ENSG00000088387

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000400228 ENSG00000088387 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK9 protein_coding protein_coding 4.162156 3.113391 5.447678 0.2155391 0.179961 0.8051738 1.16825427 1.6485668 1.061997 0.0942378 0.03647787 -0.6296361 0.3070792 0.53486667 0.1953 -0.33956667 6.621401e-07 1.64841e-19 FALSE TRUE
ENST00000427887 ENSG00000088387 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK9 protein_coding protein_coding 4.162156 3.113391 5.447678 0.2155391 0.179961 0.8051738 0.05750285 0.1855221 0.000000 0.1304694 0.00000000 -4.2892598 0.0159125 0.05566667 0.0000 -0.05566667 1.430481e-01 1.64841e-19 FALSE TRUE
ENST00000682017 ENSG00000088387 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK9 protein_coding protein_coding 4.162156 3.113391 5.447678 0.2155391 0.179961 0.8051738 1.19475855 0.9354506 1.554461 0.0605278 0.08660279 0.7265920 0.2998042 0.30123333 0.2849 -0.01633333 8.606695e-01 1.64841e-19 FALSE TRUE
MSTRG.8991.7 ENSG00000088387 HEK293_OSMI2_2hA HEK293_TMG_2hB DOCK9 protein_coding   4.162156 3.113391 5.447678 0.2155391 0.179961 0.8051738 1.03413649 0.0000000 2.227247 0.0000000 0.14088604 7.8055807 0.2113708 0.00000000 0.4105 0.41050000 1.648410e-19 1.64841e-19 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000088387 E001 0.0000000       13 98793429 98793486 58 -      
ENSG00000088387 E002 0.2214452 0.0397041676 2.232696e-01   13 98793487 98793489 3 - 0.000 0.172 12.414
ENSG00000088387 E003 0.6245948 0.0449038906 1.784174e-02 4.679650e-02 13 98793490 98793491 2 - 0.000 0.392 14.052
ENSG00000088387 E004 79.4771541 0.0072912338 1.929978e-16 8.004129e-15 13 98793492 98794287 796 - 1.665 2.128 1.558
ENSG00000088387 E005 36.5146565 0.0007576238 1.059828e-06 8.747496e-06 13 98794288 98794426 139 - 1.428 1.719 0.995
ENSG00000088387 E006 67.0442216 0.0094878852 4.283762e-02 9.624517e-02 13 98794427 98794748 322 - 1.759 1.894 0.457
ENSG00000088387 E007 1.1844606 0.0106328600 6.889253e-01 7.909271e-01 13 98796206 98796213 8 - 0.364 0.294 -0.437
ENSG00000088387 E008 38.3077867 0.0068834838 6.506672e-01 7.616829e-01 13 98797115 98797253 139 - 1.584 1.560 -0.082
ENSG00000088387 E009 27.1654959 0.0019223458 4.765748e-01 6.151926e-01 13 98797389 98797489 101 - 1.406 1.464 0.201
ENSG00000088387 E010 30.8497365 0.0007618610 2.999174e-01 4.415210e-01 13 98800288 98800478 191 - 1.503 1.442 -0.209
ENSG00000088387 E011 30.4312865 0.0010717989 2.363605e-01 3.699434e-01 13 98804999 98805209 211 - 1.445 1.531 0.295
ENSG00000088387 E012 28.2602030 0.0008507202 1.739911e-01 2.933667e-01 13 98807661 98807807 147 - 1.406 1.506 0.342
ENSG00000088387 E013 0.0000000       13 98808640 98808675 36 -      
ENSG00000088387 E014 0.2987644 0.0269944033 5.076840e-01   13 98809123 98809128 6 - 0.157 0.000 -11.434
ENSG00000088387 E015 0.0000000       13 98809309 98809310 2 -      
ENSG00000088387 E016 0.1515154 0.0428900450 1.000000e+00   13 98809311 98809351 41 - 0.086 0.000 -10.434
ENSG00000088387 E017 25.9243335 0.0007777002 9.516933e-01 9.737331e-01 13 98809352 98809465 114 - 1.406 1.418 0.042
ENSG00000088387 E018 23.8095970 0.0096046942 1.429309e-01 2.520275e-01 13 98810169 98810258 90 - 1.320 1.451 0.454
ENSG00000088387 E019 15.7789894 0.0011777510 6.445506e-01 7.568245e-01 13 98810259 98810291 33 - 1.182 1.231 0.172
ENSG00000088387 E020 30.6007535 0.0007016566 7.969536e-02 1.590775e-01 13 98824398 98824504 107 - 1.435 1.555 0.412
ENSG00000088387 E021 1.4833243 0.0114169112 9.053840e-01 9.437628e-01 13 98825872 98825940 69 - 0.364 0.390 0.151
ENSG00000088387 E022 0.0000000       13 98825941 98825975 35 -      
ENSG00000088387 E023 22.7580125 0.0008190855 1.682032e-02 4.453585e-02 13 98826830 98826887 58 - 1.282 1.464 0.633
ENSG00000088387 E024 46.5257570 0.0004897774 1.621427e-02 4.319768e-02 13 98829307 98829522 216 - 1.601 1.735 0.456
ENSG00000088387 E025 30.0406743 0.0007216435 1.544239e-02 4.149667e-02 13 98829643 98829756 114 - 1.402 1.567 0.565
ENSG00000088387 E026 21.4980188 0.0026456439 1.794347e-02 4.701580e-02 13 98831348 98831395 48 - 1.251 1.442 0.666
ENSG00000088387 E027 23.2853069 0.0008818141 6.261467e-02 1.310488e-01 13 98831396 98831508 113 - 1.306 1.450 0.498
ENSG00000088387 E028 11.3491024 0.0015936313 4.103927e-01 5.539872e-01 13 98831509 98831530 22 - 1.043 1.133 0.326
ENSG00000088387 E029 17.2433907 0.0013554351 6.354800e-01 7.497792e-01 13 98831649 98831773 125 - 1.229 1.277 0.168
ENSG00000088387 E030 7.9725712 0.0021524036 8.242746e-01 8.892883e-01 13 98831774 98831786 13 - 0.937 0.918 -0.072
ENSG00000088387 E031 0.0000000       13 98831787 98831793 7 -      
ENSG00000088387 E032 10.7446421 0.0016051207 9.165614e-01 9.512581e-01 13 98837494 98837544 51 - 1.052 1.048 -0.013
ENSG00000088387 E033 14.6919375 0.0011610560 6.110173e-01 7.302350e-01 13 98837545 98837609 65 - 1.188 1.149 -0.140
ENSG00000088387 E034 1.0287911 0.0120885350 3.522718e-01 4.965387e-01 13 98845329 98845372 44 - 0.219 0.390 1.151
ENSG00000088387 E035 11.8392260 0.0014364532 6.891558e-01 7.910862e-01 13 98845924 98845947 24 - 1.100 1.067 -0.119
ENSG00000088387 E036 13.3891466 0.0013702196 5.199750e-01 6.540211e-01 13 98845948 98845991 44 - 1.156 1.102 -0.196
ENSG00000088387 E037 15.4711311 0.0016408082 4.437735e-01 5.853587e-01 13 98845992 98846060 69 - 1.212 1.149 -0.224
ENSG00000088387 E038 1.3726095 0.0099458241 1.534581e-01 2.663683e-01 13 98846520 98846556 37 - 0.439 0.172 -1.851
ENSG00000088387 E039 5.7452682 0.0074153598 1.388053e-02 3.795593e-02 13 98846557 98847684 1128 - 0.903 0.535 -1.527
ENSG00000088387 E040 17.3544220 0.0168840118 8.703569e-01 9.206085e-01 13 98848592 98848639 48 - 1.241 1.234 -0.023
ENSG00000088387 E041 14.4921455 0.0225824708 9.023107e-01 9.417666e-01 13 98850047 98850113 67 - 1.156 1.182 0.091
ENSG00000088387 E042 24.2810057 0.0008042437 6.517545e-02 1.353276e-01 13 98853408 98853522 115 - 1.421 1.288 -0.460
ENSG00000088387 E043 0.0000000       13 98854534 98854740 207 -      
ENSG00000088387 E044 27.0715381 0.0006899333 1.168549e-01 2.154783e-01 13 98855898 98856031 134 - 1.462 1.358 -0.359
ENSG00000088387 E045 1.6564984 0.0085926834 7.831080e-02 1.567664e-01 13 98856032 98860180 4149 - 0.503 0.172 -2.172
ENSG00000088387 E046 0.1472490 0.0428202265 1.000000e+00   13 98860181 98860202 22 - 0.086 0.000 -10.433
ENSG00000088387 E047 2.1722607 0.0178999099 1.263274e-04 6.427208e-04 13 98860203 98860404 202 - 0.157 0.800 3.605
ENSG00000088387 E048 22.5660629 0.0065885401 7.111005e-01 8.081028e-01 13 98860405 98860522 118 - 1.363 1.339 -0.084
ENSG00000088387 E049 24.3862125 0.0009030743 6.270424e-01 7.429007e-01 13 98863019 98863132 114 - 1.367 1.410 0.150
ENSG00000088387 E050 31.8864730 0.0006795806 4.517893e-01 5.927089e-01 13 98863370 98863548 179 - 1.475 1.531 0.193
ENSG00000088387 E051 26.5732448 0.0009125858 9.213180e-01 9.543279e-01 13 98867425 98867536 112 - 1.417 1.419 0.005
ENSG00000088387 E052 22.0255551 0.0095337901 1.748515e-01 2.944949e-01 13 98867928 98868011 84 - 1.371 1.258 -0.395
ENSG00000088387 E053 26.1323707 0.0293390199 1.897123e-01 3.133975e-01 13 98868231 98868377 147 - 1.455 1.331 -0.429
ENSG00000088387 E054 18.5182096 0.0094200518 1.349667e-01 2.410469e-01 13 98879898 98879969 72 - 1.315 1.178 -0.482
ENSG00000088387 E055 29.3552939 0.0147781476 5.570476e-01 6.855556e-01 13 98880547 98880672 126 - 1.481 1.434 -0.162
ENSG00000088387 E056 24.1105839 0.0066595027 2.718598e-01 4.106663e-01 13 98881558 98881627 70 - 1.406 1.321 -0.296
ENSG00000088387 E057 27.2716248 0.0013987357 1.245131e-01 2.264198e-01 13 98881892 98882007 116 - 1.462 1.358 -0.358
ENSG00000088387 E058 19.9091688 0.0022742818 3.181815e-02 7.550211e-02 13 98883042 98883131 90 - 1.355 1.178 -0.622
ENSG00000088387 E059 15.5432812 0.0011962918 1.156982e-01 2.138157e-01 13 98883813 98883899 87 - 1.240 1.102 -0.494
ENSG00000088387 E060 12.4819131 0.0014176945 9.006930e-03 2.629623e-02 13 98884971 98885092 122 - 1.188 0.918 -0.988
ENSG00000088387 E061 12.1015725 0.0014034671 4.244107e-01 5.673874e-01 13 98885708 98885831 124 - 1.122 1.048 -0.265
ENSG00000088387 E062 11.5524295 0.0051092557 8.716355e-01 9.214310e-01 13 98886532 98886610 79 - 1.076 1.068 -0.032
ENSG00000088387 E063 7.2429094 0.0443976725 7.982003e-01 8.711991e-01 13 98886611 98886624 14 - 0.879 0.920 0.159
ENSG00000088387 E064 0.0000000       13 98888135 98888157 23 -      
ENSG00000088387 E065 11.1385941 0.0058851582 6.383656e-01 7.520034e-01 13 98888158 98888223 66 - 1.043 1.102 0.212
ENSG00000088387 E066 21.3723541 0.0146872272 8.977333e-01 9.387112e-01 13 98888360 98888547 188 - 1.333 1.329 -0.012
ENSG00000088387 E067 15.1967962 0.0090227868 1.696777e-01 2.877843e-01 13 98888632 98888711 80 - 1.234 1.102 -0.474
ENSG00000088387 E068 18.0920926 0.0052877867 4.646154e-01 6.043336e-01 13 98897488 98897610 123 - 1.287 1.230 -0.201
ENSG00000088387 E069 16.2205803 0.0012382040 3.917143e-01 5.356432e-01 13 98898179 98898261 83 - 1.246 1.178 -0.241
ENSG00000088387 E070 18.5567409 0.0090553031 5.390870e-01 6.703945e-01 13 98901778 98901900 123 - 1.291 1.242 -0.173
ENSG00000088387 E071 24.1304880 0.0008205800 8.562993e-02 1.684020e-01 13 98902288 98902491 204 - 1.421 1.299 -0.423
ENSG00000088387 E072 19.3134588 0.0088001698 3.179904e-03 1.079708e-02 13 98902972 98903112 141 - 1.367 1.085 -0.997
ENSG00000088387 E073 14.4254035 0.0047057860 8.976085e-07 7.527633e-06 13 98904632 98904706 75 - 1.297 0.730 -2.106
ENSG00000088387 E074 14.0698301 0.0012413651 4.396954e-05 2.511502e-04 13 98914328 98914395 68 - 1.267 0.834 -1.587
ENSG00000088387 E075 18.9689697 0.0017743532 5.248483e-07 4.622975e-06 13 98915329 98915503 175 - 1.399 0.918 -1.725
ENSG00000088387 E076 15.9190353 0.0083616704 2.593165e-05 1.566591e-04 13 98920954 98921088 135 - 1.325 0.863 -1.675
ENSG00000088387 E077 11.6218063 0.0041934142 7.590557e-05 4.086528e-04 13 98922051 98922146 96 - 1.200 0.729 -1.769
ENSG00000088387 E078 11.7186246 0.0062868910 9.243610e-02 1.789194e-01 13 98923302 98923371 70 - 1.143 0.965 -0.647
ENSG00000088387 E079 10.6962354 0.0428550430 1.489596e-01 2.602740e-01 13 98925837 98925919 83 - 1.114 0.916 -0.728
ENSG00000088387 E080 13.9007805 0.0238988400 1.578180e-02 4.224274e-02 13 98930168 98930257 90 - 1.240 0.942 -1.076
ENSG00000088387 E081 12.7287793 0.0202471929 4.724337e-03 1.516172e-02 13 98955435 98955551 117 - 1.217 0.863 -1.300
ENSG00000088387 E082 0.0000000       13 98959403 98959534 132 -      
ENSG00000088387 E083 0.0000000       13 98977784 98978084 301 -      
ENSG00000088387 E084 0.0000000       13 99015447 99016052 606 -      
ENSG00000088387 E085 8.0299355 0.0213500623 1.769263e-02 4.647233e-02 13 99086223 99086641 419 - 1.026 0.690 -1.303