ENSG00000087460

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000265620 ENSG00000087460 HEK293_OSMI2_2hA HEK293_TMG_2hB GNAS protein_coding protein_coding 965.2911 1370.945 862.8392 33.13066 7.140035 -0.6680014 67.16716 90.292230 62.69702 6.8651832 1.483902 -0.526134564 0.06869583 0.06573333 0.07266667 0.006933333 5.963339e-01 3.242664e-21 FALSE TRUE
ENST00000306090 ENSG00000087460 HEK293_OSMI2_2hA HEK293_TMG_2hB GNAS protein_coding protein_coding 965.2911 1370.945 862.8392 33.13066 7.140035 -0.6680014 228.83882 337.699864 204.81291 3.9775093 4.787014 -0.721407238 0.23144583 0.24650000 0.23740000 -0.009100000 7.374169e-01 3.242664e-21 FALSE TRUE
ENST00000371085 ENSG00000087460 HEK293_OSMI2_2hA HEK293_TMG_2hB GNAS protein_coding protein_coding 965.2911 1370.945 862.8392 33.13066 7.140035 -0.6680014 29.45714 1.621638 97.86609 0.6010844 3.484507 5.906563237 0.03190833 0.00120000 0.11350000 0.112300000 3.242664e-21 3.242664e-21 FALSE TRUE
ENST00000371095 ENSG00000087460 HEK293_OSMI2_2hA HEK293_TMG_2hB GNAS protein_coding protein_coding 965.2911 1370.945 862.8392 33.13066 7.140035 -0.6680014 56.14977 61.830065 62.00749 6.3331611 3.183904 0.004133295 0.05911667 0.04493333 0.07190000 0.026966667 5.723055e-03 3.242664e-21 FALSE TRUE
ENST00000468895 ENSG00000087460 HEK293_OSMI2_2hA HEK293_TMG_2hB GNAS protein_coding protein_coding 965.2911 1370.945 862.8392 33.13066 7.140035 -0.6680014 94.25011 155.289101 30.97781 6.1450264 4.288593 -2.325276949 0.09976667 0.11326667 0.03590000 -0.077366667 3.386459e-09 3.242664e-21 FALSE TRUE
ENST00000488546 ENSG00000087460 HEK293_OSMI2_2hA HEK293_TMG_2hB GNAS protein_coding protein_coding 965.2911 1370.945 862.8392 33.13066 7.140035 -0.6680014 351.20845 563.113330 238.06219 22.5473433 11.103538 -1.242051840 0.36210000 0.41043333 0.27576667 -0.134666667 9.464092e-09 3.242664e-21 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000087460 E001 8.836053e-01 1.614227e-02 9.293009e-01 9.595439e-01 20 58839718 58839747 30 + 0.260 0.250 -0.077
ENSG00000087460 E002 1.838198e+00 8.989973e-03 2.234070e-01 3.544617e-01 20 58839748 58839782 35 + 0.260 0.487 1.339
ENSG00000087460 E003 3.196986e+00 5.249194e-03 3.651889e-01 5.095335e-01 20 58839783 58839940 158 + 0.484 0.640 0.716
ENSG00000087460 E004 2.309116e+00 2.058474e-02 8.638004e-01 9.161977e-01 20 58839941 58840106 166 + 0.484 0.522 0.183
ENSG00000087460 E005 7.723517e+00 2.250232e-03 5.186996e-01 6.529178e-01 20 58840107 58840843 737 + 0.854 0.943 0.337
ENSG00000087460 E006 1.761925e+00 8.293764e-03 5.987310e-01 7.202724e-01 20 58840844 58840886 43 + 0.348 0.449 0.560
ENSG00000087460 E007 0.000000e+00       20 58841343 58841484 142 +      
ENSG00000087460 E008 1.817044e-01 4.011345e-02 7.533864e-01   20 58841485 58841617 133 + 0.000 0.100 10.542
ENSG00000087460 E009 1.817044e-01 4.011345e-02 7.533864e-01   20 58841618 58841621 4 + 0.000 0.100 10.542
ENSG00000087460 E010 3.634088e-01 4.039920e-01 4.769026e-01   20 58841622 58841643 22 + 0.000 0.182 11.096
ENSG00000087460 E011 1.817044e-01 4.011345e-02 7.533864e-01   20 58841644 58841653 10 + 0.000 0.100 10.542
ENSG00000087460 E012 1.109330e+00 1.908111e-01 8.093412e-01 8.789282e-01 20 58841654 58841875 222 + 0.260 0.314 0.370
ENSG00000087460 E013 0.000000e+00       20 58843325 58843401 77 +      
ENSG00000087460 E014 1.586665e+00 2.846773e-02 3.108736e-01 4.533138e-01 20 58844030 58844074 45 + 0.484 0.310 -0.977
ENSG00000087460 E015 0.000000e+00       20 58852714 58852715 2 +      
ENSG00000087460 E016 0.000000e+00       20 58852716 58853260 545 +      
ENSG00000087460 E017 0.000000e+00       20 58853261 58853262 2 +      
ENSG00000087460 E018 0.000000e+00       20 58853263 58853265 3 +      
ENSG00000087460 E019 0.000000e+00       20 58853266 58855333 2068 +      
ENSG00000087460 E020 0.000000e+00       20 58855554 58855644 91 +      
ENSG00000087460 E021 0.000000e+00       20 58855645 58856146 502 +      
ENSG00000087460 E022 0.000000e+00       20 58856147 58856213 67 +      
ENSG00000087460 E023 0.000000e+00       20 58856214 58857191 978 +      
ENSG00000087460 E024 1.726337e+00 4.650838e-02 6.084232e-01 7.281597e-01 20 58888413 58888778 366 + 0.348 0.449 0.563
ENSG00000087460 E025 4.762024e-01 2.355469e-01 3.940874e-01 5.379758e-01 20 58888779 58888818 40 + 0.260 0.100 -1.659
ENSG00000087460 E026 1.817044e-01 4.011345e-02 7.533864e-01   20 58888849 58888858 10 + 0.000 0.100 10.542
ENSG00000087460 E027 1.894806e+00 4.178783e-02 4.259944e-01 5.688649e-01 20 58888859 58888892 34 + 0.539 0.405 -0.674
ENSG00000087460 E028 2.787976e+00 6.541872e-02 2.956991e-01 4.368489e-01 20 58888893 58888904 12 + 0.672 0.487 -0.837
ENSG00000087460 E029 1.042510e+00 1.187240e-02 9.911592e-03 2.854504e-02 20 58888905 58888908 4 + 0.539 0.100 -3.250
ENSG00000087460 E030 7.196392e+00 2.295045e-03 1.121285e-01 2.086579e-01 20 58888909 58889046 138 + 1.001 0.825 -0.664
ENSG00000087460 E031 2.233889e+00 9.808792e-02 4.257403e-01 5.686553e-01 20 58889100 58889123 24 + 0.587 0.447 -0.669
ENSG00000087460 E032 4.142135e+00 9.419484e-02 6.896809e-02 1.416638e-01 20 58889124 58889143 20 + 0.877 0.555 -1.335
ENSG00000087460 E033 3.854910e+00 3.648638e-02 1.547434e-01 2.680829e-01 20 58889144 58889146 3 + 0.801 0.585 -0.905
ENSG00000087460 E034 5.099851e+00 9.611487e-02 7.333939e-02 1.488677e-01 20 58889147 58889150 4 + 0.943 0.640 -1.209
ENSG00000087460 E035 5.870551e+00 1.418750e-01 6.037555e-02 1.272483e-01 20 58889151 58889159 9 + 1.017 0.665 -1.377
ENSG00000087460 E036 9.376065e+00 5.425629e-02 1.400498e-05 8.994210e-05 20 58889160 58889170 11 + 1.306 0.664 -2.412
ENSG00000087460 E037 5.755736e+01 5.566804e-02 1.264714e-17 6.130917e-16 20 58889171 58889213 43 + 2.151 1.028 -3.861
ENSG00000087460 E038 5.400917e+01 4.885021e-02 1.276883e-20 8.790030e-19 20 58889214 58889222 9 + 2.132 0.945 -4.105
ENSG00000087460 E039 6.768550e+01 4.452164e-02 2.525946e-22 2.087840e-20 20 58889223 58889226 4 + 2.226 1.059 -3.999
ENSG00000087460 E040 1.700068e+02 1.125581e-03 3.521101e-61 3.747540e-58 20 58889227 58889332 106 + 2.473 1.960 -1.717
ENSG00000087460 E041 1.350667e+02 7.077498e-03 1.361535e-12 3.263395e-11 20 58889333 58889353 21 + 2.307 1.955 -1.179
ENSG00000087460 E042 1.774427e+01 7.007087e-03 7.185309e-06 4.933978e-05 20 58889354 58889406 53 + 1.460 1.075 -1.358
ENSG00000087460 E043 3.478828e+01 4.430040e-03 7.327854e-03 2.207195e-02 20 58889407 58889525 119 + 1.627 1.459 -0.574
ENSG00000087460 E044 3.419066e+01 8.939924e-04 1.003146e-01 1.909578e-01 20 58889526 58889549 24 + 1.574 1.484 -0.306
ENSG00000087460 E045 4.044602e+01 6.854435e-03 2.038842e-06 1.583132e-05 20 58889881 58890789 909 + 1.766 1.457 -1.053
ENSG00000087460 E046 7.381611e+00 2.895863e-03 4.610691e-04 2.010638e-03 20 58891302 58891363 62 + 1.110 0.711 -1.520
ENSG00000087460 E047 1.025982e+02 5.802709e-02 1.193286e-04 6.108199e-04 20 58891364 58891420 57 + 2.230 1.783 -1.500
ENSG00000087460 E048 1.117758e+02 4.295507e-02 3.135824e-05 1.856883e-04 20 58891421 58891429 9 + 2.257 1.833 -1.422
ENSG00000087460 E049 4.709894e+02 4.161782e-02 5.579792e-10 8.670233e-09 20 58891430 58891668 239 + 2.949 2.337 -2.037
ENSG00000087460 E050 2.059376e+02 1.014927e-02 6.273667e-44 2.725980e-41 20 58891669 58891690 22 + 2.642 1.844 -2.670
ENSG00000087460 E051 4.571593e+02 6.322230e-03 1.278785e-21 9.780457e-20 20 58891691 58891715 25 + 2.856 2.457 -1.328
ENSG00000087460 E052 5.304638e+02 4.502973e-03 2.698706e-18 1.408254e-16 20 58891716 58891726 11 + 2.878 2.570 -1.023
ENSG00000087460 E053 9.325019e+02 2.303738e-03 2.501050e-14 7.756040e-13 20 58891727 58891753 27 + 3.061 2.873 -0.628
ENSG00000087460 E054 1.438703e+03 1.733065e-03 3.957329e-07 3.570699e-06 20 58891754 58891789 36 + 3.199 3.098 -0.336
ENSG00000087460 E055 2.884501e+03 8.128488e-04 2.168864e-05 1.333436e-04 20 58891790 58891865 76 + 3.470 3.419 -0.171
ENSG00000087460 E056 6.717251e-01 2.757280e-02 1.408048e-01 2.491249e-01 20 58891981 58892036 56 + 0.348 0.100 -2.247
ENSG00000087460 E057 4.089700e+00 4.449073e-02 1.495282e-04 7.449356e-04 20 58892037 58892077 41 + 0.983 0.361 -2.731
ENSG00000087460 E058 3.175227e+01 3.123332e-02 3.141317e-04 1.437263e-03 20 58892078 58892209 132 + 1.697 1.330 -1.259
ENSG00000087460 E059 5.747616e+00 3.422128e-03 3.596684e-03 1.200164e-02 20 58892333 58892506 174 + 1.018 0.664 -1.381
ENSG00000087460 E060 5.111392e+00 3.857348e-02 2.511026e-02 6.210143e-02 20 58893095 58893099 5 + 0.963 0.637 -1.297
ENSG00000087460 E061 1.954572e+02 1.474610e-03 1.295044e-68 1.858653e-65 20 58893100 58894950 1851 + 2.545 1.999 -1.826
ENSG00000087460 E062 2.374781e+01 7.837769e-04 1.017283e-11 2.115491e-10 20 58894951 58894974 24 + 1.614 1.144 -1.634
ENSG00000087460 E063 5.035570e+01 7.298695e-03 2.042413e-10 3.416591e-09 20 58894975 58895164 190 + 1.906 1.508 -1.348
ENSG00000087460 E064 1.665576e+01 3.222445e-02 6.155271e-03 1.901970e-02 20 58895165 58895196 32 + 1.409 1.096 -1.101
ENSG00000087460 E065 9.211819e+01 4.199684e-04 5.289501e-26 6.326264e-24 20 58895197 58895611 415 + 2.159 1.778 -1.283
ENSG00000087460 E066 4.476063e+03 1.403117e-04 6.004597e-11 1.098024e-09 20 58895612 58895684 73 + 3.651 3.614 -0.125
ENSG00000087460 E067 4.052041e+01 5.643189e-03 1.458799e-20 9.969880e-19 20 58897440 58898940 1501 + 1.888 1.278 -2.086
ENSG00000087460 E068 2.179893e+03 3.042782e-04 1.366305e-16 5.780311e-15 20 58898941 58898985 45 + 3.367 3.285 -0.271
ENSG00000087460 E069 1.043601e+01 2.559508e-03 6.187890e-11 1.128926e-09 20 58898986 58899162 177 + 1.356 0.688 -2.486
ENSG00000087460 E070 2.246077e+01 8.210805e-04 2.278184e-02 5.729240e-02 20 58899949 58900030 82 + 1.441 1.287 -0.536
ENSG00000087460 E071 4.322362e+01 7.607952e-04 4.720100e-06 3.379602e-05 20 58900031 58900410 380 + 1.766 1.532 -0.794
ENSG00000087460 E072 9.231703e-01 2.766209e-01 1.022334e-01 1.939147e-01 20 58902759 58902767 9 + 0.000 0.394 12.659
ENSG00000087460 E073 9.231703e-01 2.766209e-01 1.022334e-01 1.939147e-01 20 58902768 58902769 2 + 0.000 0.394 12.659
ENSG00000087460 E074 3.991813e+00 5.258213e-02 8.009278e-01 8.731198e-01 20 58902770 58902831 62 + 0.707 0.683 -0.100
ENSG00000087460 E075 3.698449e+00 6.150496e-03 3.465476e-01 4.906683e-01 20 58902832 58902839 8 + 0.741 0.613 -0.540
ENSG00000087460 E076 8.575113e+00 8.033169e-03 2.596660e-01 3.971111e-01 20 58902840 58902980 141 + 1.035 0.916 -0.442
ENSG00000087460 E077 3.530308e+01 5.993216e-04 3.169333e-06 2.358383e-05 20 58902981 58903527 547 + 1.693 1.433 -0.889
ENSG00000087460 E078 1.348736e+03 3.684128e-04 1.105978e-01 2.064135e-01 20 58903528 58903530 3 + 3.111 3.102 -0.028
ENSG00000087460 E079 3.595899e+03 4.205515e-05 9.747003e-12 2.034755e-10 20 58903531 58903536 6 + 3.553 3.520 -0.110
ENSG00000087460 E080 5.378494e+03 2.635602e-05 3.628821e-06 2.667194e-05 20 58903537 58903585 49 + 3.715 3.702 -0.041
ENSG00000087460 E081 8.790456e+00 2.061228e-03 2.884590e-01 4.290570e-01 20 58903586 58903671 86 + 1.035 0.929 -0.391
ENSG00000087460 E082 6.596974e+03 2.160900e-05 9.339146e-03 2.713110e-02 20 58903672 58903740 69 + 3.795 3.795 0.000
ENSG00000087460 E083 6.511439e+03 3.210564e-05 1.264785e-12 3.052742e-11 20 58903741 58903791 51 + 3.805 3.782 -0.078
ENSG00000087460 E084 2.659600e+01 7.397192e-04 1.991297e-02 5.130495e-02 20 58903792 58905382 1591 + 1.507 1.361 -0.502
ENSG00000087460 E085 8.746873e+03 3.092592e-05 6.455880e-06 4.481175e-05 20 58905383 58905480 98 + 3.923 3.915 -0.025
ENSG00000087460 E086 7.011485e+01 3.423552e-04 9.093594e-36 2.324904e-33 20 58905481 58907980 2500 + 2.096 1.576 -1.753
ENSG00000087460 E087 7.268593e+00 2.324907e-03 7.472981e-05 4.029262e-04 20 58907981 58908043 63 + 1.137 0.688 -1.711
ENSG00000087460 E088 3.301645e+01 6.868205e-04 3.161830e-07 2.911730e-06 20 58908044 58908915 872 + 1.679 1.380 -1.021
ENSG00000087460 E089 1.627701e+01 1.430318e-03 2.151288e-02 5.467015e-02 20 58908916 58909161 246 + 1.332 1.152 -0.636
ENSG00000087460 E090 5.702610e+03 6.821626e-05 7.687288e-03 2.299486e-02 20 58909162 58909174 13 + 3.734 3.731 -0.011
ENSG00000087460 E091 6.929157e+03 2.369572e-04 2.475061e-03 8.688995e-03 20 58909175 58909216 42 + 3.825 3.813 -0.038
ENSG00000087460 E092 2.717910e+01 3.287631e-02 6.090615e-01 7.286193e-01 20 58909217 58909349 133 + 1.461 1.417 -0.152
ENSG00000087460 E093 7.418105e+03 3.091783e-04 7.448499e-01 8.330344e-01 20 58909350 58909423 74 + 3.836 3.853 0.057
ENSG00000087460 E094 6.388114e+00 2.706438e-03 2.493557e-01 3.851648e-01 20 58909424 58909520 97 + 0.923 0.791 -0.511
ENSG00000087460 E095 7.081571e+03 5.141537e-05 6.126576e-04 2.579459e-03 20 58909521 58909579 59 + 3.805 3.837 0.106
ENSG00000087460 E096 2.183041e+01 8.356005e-04 1.826167e-01 3.044876e-01 20 58909580 58909683 104 + 1.386 1.298 -0.306
ENSG00000087460 E097 9.860912e+03 8.842828e-05 3.812068e-14 1.150525e-12 20 58909684 58909804 121 + 3.932 3.989 0.188
ENSG00000087460 E098 2.408015e+01 3.493051e-02 7.961170e-01 8.698311e-01 20 58909805 58909950 146 + 1.357 1.389 0.112
ENSG00000087460 E099 1.061496e+04 6.717139e-05 7.045805e-32 1.341514e-29 20 58909951 58910081 131 + 3.952 4.026 0.246
ENSG00000087460 E100 3.090952e+01 7.302782e-04 8.557928e-01 9.108178e-01 20 58910082 58910333 252 + 1.460 1.484 0.082
ENSG00000087460 E101 9.363618e+03 2.615629e-04 4.655521e-13 1.204719e-11 20 58910334 58910401 68 + 3.897 3.973 0.251
ENSG00000087460 E102 2.660093e+01 1.296449e-02 1.358747e-02 3.727670e-02 20 58910402 58910682 281 + 1.251 1.489 0.828
ENSG00000087460 E103 5.050211e+03 3.172057e-04 8.168180e-08 8.439339e-07 20 58910683 58910684 2 + 3.634 3.703 0.226
ENSG00000087460 E104 1.681568e+04 1.311213e-03 1.027317e-12 2.518076e-11 20 58910685 58911192 508 + 4.114 4.243 0.431