + 1.696 1.571 -0.428
ENSG00000092108 E031 80.4112909 0.0003872529 1.482740e-02 4.010404e-02 14 30638197 30638247 51 + 1.850 1.729 -0.408
ENSG00000092108 E032 133.3329444 0.0002977166 5.999153e-03 1.860801e-02 14 30639777 30639864 88 + 2.065 1.960 -0.352
ENSG00000092108 E033 163.0535593 0.0002304995 1.191634e-03 4.612635e-03 14 30643316 30643405 90 + 2.152 2.040 -0.376
ENSG00000092108 E034 1.3381542 0.0095800891 1.108303e-01 2.067639e-01 14 30643880 30644018 139 + 0.379 0.000 -13.836
ENSG00000092108 E035 138.2467515 0.0004587357 4.113232e-02 9.313191e-02 14 30649528 30649583 56 + 2.075 2.000 -0.251
ENSG00000092108 E036 200.9213354 0.0001866851 1.332640e-05 8.601571e-05 14 30650565 30650650 86 + 2.248 2.110 -0.461
ENSG00000092108 E037 0.0000000       14 30652338 30652372 35 +      
ENSG00000092108 E038 214.0232152 0.0001809353 3.909490e-05 2.258810e-04 14 30653489 30653588 100 + 2.272 2.147 -0.418
ENSG00000092108 E039 0.9329388 0.2627204891 1.000000e+00 1.000000e+00 14 30653589 30653981 393 + 0.250 0.227 -0.185
ENSG00000092108 E040 12.8659049 0.0325931247 2.873797e-02 6.947973e-02 14 30658083 30661939 3857 + 0.986 1.295 1.109
ENSG00000092108 E041 0.5997190 0.1381360970 5.185059e-01 6.527374e-01 14 30669763 30670255 493 + 0.210 0.000 -12.197
ENSG00000092108 E042 231.6825582 0.0002209748 4.606218e-07 4.103160e-06 14 30670256 30670395 140 + 2.310 2.158 -0.507
ENSG00000092108 E043 0.7405115 0.3455940638 4.890159e-01 6.265162e-01 14 30673235 30673256 22 + 0.249 0.000 -12.132
ENSG00000092108 E044 188.7577286 0.0002137264 5.877192e-03 1.828961e-02 14 30673257 30673347 91 + 2.210 2.123 -0.291
ENSG00000092108 E045 1.2889475 0.0102409161 6.574338e-01 7.667896e-01 14 30673348 30673923 576 + 0.286 0.374 0.556
ENSG00000092108 E046 109.9072101 0.0002667341 1.367268e-03 5.199838e-03 14 30673924 30673930 7 + 1.987 1.849 -0.462
ENSG00000092108 E047 181.0919867 0.0003677343 5.060904e-01 6.417705e-01 14 30673931 30673997 67 + 2.180 2.162 -0.060
ENSG00000092108 E048 169.8010042 0.0005761430 4.864184e-01 6.241652e-01 14 30674984 30675065 82 + 2.143 2.172 0.094
ENSG00000092108 E049 2.4389528 0.0060309221 9.952528e-01 1.000000e+00 14 30675066 30676125 1060 + 0.479 0.484 0.023
ENSG00000092108 E050 3.7300904 0.0054174284 7.881676e-01 8.643354e-01 14 30676126 30676633 508 + 0.596 0.645 0.214
ENSG00000092108 E051 0.5922303 0.0179790104 7.484332e-01 8.356766e-01 14 30676634 30676783 150 + 0.166 0.226 0.553
ENSG00000092108 E052 0.6590396 0.0238058491 7.426416e-01 8.314951e-01 14 30676784 30676855 72 + 0.166 0.226 0.557
ENSG00000092108 E053 9.4204621 0.0018485469 4.359674e-02 9.763771e-02 14 30690397 30690577 181 + 0.885 1.123 0.882
ENSG00000092108 E054 2.6207564 0.0066637346 2.310911e-01 3.637743e-01 14 30693187 30694772 1586 + 0.432 0.645 1.003
ENSG00000092108 E055 160.3418592 0.0002394697 5.657434e-02 1.207161e-01 14 30694773 30694869 97 + 2.109 2.178 0.229
ENSG00000092108 E056 0.1451727 0.0433110271 1.000000e+00   14 30694870 30695867 998 + 0.063 0.000 -10.612
ENSG00000092108 E057 84.3755772 0.0003145842 9.387275e-03 2.724919e-02 14 30700188 30700190 3 + 1.818 1.940 0.409
ENSG00000092108 E058 138.9900446 0.0002935333 2.738894e-02 6.678360e-02 14 30700191 30700258 68 + 2.044 2.128 0.281
ENSG00000092108 E059 5.0229908 0.0164730220 9.499479e-01 9.726903e-01 14 30700259 30702295 2037 + 0.715 0.707 -0.033
ENSG00000092108 E060 138.1060575 0.0007008295 8.963059e-04 3.601172e-03 14 30702296 30702375 80 + 2.029 2.155 0.423
ENSG00000092108 E061 149.8832682 0.0022048676 1.153213e-03 4.482227e-03 14 30705823 30705885 63 + 2.063 2.196 0.445
ENSG00000092108 E062 15.5904050 0.0013007207 2.746557e-01 4.138415e-01 14 30705886 30707816 1931 + 1.166 1.051 -0.414
ENSG00000092108 E063 4.9553477 0.0055963003 1.672909e-01 2.846715e-01 14 30707817 30707876 60 + 0.645 0.854 0.851
ENSG00000092108 E064 3.4565832 0.0231559877 6.462626e-01 7.582275e-01 14 30707877 30707914 38 + 0.561 0.645 0.374
ENSG00000092108 E065 3.2749951 0.0307009954 6.094129e-02 1.282220e-01 14 30707915 30707989 75 + 0.629 0.226 -2.257
ENSG00000092108 E066 197.2319261 0.0018225108 2.237866e-03 7.959841e-03 14 30707990 30708065 76 + 2.187 2.299 0.374
ENSG00000092108 E067 14.2989073 0.0381747286 5.769301e-03 1.800680e-02 14 30708066 30710174 2109 + 1.171 0.708 -1.750
ENSG00000092108 E068 8.7685705 0.0658868299 7.625226e-01 8.460962e-01 14 30714649 30715297 649 + 0.918 0.863 -0.210
ENSG00000092108 E069 6.5457803 0.0207853423 4.707543e-01 6.099699e-01 14 30715298 30715808 511 + 0.828 0.708 -0.482
ENSG00000092108 E070 3.4794739 0.0071551884 5.380832e-01 6.695495e-01 14 30715809 30715923 115 + 0.596 0.485 -0.522
ENSG00000092108 E071 181.6418671 0.0002106384 1.809527e-02 4.733629e-02 14 30715924 30715977 54 + 2.160 2.238 0.263
ENSG00000092108 E072 3.3114225 0.0684545626 1.651318e-01 2.818734e-01 14 30715978 30719324 3347 + 0.502 0.760 1.129
ENSG00000092108 E073 197.2175004 0.0002398915 3.704855e-03 1.231120e-02 14 30719325 30719377 53 + 2.192 2.284 0.307
ENSG00000092108 E074 4.7002784 0.0182241346 6.169979e-01 7.349043e-01 14 30720025 30721694 1670 + 0.674 0.761 0.356
ENSG00000092108 E075 0.5975289 0.0358131979 4.739254e-01 6.128039e-01 14 30721695 30721701 7 + 0.210 0.000 -12.612
ENSG00000092108 E076 0.5975289 0.0358131979 4.739254e-01 6.128039e-01 14 30721702 30721725 24 + 0.210 0.000 -12.612
ENSG00000092108 E077 0.8189741 0.0351547550 9.696613e-01 9.850258e-01 14 30721726 30721771 46 + 0.210 0.227 0.142
ENSG00000092108 E078 2.1724537 0.0068902738 3.744630e-01 5.188703e-01 14 30721772 30721883 112 + 0.407 0.572 0.817
ENSG00000092108 E079 173.1208271 0.0002206465 1.995061e-03 7.210881e-03 14 30721884 30721917 34 + 2.134 2.237 0.344
ENSG00000092108 E080 202.4770111 0.0005926758 1.242681e-03 4.785413e-03 14 30722494 30722559 66 + 2.202 2.307 0.350
ENSG00000092108 E081 0.5985731 0.0229695088 7.498919e-01 8.367090e-01 14 30722560 30722842 283 + 0.166 0.226 0.552
ENSG00000092108 E082 1.1028855 0.0121989077 1.546276e-05 9.838696e-05 14 30734494 30734789 296 + 0.000 0.708 15.688
ENSG00000092108 E083 187.2252401 0.0015965903 1.497269e-05 9.559621e-05 14 30734790 30734858 69 + 2.154 2.310 0.522
ENSG00000092108 E084 170.1053772 0.0005497497 9.159104e-11 1.627124e-09 14 30735586 30737694 2109 + 2.097 2.309 0.707